Clone RE33290 Report

Gene	Date	Evidence
pnr	2008-04-29	Release 5.5 accounting
pnr	2008-04-29	Picked prior to 5.5
pnr	2008-08-15	Release 5.9 accounting
pnr	2008-12-18	5.12 accounting

Clone Sequence Records

RE33290.complete Sequence

3625 bp assembled on 2007-10-25

GenBank Submission: BT031157

> RE33290.complete
AGTGTGTTTGTTCGCCTCAAGGAAGTCGGATCGTTGTGCTCCCGCTCTCC
AAAATATAATTAAACAGGAGACAACGAAAATTAAGAAAACAGAGACAAAA
GCACCGGAATCGGTTAAGTGCTCGTAAATGGATTAAAACGAAATTTATCG
CTTTATAGACCACATTAATCAAATGTCTTACAACAAGGCCCATAAAATGA
ATGCCATATAAATAATAAACAAACGTCGTGTAAAAGTGCAATAAAACATT
TCGGAGCTTGTTGCAATTAATCTGAATGCATTTGTGATACGATTATTTAT
TTACGCTTCCCAACGCGACCGTCCATATCAATAACATAACTAGCTGTACA
GCAGAATCGTATCAAATCGAATATATCCAAATCGGAAGCTCAATCCGAAT
CGGTTTCAACCTCAACTTGAACCGAGCTGCTTGCGTGGCCCATTAATCAT
TCCAAAAACGAGCTGCGATCGCGAATTTTTTGGCCATAAATCATGGGCAT
CTTACTGAGTGATGGCGATTCCACATCGGATCAGCAGTCGACTCGCGACT
ATCCCCACTTCAGCGGCGACTATCAGAACGTGACGCTGTCGGCTGCCTCT
GCATCCACATCCGCATCCGCTTCTGCCACCCACGTCGCCGCCGTCAAGAT
GTACCACAGTAGCGCCGTTGCGGCATACACGGACCTGGCTGCCGCCGGTA
GTGCCGCAAGCGCCGGAGTCGGAGTCGGGGTGTCCGGCTATCACCAGCAG
GCGGTAAACGCTCCCGTTTACGTGCCATCCAACCGACAGTACAACCACGT
GGCCGCTCATTTTGGAAGCGCTGCGGCGCAGAATGCCTGGACCACGGAAG
GATTCGGATCGGCGCATGCACAGTTCTACTCGCCAAACGCCGCTGTGATG
ATGGGCTCGTGGCGCAGTGCCTACGATCCGTCGGGCTTCCAAAGATCCTC
GCCCTACGAGAGCGCTATGGACTTCCAGTTTGGCGAGGGACGCGAGTGCG
TCAATTGCGGTGCCATATCGACTCCGTTGTGGCGACGGGATGGAACCGGA
CACTATCTGTGCAACGCCTGCGGACTGTACCATAAGATGAACGGAATGAA
CCGGCCGCTGATCAAGCCTAGCAAGCGCCTGGTGAGTGCAACTGCCACTC
GGAGGATGGGCTTGTGCTGCACCAACTGCGGCACTCGGACCACCACACTT
TGGAGGCGCAACAACGATGGCGAACCCGTGTGCAATGCCTGCGGACTGTA
CTACAAGTTGCACGGTGTTAACAGACCACTGGCCATGAGGAAGGATGGCA
TTCAGACCAGGAAACGAAAGCCCAAGAAAACGGGAAGTGGTTCGGCGGTG
GGAGCGGGCACTGGATCCGGAACAGGCTCCACTTTGGAGGCCATCAAGGA
GTGCAAGGAGGAGCATGATCTCAAACCCTCGCTCAGCCTGGAGCGCCATA
GCCTCAGTAAGCTGCACACGGATATGAAGAGCGGCACCAGCAGTAGTAGC
ACCTTGATGGGACATCACAGCGCGCAGCAGCAGCAGCAGCAGCAACAGCA
ACAACAACAGCAACAGCAGCAGCAGCAGCAGCAATCGGCACACCAACAAT
GCTTTCCCCTTTACGGACAGACGACGACGCAACAGCAGCACCAGCAACAT
GGCCACAGCATGACATCATCCTCTGGACAGGCACATCTGAGTGCCCGCCA
CCTTCACGGAGCGGCAGGAACGCAGCTCTACACGCCCGGCAGCAGTTCCG
GCGGAGGCAGTGCGTCTGCCTACACATCGCACAGTGCGGAGACGCCGGCC
CTGAGCAACGGAACTCCCTCGCCCCATTACCAGCACCACCACCACCTCGG
CGGAACCCATGGACACCATGTGACGGCAGCGGCGGCACATCATCATTTCC
ATGCCGCTGCCGCTGTGGCCGCCTACGGCGTAAAGACAGAGGCGAGTGCC
ACCAACTACGACTATGTGAACAACTGCTACTTTGGGGGCACCTTCGGTGC
GCTGGGAGGAGCTGCAACCACAACCGCCATGGCTGGCGGAGCGGCCAGTG
AACTGGCTGGCTACCATCACCAGCACAACGTCATCCAGGCAGCCAAACTG
ATGGCCACCTCGTAAAGTTAAAAATCTGGACACTGGCTCTGTGATGTGAT
CTCCTTCCTCCTCCTAAACTGCACCCTCACTTGAAGCCTTCCTTGGAATC
ATGGCATTGAAAAGACTTTAGACATTAGTACTACTCGGCCTTGTTTGCAA
TTTCGTTTAATTAAGTTTAGCTAATTGTGTGACTTTCTGAAACGTATTTT
CGGAATAGCTTAGTTCTAGCTAACTATCATGAATTAGCTATGTTTAATTG
AATTTTGGGTCGCAAATGGGGTTTTTTAGTTTAAGGGCTGCCTGAATGGC
ACTTAGTTTTTATTTCTTGTAAATAACTAATAGCAATTCTTGTTGTACAA
ATCTGCGTCTATATGTATGTGCTTATCCATCAAGTTATATGTGTATGTAC
AGATATTGATTATCGCTTCGTTTATAATGTAGTTCCATTTAGGTCTTTAT
CATAAACATTATCTTGTTCAAGTAGCTTAAATATTTTATGAGTATTCCGC
ACTTCCCCACCAACCCACTTAATAGAACATTTAGCAGTTAGTCCTATGTA
GAAGTCTAGAATTAATATCGTAGCTCTGATCCATTTAATATGAACGCTAA
ATAAAGATTGTATTAAACTATGCATTGAGTTTAGTATTACTTATTTTTGG
ATCTGATATATAAAACGTTTTAGTCTGTATATCAAAACTTAATACAACTG
AATAGCAAAACTTGTTATAAATTCTAATTCTTCTCAAAATTGTATACTCC
GTCCTTTTCTACTGACGGAGTAGTTTTACCATATCTGTGAGCTTTTAGTC
GTGCTTAATGTGGATAAAAATCGTTGCCTACTTTCAAGCGCAGTTTAAAT
CACCAAATGTACCCAACATACAAGTCAACATTACTTTACTTTACATATTA
CTTAACAGCACTGTAGCCTTTTTACAACGTATTAACTTTTTTTTATATTT
ATTTATTTAGAAGCTATAAATCCATACAATGCATTGTAACATAACAGAGC
AATTAACAGATAAATGATAAAACCAAACCTCTTACTAACAACGTATTAAC
TATTTGTATGCCGCCAGCGTAAATATTTAAATCTCCAAATGAACTGCAAA
TCAGTAAAATAGTGTTTTTTTACCATTGCCAATTTGCTTAGACATTTTCA
CAATAACCACTAACGGGCTAGTTGGTCAATGTCAGATTGTCAAAATGTAC
CATCAGTCTGGTGATAAACAATCAAATTACACAGGCGTGATCTGCCTGCC
AAGGTGCCAATTTAACAAACCCAATCGAAGCTATTGACCTCTTGGCGCCA
ATTGCACGTGATCAGGTGCGGATTAGCCAAAAGCCATGGGAAAGCCCATG
CAATTATTTGTTTTCTTTGCTTTTATGACATTGCTAAAAAAAATATATCG
CAAAAAGTGATGGAGACGGGTGATTGCATCACTTGCTCTGGCAAGCTGGC
TGTATTGAAAAAAACCAGGAATGCACCGACAAGTGTGAAAATAAACGCCA
ATAAAACACAAAAAAAAAAAAAAAA

