BDGP Sequence Production Resources |
Search the DGRC for RE33426
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 334 |
Well: | 26 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Nop56-RA |
Protein status: | RE33426.pep: validated not full length |
Preliminary Size: | 1517 |
Sequenced Size: | 1767 |
Gene | Date | Evidence |
---|---|---|
CG13849 | 2002-10-10 | Blastp of sequenced clone |
CG13849 | 2003-01-01 | Sim4 clustering to Release 3 |
Nop56 | 2008-04-29 | Release 5.5 accounting |
Nop56 | 2008-08-15 | Release 5.9 accounting |
Nop56 | 2008-12-18 | 5.12 accounting |
1767 bp (1767 high quality bases) assembled on 2002-10-10
GenBank Submission: BT001613
> RE33426.complete GGCTTGCTATGGTCACACTTGAAGTAAGCACGTGGGAAAACAACTGTAGC AGCATCGTGGGTGTATAAAAATATATATTTCTTAATTAAATCGGCATATA TTCGGCATAGACATGTCGAACCTGTATGTGCTGTACGAGCATGCGGCGGG CTTCTCGCTCTTCTCCGTCAAGGAGTTCGAAGAGGTGTCCATGTTCCTGC CCCAGGTGGAGTCCTCGGTGACGGACCTCGCCAAGTTCAACTCAATTGTT AAGCTGGCTGGATTTGCACCTTTCAAGACGGCCATTGCCGCACTGGAAAA CATCAATGCCATATCCGAGGGCATAGTGCCGCAGGATCTGCTCTCCTTCT TGGATGACTTCTTTGCCAAGCTGAAGAAGAAGAAGTGCACCCTGGGTATT GCGGATGCCAAGCTGGGAGCTGCAATCACCGAGGCCATTGGCGTCCAGTG CAGTCACTTTGGAGTGGTTCCTGAGATTCTGCGCGGCGTGCGATTCCACT TCGCTAAGCTGGTCAAGGGATTCACCGACAAGTCCGCTGGCGTTGCTCAG CTGGGTCTGGGCCACAGCTACTCGCGTGCCAAGGTCAAGTTCAATGTTCA TCGTTCCGACAACATGATCATCCAGTCGATTGCTTTGCTGGATCAGTTGG ATAAGGACGTAAATACCTTCTCTATGCGGATACGCGAGTGGTACTCGTAT CACTTCCCAGAACTGGTCAAAATCGTTCCCGACAATTACATGTTCGCCAA GGCGGCCAAGTTCATCAAGGATCGCAAGAACCTCACGCAAGACCAGCTGG AGGATCTTGAGAAGATCGTCATGGACTCCGCCAAGGCTCAGGCTATCATT GGTGCCGCCAAGATGTCCATGGGCATGGACATCTCCATTGTTGATCTGAT GAACATTGAGCTGTTCGCAGAGCGCGTTGTCAAGCTTTCCGAGTACCGAA AGAAACTGTCTACCTACTTGCACAACAAGATGAACTTGGTGGCACCCAAT CTGCAGTCTTTGATTGGCGACCAGGTCGGTGCCCGCCTGATATCGCATGC CGGCAGCTTGACTAATCTGGCCAAGTACCCAGCATCTACAGTACAAATCC TGGGTGCCGAGAAGGCGCTCTTCCGTGCTCTAAAGACCCGCTCCAATACG CCCAAGTATGGTCTTATCTATCACTCCTCGTTCATTGGTCGAGCTGGCCT GAAGAACAAGGGTCGCATCTCTCGATTCCTGGCCAACAAGTGCTCCATCG CGTCGCGTATCGATTGCTTCCTGGAACAGCCGACTAGCGTGTTTGGCGAA ACTCTTAAGCAACAGGTCGAAGATCGCCTCAAGTTCTACGAGTCCGGCGA TGTGCCGCGCAAGAACATTGAGGTAATGAAGGAGGCCATCGAGGCAGCTG GTCAAGAGGCGGCAATCACTGTACAGTCCGAGAAAAAGAAGAAAAAGAAG AAGCGAGCGGCTGAAGACGAGGGCGAGACGAATGGCGCCAGTAATGGAAA CGGAGCAGCCGCCGAGGCGGAAAATGGCAATGGCAACGATGATGGAGAGC CAAAGAAGAAGAAGAAAAAGAAGAACAAAAACAAGGAAGCGGTGGAGGCG TAAATGTCTCTGTTACATTCAACTTAGTTTAAGTCCACACTATTATCTTT TACTTACATGCTTCTTTTGTATTTCCTTTGACCCCCTGATGGATCGCATT TCAAATAATAATAAACATATACTTTGGAGGGTATTCCCACCGGAATAAAA TAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 18242634..18243862 | 1746..518 | 5980 | 99.1 | Minus |
chr3R | 27901430 | chr3R | 18243926..18244330 | 519..115 | 1995 | 99.5 | Minus |
chr3R | 27901430 | chr3R | 18244493..18244607 | 115..1 | 545 | 98.3 | Minus |
chr2L | 23010047 | chr2L | 6916641..6916828 | 1212..1025 | 220 | 74.5 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 22419095..22420323 | 1746..518 | 6130 | 99.9 | Minus |
3R | 32079331 | 3R | 22420387..22420791 | 519..115 | 2025 | 100 | Minus |
3R | 32079331 | 3R | 22420954..22421068 | 115..1 | 575 | 100 | Minus |
2L | 23513712 | 2L | 6917542..6917729 | 1212..1025 | 220 | 74.5 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 22159926..22161154 | 1746..518 | 6130 | 99.9 | Minus |
3R | 31820162 | 3R | 22161218..22161622 | 519..115 | 2025 | 100 | Minus |
