Clone RE33588 Report

Search the DGRC for RE33588

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:335
Well:88
Vector:pFlc-1
Associated Gene/TranscriptGen-RA
Protein status:RE33588.pep: gold
Preliminary Size:2181
Sequenced Size:2261

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10670 2002-01-01 Sim4 clustering to Release 2
CG10670 2002-06-26 Blastp of sequenced clone
CG10670 2003-01-01 Sim4 clustering to Release 3
Gen 2008-04-29 Release 5.5 accounting
Gen 2008-08-15 Release 5.9 accounting
Gen 2008-12-18 5.12 accounting

Clone Sequence Records

RE33588.complete Sequence

2261 bp (2261 high quality bases) assembled on 2002-06-26

GenBank Submission: AY128475

> RE33588.complete
AAATTTGTTGCGAATTTCTCGCGGGGTTTTTGTTTAGCTTATTTAAATGG
GCGTCAAGGAATTATGGGGTGTTTTAACGCCCCATTGTGAACGTAAACCC
ATTAATGAACTGCGGGGAAAGAAAGTGGCCATCGACCTGGCCGGCTGGGT
GTGCGAATCTCTTAATGTTGTGGACTACTTTGTGCATCCAAGGCATCATT
TAAAGAACCTCTTCTTTCGCACTTGCTACTTGATTTGGGAGCAAGTTACT
CCGGTTTTCGTTTTGGAGGGAGTTGCTCCAAAACTCAAGAGCCAGGTGAT
AGCCAAAAGGAATGAGCTCCAGTTTCGGGGAGTGAAGCCCAAGAATTCGC
CTGAGTGCACCCAAAGTCAGCCGTCCAAGGGCGACAAGGGACGCAGCCGG
TTCAACCATGTTCTCAAGCAGTGCGAAACGCTGCTGCTCTCCATGGGAAT
CCAGTGCGTCCAAGGTCCCGGCGAGGCGGAGGCCTACTGTGCCTTTCTCA
ACAAGCATGGCCTAGTGGACGGCGTCATTAGCCAGGACTCGGATTGCTTT
GCCTATGGAGCCGTTCGTGTCTATCGCAACTTCTCCGTTTCCACCCAAGG
AGCCCAGGCAGCCGCCGGCGGAGCTGTGGACATCTACGACATGCGGGAGA
TCACATCCCGAATGGACTTTGGCCAACAGAAGATCATTGTGATGGCTTTG
CTCTGCGGCTGTGATTATTGTCCTGATGGCATAGGTGGCATTGGCAAGGA
TGGCGTCCTAAAGCTGTTCAACAAGTACAAGGAGACTGAGATTTTGGATA
GAATGAGAAGCTGGCGTGGTGAAACCGATAAATACAATGCCTTGGAGATC
CGAGTGGACGACAAATCCATCTGCAGCAATTGTGGCCACATTGGCAAGAC
CCAGAGCCACACAAAAAGTGGCTGCAGTGTGTGTCGCACACACAAAGGCT
GCGATGAGAGTCTCTGGAAAGAACAACGACTATCCATTAAGTCCGAGTTG
ACTTTGAGGCGGAAAGCCCTATTATCTCCTGACTTTCCCAACGAAGAGAT
CATTGCCGAGTTTCTCAGCGAACCCGACACCATTCCCAATCTAAATCTCA
ACTGGCGGCAACCAAATCTTGTCAAATTCATCAAACAAATCGGACATCTC
TTGCAGTGGCCAGAAATATACTGCTTCCAAAAGTTCTTTCCCATACTCAC
ACGCTGGCAGGTGCAGCAATCGAAGCAGGAGAAGATACTTATCCAGCCAC
ACGAGATTATCAAAAAGCGAACTGTGAAGGGTGTGCCCAGCTTAGAATTG
CGCTGGCACGATCCCAGTGGCATCTTCAAGGGTCTTATTCCGGACAAGCA
GATTGCGGAGTACGAAGCGGAGCATCCCAAGGGAATCGAGGAACTTTACT
ACACCATTGAGCCATTGGACATGCTGGAGACAGCGTATCCCGATTTAGTA
GCGGCCTTTTTGAAGTCGAAGGAGAAGCCCGCCAAGAAAACCACGCGAAA
GAAGAAAACCGCATCTGAAGAGGAGAATAAGGAAAACGAGCCGAATTCGA
AACCAAAGCGAGTGGTCAGAAAGATAAAGGCTCAGCCTGAAGAGAACCAG
CCATTACTGCACCAATTCCTAGGGCGCAAGAAGGAAGGTACTCCGGTCAA
GGCTCCCGCTCCGCAACGTCAGCAATGCTCCACCCCCATCACCAAGTTCC
TGCCCTCCGATCTGGAAAGCGATTGCGATGCCGAAGAGTTCGATATGTCG
GACATAGTTAAAGGCATTATCTCGAATCCGAATGCCAAGCCAGCACTGAC
CAACCACGATGGTCACCAGCTTCATTACGAACCCATGGCGGAAGATTTGA
GCTTACGTCTGGCGCAGATGAGTCTAGGAAATGTGAATGAATCGCCCAAA
GTGGAAACGAAAAGAGATCTCTCTCAAGTGGATCAACTACCGCAGAGTAA
GCGATTCTCCTTGGAGGACAGTTTTGATCTGCTGGTCAAGGGAGATCTGC
AGAAGCTGGCCAGGACGCCAGTGGAGCGATTCAAGATGCAGCATCGCATC
AGCGAAAAGATTCCAACGCCAGTGAAGCCCTTGGATAACATAAGTTACTT
CTTCAATCAAAGTTCCGATAATGCGGATGTCTTTGAAGAGTTGATGAACT
CCAGCTTGGTGCCCCAGGATCAAGAGGATAACGCAGAAGATGAGGAGGAG
GATGACCTGGTAGTGATTAGTGATTAAAGATTCTGAAATTCCCTAAAAAA
AAAAAAAAAAA