RE33290.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:36:19

Subject	Length	Description	Subject Range	Query Range	Score	Percent	Strand
pnr-RA	3878	pnr-RA	280..3878	1..3599	17965	99.9	Plus
pnr.a	3235	pnr.a	777..3235	1141..3599	12280	99.9	Plus
pnr.d	3270	pnr.d	1360..3270	1141..3051	9540	99.9	Plus
pnr.a	3235	pnr.a	163..776	518..1131	3070	100	Plus
pnr.d	3270	pnr.d	746..1359	518..1131	3070	100	Plus

Blast to d_melanogaster_OreR.fa performed 2019-03-16 22:09:32

Subject	Length	Description	Subject Range	Query Range	Score	Percent	Strand
chr3R	27901430	chr3R	11864198..11866393	1417..3608	10795	99.5	Plus
chr3R	27901430	chr3R	11863171..11863791	520..1140	3060	99.5	Plus
chr3R	27901430	chr3R	11859189..11859707	1..519	2550	99.4	Plus
chr3R	27901430	chr3R	11863854..11864130	1141..1417	1385	100	Plus
chr3R	27901430	chr3R	3986979..3987112	1118..985	370	85.1	Minus
chr2R	21145070	chr2R	2686849..2686954	3138..3037	330	89.6	Minus
chr3RHet	2517486	chr3RHet	2330378..2330482	3038..3138	325	89.5	Plus
chr2L	23010047	chr2L	21407316..21407420	3038..3138	325	89.5	Plus
chr2R	21145070	chr2R	1988923..1989028	3138..3037	315	88.7	Minus
chr2R	21145070	chr2R	18351953..18352058	3138..3037	315	88.7	Minus
chr2L	23010047	chr2L	12762623..12762728	3138..3037	315	88.7	Minus
chr3L	24539361	chr3L	18509583..18509688	3138..3037	315	88.7	Minus
chr3L	24539361	chr3L	24296381..24296486	3138..3037	315	88.7	Minus
chr3R	27901430	chr3R	484816..484920	3138..3038	310	88.6	Minus
chr3R	27901430	chr3R	7666639..7666744	3037..3138	300	87.7	Plus
chr2R	21145070	chr2R	5833000..5833105	3138..3037	300	87.7	Minus
chr2R	21145070	chr2R	7095342..7095447	3037..3138	300	87.7	Plus
chr3RHet	2517486	chr3RHet	1484353..1484458	3037..3138	300	87.7	Plus
chr2L	23010047	chr2L	7578340..7578445	3037..3138	300	87.7	Plus
chr2L	23010047	chr2L	13242894..13242999	3138..3037	300	87.7	Minus
chr3L	24539361	chr3L	16518096..16518201	3138..3037	300	87.7	Minus
chrX	22417052	chrX	18083317..18083422	3037..3138	300	87.7	Plus
chrU	10048995	chrU	1930169..1930274	3138..3037	300	87.7	Minus
chrU	10048995	chrU	6455786..6455891	3138..3037	300	87.7	Minus
chrU	10048995	chrU	6457988..6458093	3138..3037	300	87.7	Minus
chr2LHet	368865	chr2LHet	357783..357888	3138..3037	300	87.7	Minus
chr3R	27901430	chr3R	1946880..1946984	3137..3037	295	87.6	Minus
chr3L	24539361	chr3L	19105263..19105367	3037..3137	295	87.6	Plus
chr3R	27901430	chr3R	16331193..16331296	3136..3037	290	87.5	Minus
chr2RHet	3288813	chr2RHet	314203..314306	3138..3039	290	87.5	Minus
chr3R	27901430	chr3R	2032013..2032118	3138..3037	285	86.8	Minus
chr3R	27901430	chr3R	13119387..13119492	3138..3037	285	86.8	Minus
chr2L	23010047	chr2L	21336438..21336540	3040..3138	285	87.4	Plus
chr3L	24539361	chr3L	6987215..6987320	3037..3138	285	86.8	Plus
chr3L	24539361	chr3L	7122284..7122389	3037..3138	285	86.8	Plus
chrX	22417052	chrX	8256849..8256947	3138..3044	280	87.9	Minus
chr3R	27901430	chr3R	10884000..10884096	3138..3046	270	87.6	Minus
chrU	10048995	chrU	2183149..2183254	3037..3138	270	85.8	Plus
chr3R	27901430	chr3R	11842655..11842776	1207..1328	265	81.1	Plus
chr2R	21145070	chr2R	2194306..2194406	3042..3138	260	86.1	Plus
chr3R	27901430	chr3R	3869941..3870046	3037..3138	255	84.9	Plus
chr3R	27901430	chr3R	20316635..20316740	3138..3037	255	84.9	Minus
chr3L	24539361	chr3L	5918991..5919096	3037..3138	255	84.9	Plus
chr3LHet	2555433	chr3LHet	2502752..2502857	3138..3037	255	84.9	Minus