3R | 31820162 | 3R | 22161785..22161899 | 115..1 | 575 | 100 | Minus |
2L | 23513712 | 2L | 6917616..6917729 | 1138..1025 | 210 | 78.9 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 18242629..18243861 | 519..1751 | 98 | <- | Minus |
chr3R | 18243927..18244329 | 116..518 | 99 | <- | Minus |
chr3R | 18244493..18244607 | 1..115 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Nop56-RA | 1..1491 | 113..1603 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Nop56-RA | 1..1491 | 113..1603 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Nop56-RA | 1..1491 | 113..1603 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Nop56-RA | 1..1491 | 113..1603 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Nop56-RA | 1..1491 | 113..1603 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Nop56-RA | 1..1746 | 1..1746 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Nop56-RA | 1..1746 | 1..1746 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Nop56-RA | 1..1746 | 1..1746 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Nop56-RA | 1..1746 | 1..1746 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Nop56-RA | 1..1746 | 1..1746 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 22419090..22420322 | 519..1751 | 99 | <- | Minus |
3R | 22420388..22420790 | 116..518 | 100 | <- | Minus |
3R | 22420954..22421068 | 1..115 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 22419090..22420322 | 519..1751 | 99 | <- | Minus |
3R | 22420388..22420790 | 116..518 | 100 | <- | Minus |
3R | 22420954..22421068 | 1..115 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 22419090..22420322 | 519..1751 | 99 | <- | Minus |
3R | 22420388..22420790 | 116..518 | 100 | <- | Minus |
3R | 22420954..22421068 | 1..115 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 18244812..18246044 | 519..1751 | 99 | <- | Minus |
arm_3R | 18246110..18246512 | 116..518 | 100 | <- | Minus |
arm_3R | 18246676..18246790 | 1..115 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 22159921..22161153 | 519..1751 | 99 | <- | Minus |
3R | 22161219..22161621 | 116..518 | 100 | <- | Minus |
3R | 22161785..22161899 | 1..115 | 100 | Minus |
Translation from 112 to 1602
> RE33426.pep MSNLYVLYEHAAGFSLFSVKEFEEVSMFLPQVESSVTDLAKFNSIVKLAG FAPFKTAIAALENINAISEGIVPQDLLSFLDDFFAKLKKKKCTLGIADAK LGAAITEAIGVQCSHFGVVPEILRGVRFHFAKLVKGFTDKSAGVAQLGLG HSYSRAKVKFNVHRSDNMIIQSIALLDQLDKDVNTFSMRIREWYSYHFPE LVKIVPDNYMFAKAAKFIKDRKNLTQDQLEDLEKIVMDSAKAQAIIGAAK MSMGMDISIVDLMNIELFAERVVKLSEYRKKLSTYLHNKMNLVAPNLQSL IGDQVGARLISHAGSLTNLAKYPASTVQILGAEKALFRALKTRSNTPKYG LIYHSSFIGRAGLKNKGRISRFLANKCSIASRIDCFLEQPTSVFGETLKQ QVEDRLKFYESGDVPRKNIEVMKEAIEAAGQEAAITVQSEKKKKKKKRAA EDEGETNGASNGNGAAAEAENGNGNDDGEPKKKKKKKNKNKEAVEA*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF16568-PA | 495 | GF16568-PA | 1..495 | 1..496 | 2511 | 96.2 | Plus |
Dana\GF14470-PA | 512 | GF14470-PA | 1..404 | 4..414 | 817 | 42.5 | Plus |
Dana\GF23690-PA | 501 | GF23690-PA | 100..358 | 168..429 | 236 | 24.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG12519-PA | 497 | GG12519-PA | 1..497 | 1..496 | 2576 | 98.6 | Plus |
Dere\GG23571-PA | 508 | GG23571-PA | 1..404 | 4..414 | 828 | 42.5 | Plus |
Dere\GG15883-PA | 501 | GG15883-PA | 100..358 | 168..429 | 241 | 25.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH17505-PA | 498 | GH17505-PA | 1..481 | 1..480 | 2339 | 93.2 | Plus |
