BDGP Sequence Production Resources |
Search the DGRC for RE33588
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 335 |
Well: | 88 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Gen-RA |
Protein status: | RE33588.pep: gold |
Preliminary Size: | 2181 |
Sequenced Size: | 2261 |
Gene | Date | Evidence |
---|---|---|
CG10670 | 2002-01-01 | Sim4 clustering to Release 2 |
CG10670 | 2002-06-26 | Blastp of sequenced clone |
CG10670 | 2003-01-01 | Sim4 clustering to Release 3 |
Gen | 2008-04-29 | Release 5.5 accounting |
Gen | 2008-08-15 | Release 5.9 accounting |
Gen | 2008-12-18 | 5.12 accounting |
2261 bp (2261 high quality bases) assembled on 2002-06-26
GenBank Submission: AY128475
> RE33588.complete AAATTTGTTGCGAATTTCTCGCGGGGTTTTTGTTTAGCTTATTTAAATGG GCGTCAAGGAATTATGGGGTGTTTTAACGCCCCATTGTGAACGTAAACCC ATTAATGAACTGCGGGGAAAGAAAGTGGCCATCGACCTGGCCGGCTGGGT GTGCGAATCTCTTAATGTTGTGGACTACTTTGTGCATCCAAGGCATCATT TAAAGAACCTCTTCTTTCGCACTTGCTACTTGATTTGGGAGCAAGTTACT CCGGTTTTCGTTTTGGAGGGAGTTGCTCCAAAACTCAAGAGCCAGGTGAT AGCCAAAAGGAATGAGCTCCAGTTTCGGGGAGTGAAGCCCAAGAATTCGC CTGAGTGCACCCAAAGTCAGCCGTCCAAGGGCGACAAGGGACGCAGCCGG TTCAACCATGTTCTCAAGCAGTGCGAAACGCTGCTGCTCTCCATGGGAAT CCAGTGCGTCCAAGGTCCCGGCGAGGCGGAGGCCTACTGTGCCTTTCTCA ACAAGCATGGCCTAGTGGACGGCGTCATTAGCCAGGACTCGGATTGCTTT GCCTATGGAGCCGTTCGTGTCTATCGCAACTTCTCCGTTTCCACCCAAGG AGCCCAGGCAGCCGCCGGCGGAGCTGTGGACATCTACGACATGCGGGAGA TCACATCCCGAATGGACTTTGGCCAACAGAAGATCATTGTGATGGCTTTG CTCTGCGGCTGTGATTATTGTCCTGATGGCATAGGTGGCATTGGCAAGGA TGGCGTCCTAAAGCTGTTCAACAAGTACAAGGAGACTGAGATTTTGGATA GAATGAGAAGCTGGCGTGGTGAAACCGATAAATACAATGCCTTGGAGATC CGAGTGGACGACAAATCCATCTGCAGCAATTGTGGCCACATTGGCAAGAC CCAGAGCCACACAAAAAGTGGCTGCAGTGTGTGTCGCACACACAAAGGCT GCGATGAGAGTCTCTGGAAAGAACAACGACTATCCATTAAGTCCGAGTTG ACTTTGAGGCGGAAAGCCCTATTATCTCCTGACTTTCCCAACGAAGAGAT CATTGCCGAGTTTCTCAGCGAACCCGACACCATTCCCAATCTAAATCTCA ACTGGCGGCAACCAAATCTTGTCAAATTCATCAAACAAATCGGACATCTC TTGCAGTGGCCAGAAATATACTGCTTCCAAAAGTTCTTTCCCATACTCAC ACGCTGGCAGGTGCAGCAATCGAAGCAGGAGAAGATACTTATCCAGCCAC ACGAGATTATCAAAAAGCGAACTGTGAAGGGTGTGCCCAGCTTAGAATTG CGCTGGCACGATCCCAGTGGCATCTTCAAGGGTCTTATTCCGGACAAGCA GATTGCGGAGTACGAAGCGGAGCATCCCAAGGGAATCGAGGAACTTTACT ACACCATTGAGCCATTGGACATGCTGGAGACAGCGTATCCCGATTTAGTA GCGGCCTTTTTGAAGTCGAAGGAGAAGCCCGCCAAGAAAACCACGCGAAA GAAGAAAACCGCATCTGAAGAGGAGAATAAGGAAAACGAGCCGAATTCGA AACCAAAGCGAGTGGTCAGAAAGATAAAGGCTCAGCCTGAAGAGAACCAG CCATTACTGCACCAATTCCTAGGGCGCAAGAAGGAAGGTACTCCGGTCAA GGCTCCCGCTCCGCAACGTCAGCAATGCTCCACCCCCATCACCAAGTTCC TGCCCTCCGATCTGGAAAGCGATTGCGATGCCGAAGAGTTCGATATGTCG GACATAGTTAAAGGCATTATCTCGAATCCGAATGCCAAGCCAGCACTGAC CAACCACGATGGTCACCAGCTTCATTACGAACCCATGGCGGAAGATTTGA GCTTACGTCTGGCGCAGATGAGTCTAGGAAATGTGAATGAATCGCCCAAA GTGGAAACGAAAAGAGATCTCTCTCAAGTGGATCAACTACCGCAGAGTAA GCGATTCTCCTTGGAGGACAGTTTTGATCTGCTGGTCAAGGGAGATCTGC AGAAGCTGGCCAGGACGCCAGTGGAGCGATTCAAGATGCAGCATCGCATC AGCGAAAAGATTCCAACGCCAGTGAAGCCCTTGGATAACATAAGTTACTT CTTCAATCAAAGTTCCGATAATGCGGATGTCTTTGAAGAGTTGATGAACT CCAGCTTGGTGCCCCAGGATCAAGAGGATAACGCAGAAGATGAGGAGGAG GATGACCTGGTAGTGATTAGTGATTAAAGATTCTGAAATTCCCTAAAAAA AAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Gen-RA | 2277 | Gen-RA | 30..2277 | 1..2248 | 11225 | 99.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 5142398..5143670 | 2242..970 | 6185 | 99.1 | Minus |
