BDGP Sequence Production Resources |
Search the DGRC for RE33302
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 333 |
Well: | 2 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG9386-RA |
Protein status: | RE33302.pep: validated full length |
Preliminary Size: | 1493 |
Sequenced Size: | 1640 |
Gene | Date | Evidence |
---|---|---|
CG9386 | 2001-12-14 | Blastp of sequenced clone |
CG9386 | 2002-01-01 | Sim4 clustering to Release 2 |
CG9386 | 2003-01-01 | Sim4 clustering to Release 3 |
CG9386 | 2008-04-29 | Release 5.5 accounting |
CG9386 | 2008-08-15 | Release 5.9 accounting |
CG9386 | 2008-12-18 | 5.12 accounting |
1640 bp (1640 high quality bases) assembled on 2001-12-14
GenBank Submission: AY071306
> RE33302.complete GTAGAAGAAGCACAATTCTGGCAAGCGATTGGAATACTGATCAAAAACTA TCATGCTTTGAATAAAAAGATATTCGAGGTAGTCATTACCCAAGTGACAA AGCAGCAGAATGGGCGAGTGTGTGAATCCAGTGCGGAGGAGTTGGCGATG TCTCTAAAAGAGGATCCAAGCCAGCGCACGTGCACAGGATTTACGATCGG ATTCAAACTGCTGTCCAAGAAACTGGCGGAAAACATCCTAGGCACCGGAA TTGTGGATTTTGAGAATTGTCTCTATGAGTGCCAATTTGCCAGCGATAGC ATTGAAGGCTTTTCCGTGGGCCTCCTTGGAGGAGAGTTTAAACTGAAGTC CAAATCGAACACCAACTGGTTGGAATTTGTGCTCAGACCAAAGCTCTTAA GCTGGTCTCAGTCCAAGCAGGATGAAGCAAAGGTGAAGTCACTAGGTTTG GTTAATGTGGAAAAGTACAATGATCTGTACAAGGAGTTGAAACAGAGGCA TTCACAACGCCTGCTGGAACACTGGAAGACCGCACAGGAGTCCACGGATC CGCTCAAGTTCATTTACGAGGATTTGGCTATCGCTGCTTATCTTATAGTT TTGTGGAGTCAAACACAATCGGAGCCCACTGCCTTCGCTGATTTGGGTTG TGGAAACGGTCTGTTAGTTCATGTCCTCAACGCCGAGGGCTACAAAGGGT ATGGCTACGATATAAGAAAGCGAAAGCTATGGTCCCTCTATCCACCGGAT ACCCAAAGGAGCCTCATTGAAAAGGCCGTGGAGCCCAACAGCTTCCGCTT GGATTTTCCGGGTGTGGATTGGTTGATTGGTAACCATTCGGACGAGTTGT CTCCTTGGCTACCGGTTTTGGCTGGTCGTTTGAACATTAACTATTTCCTA CTGCCCTGCTGTCCCTTTGAACTGTCGGGAGCCAAGTTTCGCAGGCGGAA TACGAAGATAAGTGCCTACCAGGATTTCTTTCAATACGTCACTCAGGTCT CTCATGAATGTGGCTATGAGATCCTACAAGACCGTCTAAAAATACCAAGC ACCAAGCGATTGGCTCTGCTGGGAATTAAGAGAAAAGCCTCAAAGGCTAT TGAAGATCTGGAGTACTTTGTCCAAGAAGAGCTAAGAAAGTATAAGACCG GAGATGCCAAAATTAAGCTGCGCGAGAAGGAGGAGAGCGTTCGAAATTGC ACGCAGGTGGATAAGACCATAATTGATGGTCTAGTGTTTAAGATCTTCAA ACTGATTCTGGACTCTAACGAAGATAAATGGTCTGGTCGTCTGCCCATGA GAGAGATTGCCCAGGCTCTCACCAAGGAGGAGCTGAGTGGCATTAAATCC GAGTGCGGCGGCATCAAAACATTGCTGCGCAATAAACACGAAGTTTTCGA ATTCTGCGGTGGTGATCTCATAGGAATAAGAACCCCTAAACCAACGGCTA CTCTCCCCAAATCCCATTTGACCATCAAGAAACGTAGCTGCTTTTTCAAG CTTCATCATCCGCTGGGATGTCCTCTCGATGATGCTGAGTGCTCGTTTAT ACACTAAGCTAACTCTCTATGTGTGTGGTATTTGCTCACCTTTATTATTT GGATTATAATATAAAGAAAAGTGCAAAAAAAAAAAAAAAA
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 5379528..5380895 | 257..1624 | 99 | <- | Minus |
chr3R | 5380957..5381212 | 1..256 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9386-RA | 10..1566 | 1..1557 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9386-RA | 10..1566 | 1..1557 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9386-RA | 10..1566 | 1..1557 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9386-RA | 10..1566 | 1..1557 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9386-RA | 10..1566 | 1..1557 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9386-RA | 10..1633 | 1..1624 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9386-RA | 10..1633 | 1..1624 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9386-RA | 29..1652 | 1..1624 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9386-RA | 10..1633 | 1..1624 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9386-RA | 29..1652 | 1..1624 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 9553696..9555063 | 257..1624 | 100 | <- | Minus |
