Clone RE33302 Report

Search the DGRC for RE33302

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:333
Well:2
Vector:pFlc-1
Associated Gene/TranscriptCG9386-RA
Protein status:RE33302.pep: validated full length
Preliminary Size:1493
Sequenced Size:1640

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9386 2001-12-14 Blastp of sequenced clone
CG9386 2002-01-01 Sim4 clustering to Release 2
CG9386 2003-01-01 Sim4 clustering to Release 3
CG9386 2008-04-29 Release 5.5 accounting
CG9386 2008-08-15 Release 5.9 accounting
CG9386 2008-12-18 5.12 accounting

Clone Sequence Records

RE33302.complete Sequence

1640 bp (1640 high quality bases) assembled on 2001-12-14

GenBank Submission: AY071306

> RE33302.complete
GTAGAAGAAGCACAATTCTGGCAAGCGATTGGAATACTGATCAAAAACTA
TCATGCTTTGAATAAAAAGATATTCGAGGTAGTCATTACCCAAGTGACAA
AGCAGCAGAATGGGCGAGTGTGTGAATCCAGTGCGGAGGAGTTGGCGATG
TCTCTAAAAGAGGATCCAAGCCAGCGCACGTGCACAGGATTTACGATCGG
ATTCAAACTGCTGTCCAAGAAACTGGCGGAAAACATCCTAGGCACCGGAA
TTGTGGATTTTGAGAATTGTCTCTATGAGTGCCAATTTGCCAGCGATAGC
ATTGAAGGCTTTTCCGTGGGCCTCCTTGGAGGAGAGTTTAAACTGAAGTC
CAAATCGAACACCAACTGGTTGGAATTTGTGCTCAGACCAAAGCTCTTAA
GCTGGTCTCAGTCCAAGCAGGATGAAGCAAAGGTGAAGTCACTAGGTTTG
GTTAATGTGGAAAAGTACAATGATCTGTACAAGGAGTTGAAACAGAGGCA
TTCACAACGCCTGCTGGAACACTGGAAGACCGCACAGGAGTCCACGGATC
CGCTCAAGTTCATTTACGAGGATTTGGCTATCGCTGCTTATCTTATAGTT
TTGTGGAGTCAAACACAATCGGAGCCCACTGCCTTCGCTGATTTGGGTTG
TGGAAACGGTCTGTTAGTTCATGTCCTCAACGCCGAGGGCTACAAAGGGT
ATGGCTACGATATAAGAAAGCGAAAGCTATGGTCCCTCTATCCACCGGAT
ACCCAAAGGAGCCTCATTGAAAAGGCCGTGGAGCCCAACAGCTTCCGCTT
GGATTTTCCGGGTGTGGATTGGTTGATTGGTAACCATTCGGACGAGTTGT
CTCCTTGGCTACCGGTTTTGGCTGGTCGTTTGAACATTAACTATTTCCTA
CTGCCCTGCTGTCCCTTTGAACTGTCGGGAGCCAAGTTTCGCAGGCGGAA
TACGAAGATAAGTGCCTACCAGGATTTCTTTCAATACGTCACTCAGGTCT
CTCATGAATGTGGCTATGAGATCCTACAAGACCGTCTAAAAATACCAAGC
ACCAAGCGATTGGCTCTGCTGGGAATTAAGAGAAAAGCCTCAAAGGCTAT
TGAAGATCTGGAGTACTTTGTCCAAGAAGAGCTAAGAAAGTATAAGACCG
GAGATGCCAAAATTAAGCTGCGCGAGAAGGAGGAGAGCGTTCGAAATTGC
ACGCAGGTGGATAAGACCATAATTGATGGTCTAGTGTTTAAGATCTTCAA
ACTGATTCTGGACTCTAACGAAGATAAATGGTCTGGTCGTCTGCCCATGA
GAGAGATTGCCCAGGCTCTCACCAAGGAGGAGCTGAGTGGCATTAAATCC
GAGTGCGGCGGCATCAAAACATTGCTGCGCAATAAACACGAAGTTTTCGA
ATTCTGCGGTGGTGATCTCATAGGAATAAGAACCCCTAAACCAACGGCTA
CTCTCCCCAAATCCCATTTGACCATCAAGAAACGTAGCTGCTTTTTCAAG
CTTCATCATCCGCTGGGATGTCCTCTCGATGATGCTGAGTGCTCGTTTAT
ACACTAAGCTAACTCTCTATGTGTGTGGTATTTGCTCACCTTTATTATTT
GGATTATAATATAAAGAAAAGTGCAAAAAAAAAAAAAAAA

RE33302.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:41:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG9386-RA 1708 CG9386-RA 26..1651 1..1626 8130 100 Plus
RnpS1-RA 1539 RnpS1-RA 1395..1539 1626..1482 725 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 20:15:06
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 5379528..5380896 1624..256 6830 99.9 Minus
chr3R 27901430 chr3R 5380957..5381212 256..1 1280 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:50:16 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 20:15:04
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9553694..9555064 1626..256 6855 100 Minus
3R 32079331 3R 9555125..9555380 256..1 1280 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:08:30
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 9294525..9295895 1626..256 6855 100 Minus
3R 31820162 3R 9295956..9296211 256..1 1280 100 Minus
Blast to na_te.dros performed on 2019-03-15 20:15:05 has no hits.