chr3L | 24539361 | chr3L | 5143962..5144251 | 801..512 | 1435 | 99.7 | Minus |
chr3L | 24539361 | chr3L | 5144317..5144623 | 511..205 | 1430 | 97.7 | Minus |
chr3L | 24539361 | chr3L | 5144690..5144894 | 205..1 | 980 | 98.5 | Minus |
chr3L | 24539361 | chr3L | 5143726..5143895 | 969..800 | 835 | 99.4 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 5149845..5151123 | 2248..970 | 6380 | 99.9 | Minus |
3L | 28110227 | 3L | 5151770..5152076 | 511..205 | 1535 | 100 | Minus |
3L | 28110227 | 3L | 5151415..5151704 | 801..512 | 1450 | 100 | Minus |
3L | 28110227 | 3L | 5152143..5152347 | 205..1 | 1025 | 100 | Minus |
3L | 28110227 | 3L | 5151179..5151348 | 969..800 | 850 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 5142945..5144223 | 2248..970 | 6380 | 99.9 | Minus |
3L | 28103327 | 3L | 5144870..5145176 | 511..205 | 1535 | 100 | Minus |
3L | 28103327 | 3L | 5144515..5144804 | 801..512 | 1450 | 100 | Minus |
3L | 28103327 | 3L | 5145243..5145447 | 205..1 | 1025 | 100 | Minus |
3L | 28103327 | 3L | 5144279..5144448 | 969..800 | 850 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 5142396..5143670 | 970..2244 | 98 | <- | Minus |
chr3L | 5143726..5143893 | 802..969 | 99 | <- | Minus |
chr3L | 5143962..5144251 | 512..801 | 99 | <- | Minus |
chr3L | 5144317..5144623 | 205..511 | 97 | <- | Minus |
chr3L | 5144691..5144894 | 1..204 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Gen-RA | 1..2181 | 47..2227 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Gen-RA | 1..2181 | 47..2227 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Gen-RA | 1..2181 | 47..2227 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Gen-RA | 1..2181 | 47..2227 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Gen-RA | 1..2181 | 47..2227 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Gen-RA | 1..2243 | 1..2244 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Gen-RA | 1..2243 | 1..2244 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Gen-RA | 30..2272 | 1..2244 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Gen-RA | 1..2243 | 1..2244 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Gen-RA | 30..2272 | 1..2244 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 5149849..5151123 | 970..2244 | 99 | <- | Minus |
3L | 5151179..5151346 | 802..969 | 100 | <- | Minus |
3L | 5151415..5151704 | 512..801 | 100 | <- | Minus |
3L | 5151770..5152076 | 205..511 | 100 | <- | Minus |
3L | 5152144..5152347 | 1..204 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 5149849..5151123 | 970..2244 | 99 | <- | Minus |
3L | 5151179..5151346 | 802..969 | 100 | <- | Minus |
3L | 5151415..5151704 | 512..801 | 100 | <- | Minus |
3L | 5151770..5152076 | 205..511 | 100 | <- | Minus |
3L | 5152144..5152347 | 1..204 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 5149849..5151123 | 970..2244 | 99 | <- | Minus |
3L | 5151179..5151346 | 802..969 | 100 | <- | Minus |