Dgri\GH13163-PA | 512 | GH13163-PA | 1..404 | 4..414 | 833 | 42.7 | Plus |
Dgri\GH14529-PA | 503 | GH14529-PA | 104..362 | 168..429 | 210 | 24.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Nop56-PA | 496 | CG13849-PA | 1..496 | 1..496 | 2481 | 99.8 | Plus |
nop5-PA | 511 | CG10206-PA | 1..487 | 4..495 | 846 | 40.2 | Plus |
Prp31-PA | 501 | CG6876-PA | 100..378 | 168..453 | 262 | 24.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI10373-PA | 500 | GI10373-PA | 2..500 | 1..496 | 2327 | 92 | Plus |
Dmoj\GI17742-PA | 520 | GI17742-PA | 1..404 | 4..414 | 824 | 42.7 | Plus |
Dmoj\GI13100-PA | 503 | GI13100-PA | 104..362 | 168..429 | 242 | 24.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL23339-PA | 500 | GL23339-PA | 1..500 | 1..496 | 2357 | 93.8 | Plus |
Dper\GL25602-PA | 517 | GL25602-PA | 1..404 | 4..414 | 823 | 43 | Plus |
Dper\GL24782-PA | 501 | GL24782-PA | 100..358 | 168..429 | 224 | 24 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\Nop56-PA | 503 | GA12569-PA | 1..503 | 1..496 | 2287 | 92.6 | Plus |
Dpse\GA28044-PA | 517 | GA28044-PA | 1..404 | 4..414 | 826 | 43 | Plus |
Dpse\GA19924-PA | 501 | GA19924-PA | 100..358 | 168..429 | 224 | 24 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM23654-PA | 496 | GM23654-PA | 1..496 | 1..496 | 2608 | 99.4 | Plus |
Dsec\GM13736-PA | 509 | GM13736-PA | 1..404 | 4..414 | 818 | 42.2 | Plus |
Dsec\GM25514-PA | 501 | GM25514-PA | 100..358 | 168..429 | 239 | 25.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD18461-PA | 496 | GD18461-PA | 1..496 | 1..496 | 2603 | 99.2 | Plus |
Dsim\GD22532-PA | 510 | GD22532-PA | 1..404 | 4..414 | 823 | 42.5 | Plus |
Dsim\GD14529-PA | 501 | GD14529-PA | 100..358 | 168..429 | 240 | 25.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ22835-PA | 498 | GJ22835-PA | 1..498 | 1..496 | 2325 | 92.8 | Plus |
Dvir\GJ17567-PA | 518 | GJ17567-PA | 1..404 | 4..414 | 851 | 43 | Plus |
Dvir\GJ13847-PA | 503 | GJ13847-PA | 104..362 | 168..429 | 240 | 24.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK14188-PA | 512 | GK14188-PA | 11..512 | 1..496 | 2329 | 93 | Plus |
Dwil\GK24250-PA | 516 | GK24250-PA | 1..404 | 4..414 | 823 | 42.8 | Plus |
Dwil\GK20402-PA | 504 | GK20402-PA | 103..361 | 168..429 | 247 | 25.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE24041-PA | 497 | GE24041-PA | 1..497 | 1..496 | 2578 | 98.8 | Plus |
Dyak\GE18393-PA | 509 | GE18393-PA | 1..404 | 4..414 | 840 | 42.8 | Plus |
Dyak\GE22227-PA | 501 | GE22227-PA | 100..358 | 168..429 | 241 | 25.3 | Plus |
Translation from 112 to 1602
> RE33426.hyp MSNLYVLYEHAAGFSLFSVKEFEEVSMFLPQVESSVTDLAKFNSIVKLAG FAPFKTAIAALENINAISEGIVPQDLLSFLDDFFAKLKKKKCTLGIADAK LGAAITEAIGVQCSHFGVVPEILRGVRFHFAKLVKGFTDKSAGVAQLGLG HSYSRAKVKFNVHRSDNMIIQSIALLDQLDKDVNTFSMRIREWYSYHFPE LVKIVPDNYMFAKAAKFIKDRKNLTQDQLEDLEKIVMDSAKAQAIIDAAK MSMGMDISIVDLMNIELFAERVVKLSEYRKKLSTYLHNKMNLVAPNLQSL IGDQVGARLISHAGSLTNLAKYPASTVQILGAEKALFRALKTRSNTPKYG LIYHSSFIGRAGLKNKGRISRFLANKCSIASRIDCFLEQPTSVFGETLKQ QVEDRLKFYESGDVPRKNIEVMKEAIEAAGQEAAITVQSEKKKKKKKRAA EDEGETNGASNGNGAAAEAENGNGNDDGEPKKKKKKKNKNKEAVEA*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Nop56-PA | 496 | CG13849-PA | 1..496 | 1..496 | 2488 | 100 | Plus |
nop5-PA | 511 | CG10206-PA | 1..487 | 4..495 | 850 | 40.2 | Plus |
Prp31-PA | 501 | CG6876-PA | 100..378 | 168..453 | 262 | 24.3 | Plus |