RE33302.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 20:16:15 Download gff for RE33302.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 5379528..5380895 257..1624 99 <- Minus
chr3R 5380957..5381212 1..256 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:10:19 Download gff for RE33302.complete
Subject Subject Range Query Range Percent Splice Strand
CG9386-RA 10..1566 1..1557 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:06:40 Download gff for RE33302.complete
Subject Subject Range Query Range Percent Splice Strand
CG9386-RA 10..1566 1..1557 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 05:09:39 Download gff for RE33302.complete
Subject Subject Range Query Range Percent Splice Strand
CG9386-RA 10..1566 1..1557 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:31:10 Download gff for RE33302.complete
Subject Subject Range Query Range Percent Splice Strand
CG9386-RA 10..1566 1..1557 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:18:41 Download gff for RE33302.complete
Subject Subject Range Query Range Percent Splice Strand
CG9386-RA 10..1566 1..1557 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:35:05 Download gff for RE33302.complete
Subject Subject Range Query Range Percent Splice Strand
CG9386-RA 10..1633 1..1624 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:06:40 Download gff for RE33302.complete
Subject Subject Range Query Range Percent Splice Strand
CG9386-RA 10..1633 1..1624 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:09:39 Download gff for RE33302.complete
Subject Subject Range Query Range Percent Splice Strand
CG9386-RA 29..1652 1..1624 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:31:11 Download gff for RE33302.complete
Subject Subject Range Query Range Percent Splice Strand
CG9386-RA 10..1633 1..1624 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:18:41 Download gff for RE33302.complete
Subject Subject Range Query Range Percent Splice Strand
CG9386-RA 29..1652 1..1624 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:16:15 Download gff for RE33302.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9553696..9555063 257..1624 100 <- Minus
3R 9555125..9555380 1..256 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:16:15 Download gff for RE33302.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9553696..9555063 257..1624 100 <- Minus
3R 9555125..9555380 1..256 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:16:15 Download gff for RE33302.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9553696..9555063 257..1624 100 <- Minus
3R 9555125..9555380 1..256 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:09:39 Download gff for RE33302.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5379418..5380785 257..1624 100 <- Minus
arm_3R 5380847..5381102 1..256 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:07:39 Download gff for RE33302.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9294527..9295894 257..1624 100 <- Minus
3R 9295956..9296211 1..256 100   Minus

RE33302.hyp Sequence

Translation from 0 to 1556

> RE33302.hyp
VEEAQFWQAIGILIKNYHALNKKIFEVVITQVTKQQNGRVCESSAEELAM
SLKEDPSQRTCTGFTIGFKLLSKKLAENILGTGIVDFENCLYECQFASDS
IEGFSVGLLGGEFKLKSKSNTNWLEFVLRPKLLSWSQSKQDEAKVKSLGL
VNVEKYNDLYKELKQRHSQRLLEHWKTAQESTDPLKFIYEDLAIAAYLIV
LWSQTQSEPTAFADLGCGNGLLVHVLNAEGYKGYGYDIRKRKLWSLYPPD
TQRSLIEKAVEPNSFRLDFPGVDWLIGNHSDELSPWLPVLAGRLNINYFL
LPCCPFELSGAKFRRRNTKISAYQDFFQYVTQVSHECGYEILQDRLKIPS
TKRLALLGIKRKASKAIEDLEYFVQEELRKYKTGDAKIKLREKEESVRNC
TQVDKTIIDGLVFKIFKLILDSNEDKWSGRLPMREIAQALTKEELSGIKS
ECGGIKTLLRNKHEVFEFCGGDLIGIRTPKPTATLPKSHLTIKKRSCFFK
LHHPLGCPLDDAECSFIH*

RE33302.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:37:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG9386-PA 521 CG9386-PA 4..521 1..518 2721 100 Plus

RE33302.pep Sequence

Translation from 147 to 1556

> RE33302.pep
MSLKEDPSQRTCTGFTIGFKLLSKKLAENILGTGIVDFENCLYECQFASD
SIEGFSVGLLGGEFKLKSKSNTNWLEFVLRPKLLSWSQSKQDEAKVKSLG
LVNVEKYNDLYKELKQRHSQRLLEHWKTAQESTDPLKFIYEDLAIAAYLI
VLWSQTQSEPTAFADLGCGNGLLVHVLNAEGYKGYGYDIRKRKLWSLYPP
DTQRSLIEKAVEPNSFRLDFPGVDWLIGNHSDELSPWLPVLAGRLNINYF
LLPCCPFELSGAKFRRRNTKISAYQDFFQYVTQVSHECGYEILQDRLKIP
STKRLALLGIKRKASKAIEDLEYFVQEELRKYKTGDAKIKLREKEESVRN
CTQVDKTIIDGLVFKIFKLILDSNEDKWSGRLPMREIAQALTKEELSGIK
SECGGIKTLLRNKHEVFEFCGGDLIGIRTPKPTATLPKSHLTIKKRSCFF
KLHHPLGCPLDDAECSFIH*

RE33302.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 20:52:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16537-PA 518 GF16537-PA 54..518 3..469 1923 75.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 20:52:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17362-PA 521 GG17362-PA 53..521 1..469 2298 90.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 20:52:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19304-PA 547 GH19304-PA 57..547 3..469 1688 66.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:39:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG9386-PA 521 CG9386-PA 53..521 1..469 2474 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 20:52:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23521-PA 545 GI23521-PA 58..545 3..469 1615 63.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 20:52:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21500-PA 525 GL21500-PA 55..525 2..469 1936 76.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 20:52:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21749-PA 525 GA21749-PA 55..525 2..469 1936 76.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 20:52:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26247-PA 521 GM26247-PA 54..521 2..469 2397 94.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 20:52:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10272-PA 548 GJ10272-PA 57..548 3..469 1624 63.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 20:52:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11817-PA 520 GK11817-PA 55..520 2..469 1694 67.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 20:52:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24767-PA 521 GE24767-PA 53..521 1..469 2326 91.9 Plus