3L | 5151415..5151704 | 512..801 | 100 | <- | Minus |
3L | 5151770..5152076 | 205..511 | 100 | <- | Minus |
3L | 5152144..5152347 | 1..204 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 5142949..5144223 | 970..2244 | 99 | <- | Minus |
arm_3L | 5144279..5144446 | 802..969 | 100 | <- | Minus |
arm_3L | 5144515..5144804 | 512..801 | 100 | <- | Minus |
arm_3L | 5144870..5145176 | 205..511 | 100 | <- | Minus |
arm_3L | 5145244..5145447 | 1..204 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 5142949..5144223 | 970..2244 | 99 | <- | Minus |
3L | 5144279..5144446 | 802..969 | 100 | <- | Minus |
3L | 5144515..5144804 | 512..801 | 100 | <- | Minus |
3L | 5144870..5145176 | 205..511 | 100 | <- | Minus |
3L | 5145244..5145447 | 1..204 | 100 | Minus |
Translation from 46 to 2226
> RE33588.pep MGVKELWGVLTPHCERKPINELRGKKVAIDLAGWVCESLNVVDYFVHPRH HLKNLFFRTCYLIWEQVTPVFVLEGVAPKLKSQVIAKRNELQFRGVKPKN SPECTQSQPSKGDKGRSRFNHVLKQCETLLLSMGIQCVQGPGEAEAYCAF LNKHGLVDGVISQDSDCFAYGAVRVYRNFSVSTQGAQAAAGGAVDIYDMR EITSRMDFGQQKIIVMALLCGCDYCPDGIGGIGKDGVLKLFNKYKETEIL DRMRSWRGETDKYNALEIRVDDKSICSNCGHIGKTQSHTKSGCSVCRTHK GCDESLWKEQRLSIKSELTLRRKALLSPDFPNEEIIAEFLSEPDTIPNLN LNWRQPNLVKFIKQIGHLLQWPEIYCFQKFFPILTRWQVQQSKQEKILIQ PHEIIKKRTVKGVPSLELRWHDPSGIFKGLIPDKQIAEYEAEHPKGIEEL YYTIEPLDMLETAYPDLVAAFLKSKEKPAKKTTRKKKTASEEENKENEPN SKPKRVVRKIKAQPEENQPLLHQFLGRKKEGTPVKAPAPQRQQCSTPITK FLPSDLESDCDAEEFDMSDIVKGIISNPNAKPALTNHDGHQLHYEPMAED LSLRLAQMSLGNVNESPKVETKRDLSQVDQLPQSKRFSLEDSFDLLVKGD LQKLARTPVERFKMQHRISEKIPTPVKPLDNISYFFNQSSDNADVFEELM NSSLVPQDQEDNAEDEEEDDLVVISD*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF10471-PA | 734 | GF10471-PA | 1..734 | 1..726 | 3121 | 84.2 | Plus |
Dana\GF13444-PA | 388 | GF13444-PA | 4..272 | 1..267 | 263 | 29 | Plus |
Dana\GF15526-PA | 1237 | GF15526-PA | 791..972 | 53..244 | 179 | 30.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG14140-PA | 726 | GG14140-PA | 1..726 | 1..726 | 3313 | 92.3 | Plus |
Dere\GG22240-PA | 387 | GG22240-PA | 4..265 | 1..255 | 266 | 29.6 | Plus |
Dere\GG10553-PA | 1237 | GG10553-PA | 806..973 | 67..244 | 178 | 30.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH15274-PA | 749 | GH15274-PA | 1..747 | 1..726 | 2715 | 73.3 | Plus |
Dgri\GH21157-PA | 388 | GH21157-PA | 4..268 | 1..263 | 247 | 27.7 | Plus |
Dgri\GH10954-PA | 1183 | GH10954-PA | 732..909 | 65..249 | 178 | 29.1 | Plus |
Dgri\GH10168-PA | 631 | GH10168-PA | 1..274 | 1..275 | 167 | 24.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Gen-PA | 726 | CG10670-PA | 1..726 | 1..726 | 3839 | 100 | Plus |
Fen1-PA | 385 | CG8648-PA | 4..265 | 1..255 | 250 | 29.7 | Plus |
mus201-PD | 1236 | CG10890-PD | 805..972 | 67..244 | 165 | 29.6 | Plus |
mus201-PC | 1236 | CG10890-PC | 805..972 | 67..244 | 165 | 29.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI11983-PA | 751 | GI11983-PA | 1..749 | 1..726 | 2655 | 70.2 | Plus |
Dmoj\GI18754-PA | 388 | GI18754-PA | 4..259 | 1..250 | 242 | 28 | Plus |
Dmoj\GI10377-PA | 1255 | GI10377-PA | 813..980 | 67..244 | 196 | 31.8 | Plus |