RE33588.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:44:45
Subject Length Description Subject Range Query Range Score Percent Strand
Gen-RA 2277 Gen-RA 30..2277 1..2248 11225 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 13:05:08
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 5142398..5143670 2242..970 6185 99.1 Minus
chr3L 24539361 chr3L 5143962..5144251 801..512 1435 99.7 Minus
chr3L 24539361 chr3L 5144317..5144623 511..205 1430 97.7 Minus
chr3L 24539361 chr3L 5144690..5144894 205..1 980 98.5 Minus
chr3L 24539361 chr3L 5143726..5143895 969..800 835 99.4 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:50:24 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 13:05:07
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5149845..5151123 2248..970 6380 99.9 Minus
3L 28110227 3L 5151770..5152076 511..205 1535 100 Minus
3L 28110227 3L 5151415..5151704 801..512 1450 100 Minus
3L 28110227 3L 5152143..5152347 205..1 1025 100 Minus
3L 28110227 3L 5151179..5151348 969..800 850 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:17:51
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 5142945..5144223 2248..970 6380 99.9 Minus
3L 28103327 3L 5144870..5145176 511..205 1535 100 Minus
3L 28103327 3L 5144515..5144804 801..512 1450 100 Minus
3L 28103327 3L 5145243..5145447 205..1 1025 100 Minus
3L 28103327 3L 5144279..5144448 969..800 850 100 Minus
Blast to na_te.dros performed on 2019-03-16 13:05:07 has no hits.