3R | 9555125..9555380 | 1..256 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 9553696..9555063 | 257..1624 | 100 | <- | Minus |
3R | 9555125..9555380 | 1..256 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 9553696..9555063 | 257..1624 | 100 | <- | Minus |
3R | 9555125..9555380 | 1..256 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 5379418..5380785 | 257..1624 | 100 | <- | Minus |
arm_3R | 5380847..5381102 | 1..256 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 9294527..9295894 | 257..1624 | 100 | <- | Minus |
3R | 9295956..9296211 | 1..256 | 100 | Minus |
Translation from 0 to 1556
> RE33302.hyp VEEAQFWQAIGILIKNYHALNKKIFEVVITQVTKQQNGRVCESSAEELAM SLKEDPSQRTCTGFTIGFKLLSKKLAENILGTGIVDFENCLYECQFASDS IEGFSVGLLGGEFKLKSKSNTNWLEFVLRPKLLSWSQSKQDEAKVKSLGL VNVEKYNDLYKELKQRHSQRLLEHWKTAQESTDPLKFIYEDLAIAAYLIV LWSQTQSEPTAFADLGCGNGLLVHVLNAEGYKGYGYDIRKRKLWSLYPPD TQRSLIEKAVEPNSFRLDFPGVDWLIGNHSDELSPWLPVLAGRLNINYFL LPCCPFELSGAKFRRRNTKISAYQDFFQYVTQVSHECGYEILQDRLKIPS TKRLALLGIKRKASKAIEDLEYFVQEELRKYKTGDAKIKLREKEESVRNC TQVDKTIIDGLVFKIFKLILDSNEDKWSGRLPMREIAQALTKEELSGIKS ECGGIKTLLRNKHEVFEFCGGDLIGIRTPKPTATLPKSHLTIKKRSCFFK LHHPLGCPLDDAECSFIH*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG9386-PA | 521 | CG9386-PA | 4..521 | 1..518 | 2721 | 100 | Plus |
Translation from 147 to 1556
> RE33302.pep MSLKEDPSQRTCTGFTIGFKLLSKKLAENILGTGIVDFENCLYECQFASD SIEGFSVGLLGGEFKLKSKSNTNWLEFVLRPKLLSWSQSKQDEAKVKSLG LVNVEKYNDLYKELKQRHSQRLLEHWKTAQESTDPLKFIYEDLAIAAYLI VLWSQTQSEPTAFADLGCGNGLLVHVLNAEGYKGYGYDIRKRKLWSLYPP DTQRSLIEKAVEPNSFRLDFPGVDWLIGNHSDELSPWLPVLAGRLNINYF LLPCCPFELSGAKFRRRNTKISAYQDFFQYVTQVSHECGYEILQDRLKIP STKRLALLGIKRKASKAIEDLEYFVQEELRKYKTGDAKIKLREKEESVRN CTQVDKTIIDGLVFKIFKLILDSNEDKWSGRLPMREIAQALTKEELSGIK SECGGIKTLLRNKHEVFEFCGGDLIGIRTPKPTATLPKSHLTIKKRSCFF KLHHPLGCPLDDAECSFIH*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF16537-PA | 518 | GF16537-PA | 54..518 | 3..469 | 1923 | 75.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG17362-PA | 521 | GG17362-PA | 53..521 | 1..469 | 2298 | 90.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH19304-PA | 547 | GH19304-PA | 57..547 | 3..469 | 1688 | 66.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG9386-PA | 521 | CG9386-PA | 53..521 | 1..469 | 2474 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI23521-PA | 545 | GI23521-PA | 58..545 | 3..469 | 1615 | 63.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL21500-PA | 525 | GL21500-PA | 55..525 | 2..469 | 1936 | 76.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA21749-PA | 525 | GA21749-PA | 55..525 | 2..469 | 1936 | 76.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM26247-PA | 521 | GM26247-PA | 54..521 | 2..469 | 2397 | 94.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ10272-PA | 548 | GJ10272-PA | 57..548 | 3..469 | 1624 | 63.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK11817-PA | 520 | GK11817-PA | 55..520 | 2..469 | 1694 | 67.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE24767-PA | 521 | GE24767-PA | 53..521 | 1..469 | 2326 | 91.9 | Plus |