Dmoj\GI14203-PA | 661 | GI14203-PA | 1..274 | 1..275 | 161 | 23.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL22468-PA | 754 | GL22468-PA | 1..754 | 1..726 | 2876 | 78.3 | Plus |
Dper\GL16728-PA | 386 | GL16728-PA | 4..272 | 1..267 | 258 | 28.7 | Plus |
Dper\GL25951-PA | 1238 | GL25951-PA | 807..977 | 67..247 | 177 | 30.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA10481-PA | 754 | GA10481-PA | 1..754 | 1..726 | 2871 | 77.3 | Plus |
Dpse\GA27689-PA | 386 | GA27689-PA | 4..272 | 1..267 | 258 | 28.7 | Plus |
Dpse\GA25201-PA | 1236 | GA25201-PA | 805..975 | 67..247 | 177 | 30.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM13928-PA | 726 | GM13928-PA | 1..726 | 1..726 | 3783 | 97.2 | Plus |
Dsec\GM20026-PA | 385 | GM20026-PA | 4..265 | 1..255 | 263 | 29.6 | Plus |
Dsec\GM16947-PA | 1108 | GM16947-PA | 663..844 | 53..244 | 185 | 30.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD13208-PA | 726 | GD13208-PA | 1..726 | 1..726 | 3802 | 97.7 | Plus |
Dsim\GD25512-PA | 385 | GD25512-PA | 4..265 | 1..255 | 262 | 29.6 | Plus |
Dsim\GD23543-PA | 1235 | GD23543-PA | 790..971 | 53..244 | 186 | 30.1 | Plus |
Dsim\GD20054-PA | 259 | GD20054-PA | 13..123 | 126..245 | 149 | 34.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ12207-PA | 747 | GJ12207-PA | 1..745 | 1..726 | 2658 | 71.8 | Plus |
Dvir\GJ21778-PA | 386 | GJ21778-PA | 4..259 | 1..250 | 250 | 27.6 | Plus |
Dvir\GJ18024-PA | 1238 | GJ18024-PA | 825..987 | 72..244 | 190 | 30.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK20322-PA | 722 | GK20322-PA | 1..693 | 1..704 | 2592 | 73.5 | Plus |
Dwil\GK21315-PA | 388 | GK21315-PA | 4..272 | 1..267 | 267 | 29.4 | Plus |
Dwil\GK18419-PA | 1247 | GK18419-PA | 811..1010 | 62..256 | 187 | 28.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE20569-PA | 727 | GE20569-PA | 1..727 | 1..726 | 3402 | 94.6 | Plus |
Dyak\GE14031-PA | 387 | GE14031-PA | 4..265 | 1..255 | 266 | 29.6 | Plus |
Dyak\GE18773-PA | 1237 | GE18773-PA | 806..973 | 67..244 | 177 | 30.7 | Plus |
Translation from 46 to 2226
> RE33588.hyp MGVKELWGVLTPHCERKPINELRGKKVAIDLAGWVCESLNVVDYFVHPRH HLKNLFFRTCYLIWEQVTPVFVLEGVAPKLKSQVIAKRNELQFRGVKPKN SPECTQSQPSKGDKGRSRFNHVLKQCETLLLSMGIQCVQGPGEAEAYCAF LNKHGLVDGVISQDSDCFAYGAVRVYRNFSVSTQGAQAAAGGAVDIYDMR EITSRMDFGQQKIIVMALLCGCDYCPDGIGGIGKDGVLKLFNKYKETEIL DRMRSWRGETDKYNALEIRVDDKSICSNCGHIGKTQSHTKSGCSVCRTHK GCDESLWKEQRLSIKSELTLRRKALLSPDFPNEEIIAEFLSEPDTIPNLN LNWRQPNLVKFIKQIGHLLQWPEIYCFQKFFPILTRWQVQQSKQEKILIQ PHEIIKKRTVKGVPSLELRWHDPSGIFKGLIPDKQIAEYEAEHPKGIEEL YYTIEPLDMLETAYPDLVAAFLKSKEKPAKKTTRKKKTASEEENKENEPN SKPKRVVRKIKAQPEENQPLLHQFLGRKKEGTPVKAPAPQRQQCSTPITK FLPSDLESDCDAEEFDMSDIVKGIISNPNAKPALTNHDGHQLHYEPMAED LSLRLAQMSLGNVNESPKVETKRDLSQVDQLPQSKRFSLEDSFDLLVKGD LQKLARTPVERFKMQHRISEKIPTPVKPLDNISYFFNQSSDNADVFEELM NSSLVPQDQEDNAEDEEEDDLVVISD*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Gen-PA | 726 | CG10670-PA | 1..726 | 1..726 | 3839 | 100 | Plus |
Fen1-PA | 385 | CG8648-PA | 4..265 | 1..255 | 250 | 29.7 | Plus |
mus201-PD | 1236 | CG10890-PD | 805..972 | 67..244 | 165 | 29.6 | Plus |
mus201-PC | 1236 | CG10890-PC | 805..972 | 67..244 | 165 | 29.6 | Plus |