chrX	22417052	chrX	17033304..17033388	3118..3038	240	88.2	Minus
chr2L	23010047	chr2L	19271151..19271253	3138..3037	220	84.9	Minus
chr3R	27901430	chr3R	8605627..8605673	3083..3037	205	95.7	Minus
chr3L	24539361	chr3L	15046416..15046462	3132..3086	190	93.6	Minus

Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:50:15 has no hits.

Blast to na_all.dmel.RELEASE6 performed 2019-03-16 22:09:29

Subject	Length	Description	Subject Range	Query Range	Score	Percent	Strand
3R	32079331	3R	16039614..16041819	1417..3622	10970	99.8	Plus
3R	32079331	3R	16038587..16039207	520..1140	3105	100	Plus
3R	32079331	3R	16034588..16035106	1..519	2580	99.8	Plus
3R	32079331	3R	16039270..16039546	1141..1417	1385	100	Plus
3R	32079331	3R	8160976..8161109	1118..985	370	85.1	Minus
3R	32079331	3R	4033879..4033984	3037..3138	330	89.6	Plus
2R	25286936	2R	6799609..6799714	3138..3037	330	89.6	Minus
2L	23513712	2L	21408815..21408919	3038..3138	325	89.5	Plus
3R	32079331	3R	4659106..4659212	3138..3036	320	88.8	Minus
2R	25286936	2R	6101793..6101898	3138..3037	315	88.7	Minus
2R	25286936	2R	22465397..22465502	3138..3037	315	88.7	Minus
3L	28110227	3L	18519982..18520087	3138..3037	315	88.7	Minus
3L	28110227	3L	24307482..24307587	3138..3037	315	88.7	Minus
3R	32079331	3R	2919016..2919121	3037..3138	300	87.7	Plus
3R	32079331	3R	11841128..11841233	3037..3138	300	87.7	Plus
2R	25286936	2R	9945514..9945619	3138..3037	300	87.7	Minus
2R	25286936	2R	11207882..11207987	3037..3138	300	87.7	Plus
2L	23513712	2L	7579260..7579365	3037..3138	300	87.7	Plus
2L	23513712	2L	12763922..12764027	3138..3037	300	87.7	Minus
2L	23513712	2L	13244233..13244338	3138..3037	300	87.7	Minus
2L	23513712	2L	23502630..23502735	3138..3037	300	87.7	Minus
3L	28110227	3L	16528345..16528450	3138..3037	300	87.7	Minus
U	3151297	U	163177..163282	3138..3037	300	87.7	Minus
U	3151297	U	2974106..2974211	3138..3037	300	87.7	Minus
U	3151297	U	2976308..2976413	3138..3037	300	87.7	Minus
X	23542271	X	18194131..18194236	3037..3138	300	87.7	Plus
X	23542271	X	22084187..22084292	3138..3037	300	87.7	Minus
3R	32079331	3R	6121240..6121344	3137..3037	295	87.6	Minus
3L	28110227	3L	19115708..19115812	3037..3137	295	87.6	Plus
3R	32079331	3R	20507280..20507383	3136..3037	290	87.5	Minus
2R	25286936	2R	1187537..1187640	3138..3039	290	87.5	Minus
3R	32079331	3R	17294974..17295079	3138..3037	285	86.8	Minus
3R	32079331	3R	6206361..6206466	3138..3037	285	86.8	Minus
2L	23513712	2L	21337915..21338017	3040..3138	285	87.4	Plus
3L	28110227	3L	6994942..6995047	3037..3138	285	86.8	Plus
3L	28110227	3L	7130016..7130121	3037..3138	285	86.8	Plus
X	23542271	X	8365117..8365215	3138..3044	280	87.9	Minus
3R	32079331	3R	15059352..15059448	3138..3046	270	87.6	Minus
3L	28110227	3L	16731000..16731096	3046..3138	270	87.6	Plus
XYmm	216041	XYmm	34113..34218	3037..3138	270	85.8	Plus
3R	32079331	3R	16018047..16018168	1207..1328	265	81.1	Plus
2R	25286936	2R	6307139..6307239	3042..3138	260	86.1	Plus
3R	32079331	3R	8043871..8043976	3037..3138	255	84.9	Plus
3R	32079331	3R	24493351..24493456	3138..3037	255	84.9	Minus
3L	28110227	3L	5926393..5926498	3037..3138	255	84.9	Plus
3L	28110227	3L	27379827..27379932	3138..3037	255	84.9	Minus
X	23542271	X	17143826..17143910	3118..3038	240	88.2	Minus
2L	23513712	2L	19272534..19272636	3138..3037	220	84.9	Minus
3R	32079331	3R	12780340..12780386	3083..3037	205	95.7	Minus

Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:33:07

Subject	Length	Description	Subject Range	Query Range	Score	Percent	Strand
3R	31820162	3R	15780445..15782650	1417..3622	10970	99.8	Plus
3R	31820162	3R	15779418..15780038	520..1140	3105	100	Plus
3R	31820162	3R	15775419..15775937	1..519	2580	99.8	Plus
3R	31820162	3R	15780101..15780377	1141..1417	1385	100	Plus
3R	31820162	3R	7901807..7901940	1118..985	370	85	Minus
3R	31820162	3R	3695317..3695422	3037..3138	340	89.6	Plus
2R	25260384	2R	6800808..6800913	3138..3037	340	89.6	Minus
2L	23513712	2L	21408815..21408919	3038..3138	335	89.5	Plus
3L	28103327	3L	24300582..24300687	3138..3037	325	88.6	Minus
3L	28103327	3L	18513082..18513187	3138..3037	325	88.6	Minus
2R	25260384	2R	22466596..22466701	3138..3037	325	88.6	Minus
2R	25260384	2R	6102992..6103097	3138..3037	325	88.6	Minus
3R	31820162	3R	11581959..11582064	3037..3138	310	87.7	Plus
3L	28103327	3L	16521445..16521550	3138..3037	310	87.7	Minus
2L	23513712	2L	7579260..7579365	3037..3138	310	87.7	Plus
2L	23513712	2L	13244233..13244338	3138..3037	310	87.7	Minus
2L	23513712	2L	12763922..12764027	3138..3037	310	87.7	Minus
2R	25260384	2R	9946713..9946818	3138..3037	310	87.7	Minus
X	23527363	X	18202229..18202334	3037..3138	310	87.7	Plus
3L	28103327	3L	19108808..19108912	3037..3137	305	87.6	Plus
3R	31820162	3R	20248111..20248214	3136..3037	300	87.5	Minus
3R	31820162	3R	17035805..17035910	3138..3037	295	86.7	Minus
3L	28103327	3L	7123116..7123221	3037..3138	295	86.7	Plus
2L	23513712	2L	21337915..21338017	3040..3138	295	87.3	Plus
X	23527363	X	8373215..8373313	3138..3044	290	87.8	Minus
3L	28103327	3L	16724100..16724196	3046..3138	280	87.6	Plus
Unmapped_scaffold_07	50625	Unmapped_scaffold_07	34113..34218	3037..3138	280	85.8	Plus
2R	25260384	2R	6308338..6308438	3042..3138	270	86.1	Plus
X	23527363	X	22808374..22808477	3138..3039	270	85.5	Minus
3R	31820162	3R	7784702..7784807	3037..3138	265	84.9	Plus
3R	31820162	3R	15758878..15758999	1207..1328	265	81.1	Plus
3L	28103327	3L	5919493..5919598	3037..3138	265	84.9	Plus
3L	28103327	3L	20704936..20705034	3037..3131	260	85.8	Plus
X	23527363	X	17151924..17152008	3118..3038	250	88.2	Minus
2L	23513712	2L	19272534..19272636	3138..3037	240	84.9	Minus
3R	31820162	3R	3813676..3813771	3047..3138	230	84.3	Plus
2L	23513712	2L	23502630..23502682	3138..3086	220	94.3	Minus
Unmapped_scaffold_08	88768	Unmapped_scaffold_08	76810..76862	3138..3086	220	94.3	Minus
3R	31820162	3R	4399937..4399987	3138..3088	210	94.1	Minus
2R	25260384	2R	4009597..4009691	3138..3048	210	83.1	Minus
3R	31820162	3R	12521171..12521217	3083..3037	205	95.7	Minus
3R	31820162	3R	24234182..24234234	3138..3086	205	92.4	Minus
3R	31820162	3R	14800183..14800235	3138..3086	205	92.4	Minus
3R	31820162	3R	5947192..5947244	3138..3086	205	92.4	Minus
3L	28103327	3L	6988095..6988147	3086..3138	205	92.4	Plus
3L	28103327	3L	27372927..27372979	3138..3086	205	92.4	Minus
2R	25260384	2R	11209134..11209186	3086..3138	205	92.4	Plus
2R	25260384	2R	1187537..1187589	3138..3086	205	92.4	Minus
X	23527363	X	22069279..22069331	3138..3086	205	92.4	Minus
Unimproved_211000022270621_66_592	526	Unimproved_211000022270621_66_592	390..442	3086..3138	205	92.4	Plus
3R	31820162	3R	5862071..5862122	3137..3086	200	92.3	Minus
2L	23513712	2L	22052943..22053038	3138..3047	200	82.2	Minus
3R	31820162	3R	4399996..4400043	3083..3036	195	93.7	Minus

Blast to na_te.dros performed 2019-03-16 22:09:30

Subject	Length	Description	Subject Range	Query Range	Score	Percent	Strand
BS	5142	BS BS 5142bp	5004..5115	3144..3037	371	83	Minus
Dvir\TART	8500	Dvir\TART TARTVIR 8500bp	6716..6903	1472..1666	334	68.4	Plus
Dvir\TART	8500	Dvir\TART TARTVIR 8500bp	2312..2534	1524..1745	300	64	Plus
Dvir\TART	8500	Dvir\TART TARTVIR 8500bp	6724..6868	1524..1664	273	69.2	Plus
Dvir\TART	8500	Dvir\TART TARTVIR 8500bp	6720..6825	1550..1660	173	65.8	Plus
roo	9092	roo DM_ROO 9092bp	1049..1165	1532..1647	159	60.7	Plus
Dvir\TART	8500	Dvir\TART TARTVIR 8500bp	2306..2469	1560..1721	148	58.7	Plus
BS	5142	BS BS 5142bp	2012..2125	1543..1667	140	62.4	Plus
accord2	7650	accord2 QBERT 7650bp	6968..7042	2986..3058	117	65.3	Plus

RE33290.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 22:10:39 Download gff for RE33290.complete

Subject	Subject Range	Query Range	Percent	Splice	Strand
chr3R	11859189..11859707	1..519	99	->	Plus
chr3R	11863171..11863791	520..1140	99	->	Plus
chr3R	11863854..11864130	1141..1417	100	->	Plus
chr3R	11864199..11864304	1418..1523	100	==	Plus
chr3R	11864365..11865821	1584..3036	99	==	Plus
chr3R	11865924..11866393	3139..3609	99		Plus

Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:10:16 Download gff for RE33290.complete

Subject	Subject Range	Query Range	Percent	Splice	Strand
pnr-RA	1..1623	493..2115	100		Plus

Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:06:26 Download gff for RE33290.complete

Subject	Subject Range	Query Range	Percent	Splice	Strand
pnr-RA	1..1623	493..2115	100		Plus

Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:09:35 Download gff for RE33290.complete

Subject	Subject Range	Query Range	Percent	Splice	Strand
pnr-RA	1..1623	493..2115	100		Plus

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:52:43 Download gff for RE33290.complete

Subject	Subject Range	Query Range	Percent	Splice	Strand
pnr-RA	1..1623	493..2115	100		Plus

Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:35:20 Download gff for RE33290.complete

Subject	Subject Range	Query Range	Percent	Splice	Strand
pnr-RA	1..1623	493..2115	100		Plus

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 17:01:40 Download gff for RE33290.complete

Subject	Subject Range	Query Range	Percent	Splice	Strand
pnr-RA	199..2918	1..2720	99		Plus

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:06:26 Download gff for RE33290.complete

Subject	Subject Range	Query Range	Percent	Splice	Strand
pnr-RA	199..2918	1..2720	99		Plus

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:09:35 Download gff for RE33290.complete

Subject	Subject Range	Query Range	Percent	Splice	Strand
pnr-RC	3..3600	1..3607	99		Plus

Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:52:43 Download gff for RE33290.complete

Subject	Subject Range	Query Range	Percent	Splice	Strand
pnr-RA	199..2918	1..2720	99		Plus

Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:35:20 Download gff for RE33290.complete

Subject	Subject Range	Query Range	Percent	Splice	Strand
pnr-RC	3..3592	1..3599	99		Plus

Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:10:39 Download gff for RE33290.complete

Subject	Subject Range	Query Range	Percent	Splice	Strand
3R	16034588..16035106	1..519	99	->	Plus
3R	16038587..16039207	520..1140	100	->	Plus
3R	16039270..16039546	1141..1417	100	->	Plus
3R	16039615..16041805	1418..3609	99		Plus

Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:10:39 Download gff for RE33290.complete

Subject	Subject Range	Query Range	Percent	Splice	Strand
3R	16034588..16035106	1..519	99	->	Plus
3R	16038587..16039207	520..1140	100	->	Plus
3R	16039270..16039546	1141..1417	100	->	Plus
3R	16039615..16041805	1418..3609	99		Plus

Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:10:39 Download gff for RE33290.complete

Subject	Subject Range	Query Range	Percent	Splice	Strand
3R	16034588..16035106	1..519	99	->	Plus
3R	16038587..16039207	520..1140	100	->	Plus
3R	16039270..16039546	1141..1417	100	->	Plus
3R	16039615..16041805	1418..3609	99		Plus

Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:09:35 Download gff for RE33290.complete

Subject	Subject Range	Query Range	Percent	Splice	Strand
arm_3R	11860310..11860828	1..519	99	->	Plus
arm_3R	11864309..11864929	520..1140	100	->	Plus
arm_3R	11864992..11865268	1141..1417	100	->	Plus
arm_3R	11865337..11867527	1418..3609	99		Plus

Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 11:58:42 Download gff for RE33290.complete

Subject	Subject Range	Query Range	Percent	Splice	Strand
3R	15775419..15775937	1..519	99	->	Plus
3R	15779418..15780038	520..1140	100	->	Plus
3R	15780101..15780377	1141..1417	100	->	Plus
3R	15780446..15782636	1418..3609	99		Plus

RE33290.pep Sequence

Translation from 492 to 2114

> RE33290.pep
MGILLSDGDSTSDQQSTRDYPHFSGDYQNVTLSAASASTSASASATHVAA
VKMYHSSAVAAYTDLAAAGSAASAGVGVGVSGYHQQAVNAPVYVPSNRQY
NHVAAHFGSAAAQNAWTTEGFGSAHAQFYSPNAAVMMGSWRSAYDPSGFQ
RSSPYESAMDFQFGEGRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMN
GMNRPLIKPSKRLVSATATRRMGLCCTNCGTRTTTLWRRNNDGEPVCNAC
GLYYKLHGVNRPLAMRKDGIQTRKRKPKKTGSGSAVGAGTGSGTGSTLEA
IKECKEEHDLKPSLSLERHSLSKLHTDMKSGTSSSSTLMGHHSAQQQQQQ
QQQQQQQQQQQQQQSAHQQCFPLYGQTTTQQQHQQHGHSMTSSSGQAHLS
ARHLHGAAGTQLYTPGSSSGGGSASAYTSHSAETPALSNGTPSPHYQHHH
HLGGTHGHHVTAAAAHHHFHAAAAVAAYGVKTEASATNYDYVNNCYFGGT
FGALGGAATTTAMAGGAASELAGYHHQHNVIQAAKLMATS*

RE33290.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 05:44:35

Subject	Length	Description	Subject Range	Query Range	Score	Percent	Strand
Dana\GF11891-PA	551	GF11891-PA	1..551	1..540	1768	77.5	Plus
Dana\GF16170-PA	703	GF16170-PA	466..587	151..275	508	71.1	Plus
Dana\GF11880-PA	710	GF11880-PA	457..564	168..281	308	48.2	Plus
Dana\GF11857-PA	1271	GF11857-PA	806..875	210..282	273	64.4	Plus
Dana\GF15767-PA	810	GF15767-PA	643..720	205..279	243	56.4	Plus

Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 05:44:38

Subject	Length	Description	Subject Range	Query Range	Score	Percent	Strand
Dere\GG16973-PA	535	GG16973-PA	1..535	1..540	2020	93.9	Plus
Dere\GG17473-PA	487	GG17473-PA	255..371	162..275	506	75.2	Plus
Dere\GG16970-PA	749	GG16970-PA	495..601	168..281	292	47.4	Plus
Dere\GG16969-PA	1244	GG16969-PA	780..902	210..312	288	46.8	Plus
Dere\GG10108-PA	838	GG10108-PA	687..743	223..279	239	64.9	Plus

Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 05:44:43

Subject	Length	Description	Subject Range	Query Range	Score	Percent	Strand
Dgri\GH18759-PA	528	GH18759-PA	1..528	1..540	1548	71.5	Plus
Dgri\GH19248-PA	696	GH19248-PA	459..580	151..275	511	71.1	Plus
Dgri\GH18758-PA	749	GH18758-PA	514..581	215..282	283	66.2	Plus
Dgri\GH18757-PA	978	GH18757-PA	496..565	210..282	275	65.8	Plus
Dgri\GH13551-PA	911	GH13551-PA	747..800	226..279	240	72.2	Plus
Dgri\GH18758-PA	749	GH18758-PA	506..562	150..206	156	49.1	Plus

Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:02:46

Subject	Length	Description	Subject Range	Query Range	Score	Percent	Strand
pnr-PA	540	CG3978-PA	1..540	1..540	2878	100	Plus
pnr-PC	537	CG3978-PC	1..537	1..540	2852	99.4	Plus
pnr-PD	488	CG3978-PD	1..488	53..540	2622	100	Plus
pnr-PB	488	CG3978-PB	1..488	53..540	2622	100	Plus
srp-PE	731	CG3992-PE	32..571	14..484	586	34.2	Plus
srp-PB	1249	CG3992-PB	550..1089	14..484	586	34.2	Plus
grn-PB	699	CG9656-PB	265..618	6..302	529	38.8	Plus
grn-PC	712	CG9656-PC	265..618	6..302	529	38.8	Plus
grn-PA	486	CG9656-PA	239..405	147..302	505	60.5	Plus
srp-PF	746	CG3992-PF	116..586	42..484	349	29.6	Plus
srp-PD	746	CG3992-PD	116..586	42..484	349	29.6	Plus
srp-PA	1264	CG3992-PA	634..1104	42..484	349	29.6	Plus
srp-PG	469	CG3992-PG	116..447	42..410	290	29.6	Plus
GATAe-PC	731	CG10278-PC	472..579	168..281	281	49.6	Plus
GATAe-PB	731	CG10278-PB	472..579	168..281	281	49.6	Plus
GATAe-PA	746	CG10278-PA	487..594	168..281	281	49.6	Plus
GATAd-PC	842	CG5034-PC	674..745	208..279	228	56.9	Plus
GATAd-PB	842	CG5034-PB	674..745	208..279	228	56.9	Plus
GATAd-PA	842	CG5034-PA	674..745	208..279	228	56.9	Plus
CG43689-PF	1251	CG43689-PF	538..727	340..526	189	33	Plus
CG43689-PD	1309	CG43689-PD	596..785	340..526	189	33	Plus
CG43689-PC	1332	CG43689-PC	619..808	340..526	189	33	Plus
CG43689-PH	1618	CG43689-PH	508..697	340..526	189	33	Plus
CG43689-PI	1648	CG43689-PI	538..727	340..526	189	33	Plus
CG43689-PG	1648	CG43689-PG	538..727	340..526	189	33	Plus
CG43689-PE	1706	CG43689-PE	596..785	340..526	189	33	Plus
CHES-1-like-PC	1267	CG12690-PC	4..459	9..519	187	23.1	Plus
CHES-1-like-PD	1268	CG12690-PD	4..459	9..519	187	23.1	Plus
CHES-1-like-PB	1268	CG12690-PB	4..459	9..519	187	23.1	Plus
CHES-1-like-PA	1268	CG12690-PA	4..459	9..519	187	23.1	Plus
org-1-PB	699	CG11202-PB	471..686	326..527	181	31.8	Plus
org-1-PA	699	CG11202-PA	471..686	326..527	181	31.8	Plus
grn-PB	699	CG9656-PB	215..444	294..524	180	29.2	Plus
grn-PC	712	CG9656-PC	215..444	294..524	180	29.2	Plus
abd-A-PB	590	CG10325-PB	68..290	291..519	177	30.8	Plus
Sp1-PB	520	CG1343-PB	342..490	282..405	175	38.3	Plus
Sp1-PD	715	CG1343-PD	537..685	282..405	175	38.3	Plus
Sp1-PE	720	CG1343-PE	542..690	282..405	175	38.3	Plus
Sp1-PF	726	CG1343-PF	537..685	282..405	175	38.3	Plus
rn-PC	692	CG42277-PC	381..592	246..443	174	30	Plus
rn-PF	927	CG42277-PF	616..827	246..443	174	30	Plus
rn-PE	946	CG42277-PE	635..846	246..443	174	30	Plus
rn-PG	952	CG42277-PG	635..846	246..443	174	30	Plus
CG5466-PA	594	CG5466-PA	208..441	258..467	167	25.8	Plus
CG43736-PG	1143	CG43736-PG	943..1104	316..477	165	32.8	Plus
CG43736-PF	1228	CG43736-PF	1028..1189	316..477	165	32.8	Plus
opa-PA	609	CG1133-PA	403..609	269..478	164	29.7	Plus
Smr-PG	3607	CG4013-PG	220..427	341..522	163	29.9	Plus
CG43689-PF	1251	CG43689-PF	785..894	322..444	159	35	Plus
CG43689-PD	1309	CG43689-PD	843..952	322..444	159	35	Plus
CG43689-PC	1332	CG43689-PC	866..975	322..444	159	35	Plus
CG43689-PH	1618	CG43689-PH	755..864	322..444	159	35	Plus
CG43689-PI	1648	CG43689-PI	785..894	322..444	159	35	Plus
CG43689-PG	1648	CG43689-PG	785..894	322..444	159	35	Plus
CG43689-PE	1706	CG43689-PE	843..952	322..444	159	35	Plus
brk-PA	704	CG9653-PA	17..220	276..475	159	26.2	Plus
Tlk-PG	1489	CG34412-PG	166..430	231..458	158	26.6	Plus
Eip74EF-PA	829	CG32180-PA	544..660	330..436	157	37.6	Plus
Eip74EF-PE	844	CG32180-PE	559..675	330..436	157	37.6	Plus
Eip74EF-PC	868	CG32180-PC	583..699	330..436	157	37.6	Plus

Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 05:44:48

Subject	Length	Description	Subject Range	Query Range	Score	Percent	Strand
Dmoj\GI22649-PA	517	GI22649-PA	1..517	1..540	1677	73.6	Plus
Dmoj\GI24284-PA	378	GI24284-PA	138..262	154..275	511	72	Plus
Dmoj\GI22648-PA	750	GI22648-PA	410..583	116..282	300	37.6	Plus
Dmoj\GI22647-PA	1005	GI22647-PA	484..553	210..282	276	65.8	Plus
Dmoj\GI18290-PA	469	GI18290-PA	405..459	223..277	235	67.3	Plus

Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 05:44:51

Subject	Length	Description	Subject Range	Query Range	Score	Percent	Strand
Dper\GL12215-PA	532	GL12215-PA	1..532	1..540	1809	80.1	Plus
Dper\GL23278-PA	705	GL23278-PA	468..589	151..275	510	71.1	Plus
Dper\GL12213-PA	760	GL12213-PA	490..597	170..281	301	49.1	Plus
Dper\GL12212-PA	1126	GL12212-PA	820..887	210..280	273	67.6	Plus
Dper\GL19159-PA	803	GL19159-PA	653..709	223..279	238	64.9	Plus

Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 05:44:55

Subject	Length	Description	Subject Range	Query Range	Score	Percent	Strand
Dpse\GA17817-PA	532	GA17817-PA	1..532	1..540	1809	80.1	Plus
Dpse\GA17817-PB	496	GA17817-PB	1..496	53..540	1699	83.1	Plus
Dpse\GA26230-PB	1295	GA26230-PB	734..869	145..280	537	68.3	Plus
Dpse\GA21945-PB	488	GA21945-PB	246..372	152..275	510	70.9	Plus
Dpse\GA21945-PA	699	GA21945-PA	462..583	151..275	510	71.1	Plus

Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 05:44:58

Subject	Length	Description	Subject Range	Query Range	Score	Percent	Strand
Dsec\GM24279-PA	494	GM24279-PA	1..494	1..540	1982	87.8	Plus
Dsec\GM26366-PA	703	GM26366-PA	466..587	151..275	512	71.1	Plus
Dsec\GM24276-PA	733	GM24276-PA	478..585	168..281	305	50	Plus
Dsec\GM24275-PA	1238	GM24275-PA	778..896	210..317	274	48.8	Plus
Dsec\GM18170-PA	844	GM18170-PA	672..749	205..279	243	56.4	Plus

Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 05:45:00

Subject	Length	Description	Subject Range	Query Range	Score	Percent	Strand
Dsim\GD19066-PA	736	GD19066-PA	477..584	168..281	303	49.1	Plus
Dsim\GD19064-PA	696	GD19064-PA	568..635	210..280	269	67.6	Plus
Dsim\GD20889-PA	292	GD20889-PA	118..176	217..275	256	72.9	Plus
Dsim\GD23678-PA	844	GD23678-PA	672..749	205..279	244	56.4	Plus

Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 05:45:05

Subject	Length	Description	Subject Range	Query Range	Score	Percent	Strand
Dvir\GJ23378-PA	520	GJ23378-PA	1..520	1..540	1575	72.6	Plus
Dvir\GJ23061-PA	686	GJ23061-PA	449..570	151..275	511	71.1	Plus
Dvir\GJ23377-PA	771	GJ23377-PA	499..613	166..281	297	48.3	Plus
Dvir\GJ23376-PA	1236	GJ23376-PA	699..768	210..282	279	67.1	Plus
Dvir\GJ18119-PA	860	GJ18119-PA	688..751	216..279	246	62.5	Plus

Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 05:45:09

Subject	Length	Description	Subject Range	Query Range	Score	Percent	Strand
Dwil\GK13255-PA	550	GK13255-PA	1..550	1..540	1441	63.2	Plus
Dwil\GK12883-PA	491	GK12883-PA	252..376	154..275	510	71.2	Plus
Dwil\GK22843-PA	1047	GK22843-PA	709..773	210..277	269	67.6	Plus
Dwil\GK13254-PA	746	GK13254-PA	472..678	170..356	247	34.9	Plus
Dwil\GK18561-PA	858	GK18561-PA	699..752	226..279	237	70.4	Plus

Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 05:45:13

Subject	Length	Description	Subject Range	Query Range	Score	Percent	Strand
Dyak\GE24361-PA	540	GE24361-PA	1..540	1..540	2016	94.1	Plus
Dyak\GE24873-PA	707	GE24873-PA	470..591	151..275	512	71.1	Plus
Dyak\GE24358-PA	738	GE24358-PA	483..590	168..281	301	49.1	Plus
Dyak\GE24357-PA	1272	GE24357-PA	794..913	210..312	268	45.5	Plus
Dyak\GE18923-PA	838	GE18923-PA	666..743	205..279	242	56.4	Plus

RE33290.hyp Sequence

Translation from 492 to 2114

> RE33290.hyp
MGILLSDGDSTSDQQSTRDYPHFSGDYQNVTLSAASASTSASASATHVAA
VKMYHSSAVAAYTDLAAAGSAASAGVGVGVSGYHQQAVNAPVYVPSNRQY
NHVAAHFGSAAAQNAWTTEGFGSAHAQFYSPNAAVMMGSWRSAYDPSGFQ
RSSPYESAMDFQFGEGRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMN
GMNRPLIKPSKRLVSATATRRMGLCCTNCGTRTTTLWRRNNDGEPVCNAC
GLYYKLHGVNRPLAMRKDGIQTRKRKPKKTGSGSAVGAGTGSGTGSTLEA
IKECKEEHDLKPSLSLERHSLSKLHTDMKSGTSSSSTLMGHHSAQQQQQQ
QQQQQQQQQQQQQQSAHQQCFPLYGQTTTQQQHQQHGHSMTSSSGQAHLS
ARHLHGAAGTQLYTPGSSSGGGSASAYTSHSAETPALSNGTPSPHYQHHH
HLGGTHGHHVTAAAAHHHFHAAAAVAAYGVKTEASATNYDYVNNCYFGGT
FGALGGAATTTAMAGGAASELAGYHHQHNVIQAAKLMATS*

RE33290.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:27:14

Subject	Length	Description	Subject Range	Query Range	Score	Percent	Strand
pnr-PA	540	CG3978-PA	1..540	1..540	2878	100	Plus
pnr-PC	537	CG3978-PC	1..537	1..540	2852	99.4	Plus
pnr-PD	488	CG3978-PD	1..488	53..540	2622	100	Plus
pnr-PB	488	CG3978-PB	1..488	53..540	2622	100	Plus
srp-PE	731	CG3992-PE	32..571	14..484	586	34.2	Plus

Library:	RE
Tissue Source:	Drosophila melanogaster embryo
Created by:	Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:	2000-10-23
Comments:	Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:	332
Well:	90
Vector:	pFlc-1
Associated Gene/Transcript	pnr-RA
Protein status:	RE33290.pep: gold
Sequenced Size:	3625

Clone RE33290 Report

Clone and Library Details

Associated Genes

Clone Sequence Records

RE33290.complete Sequence

RE33290.complete Blast Records

RE33290.complete Sim4 Records

RE33290.pep Sequence

RE33290.pep Blast Records

RE33290.hyp Sequence

RE33290.hyp Blast Records