RE33588.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 13:06:02 Download gff for RE33588.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 5142396..5143670 970..2244 98 <- Minus
chr3L 5143726..5143893 802..969 99 <- Minus
chr3L 5143962..5144251 512..801 99 <- Minus
chr3L 5144317..5144623 205..511 97 <- Minus
chr3L 5144691..5144894 1..204 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:10:27 Download gff for RE33588.complete
Subject Subject Range Query Range Percent Splice Strand
Gen-RA 1..2181 47..2227 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:18:41 Download gff for RE33588.complete
Subject Subject Range Query Range Percent Splice Strand
Gen-RA 1..2181 47..2227 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 11:49:47 Download gff for RE33588.complete
Subject Subject Range Query Range Percent Splice Strand
Gen-RA 1..2181 47..2227 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:09:48 Download gff for RE33588.complete
Subject Subject Range Query Range Percent Splice Strand
Gen-RA 1..2181 47..2227 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:09:12 Download gff for RE33588.complete
Subject Subject Range Query Range Percent Splice Strand
Gen-RA 1..2181 47..2227 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:43:37 Download gff for RE33588.complete
Subject Subject Range Query Range Percent Splice Strand
Gen-RA 1..2243 1..2244 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:18:41 Download gff for RE33588.complete
Subject Subject Range Query Range Percent Splice Strand
Gen-RA 1..2243 1..2244 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:49:47 Download gff for RE33588.complete
Subject Subject Range Query Range Percent Splice Strand
Gen-RA 30..2272 1..2244 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:09:49 Download gff for RE33588.complete
Subject Subject Range Query Range Percent Splice Strand
Gen-RA 1..2243 1..2244 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:09:12 Download gff for RE33588.complete
Subject Subject Range Query Range Percent Splice Strand
Gen-RA 30..2272 1..2244 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:06:02 Download gff for RE33588.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5149849..5151123 970..2244 99 <- Minus
3L 5151179..5151346 802..969 100 <- Minus
3L 5151415..5151704 512..801 100 <- Minus
3L 5151770..5152076 205..511 100 <- Minus
3L 5152144..5152347 1..204 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:06:02 Download gff for RE33588.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5149849..5151123 970..2244 99 <- Minus
3L 5151179..5151346 802..969 100 <- Minus
3L 5151415..5151704 512..801 100 <- Minus
3L 5151770..5152076 205..511 100 <- Minus
3L 5152144..5152347 1..204 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:06:02 Download gff for RE33588.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5149849..5151123 970..2244 99 <- Minus
3L 5151179..5151346 802..969 100 <- Minus
3L 5151415..5151704 512..801 100 <- Minus
3L 5151770..5152076 205..511 100 <- Minus
3L 5152144..5152347 1..204 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:49:47 Download gff for RE33588.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5142949..5144223 970..2244 99 <- Minus
arm_3L 5144279..5144446 802..969 100 <- Minus
arm_3L 5144515..5144804 512..801 100 <- Minus
arm_3L 5144870..5145176 205..511 100 <- Minus
arm_3L 5145244..5145447 1..204 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:41:55 Download gff for RE33588.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5142949..5144223 970..2244 99 <- Minus
3L 5144279..5144446 802..969 100 <- Minus
3L 5144515..5144804 512..801 100 <- Minus
3L 5144870..5145176 205..511 100 <- Minus
3L 5145244..5145447 1..204 100   Minus

RE33588.pep Sequence

Translation from 46 to 2226

> RE33588.pep
MGVKELWGVLTPHCERKPINELRGKKVAIDLAGWVCESLNVVDYFVHPRH
HLKNLFFRTCYLIWEQVTPVFVLEGVAPKLKSQVIAKRNELQFRGVKPKN
SPECTQSQPSKGDKGRSRFNHVLKQCETLLLSMGIQCVQGPGEAEAYCAF
LNKHGLVDGVISQDSDCFAYGAVRVYRNFSVSTQGAQAAAGGAVDIYDMR
EITSRMDFGQQKIIVMALLCGCDYCPDGIGGIGKDGVLKLFNKYKETEIL
DRMRSWRGETDKYNALEIRVDDKSICSNCGHIGKTQSHTKSGCSVCRTHK
GCDESLWKEQRLSIKSELTLRRKALLSPDFPNEEIIAEFLSEPDTIPNLN
LNWRQPNLVKFIKQIGHLLQWPEIYCFQKFFPILTRWQVQQSKQEKILIQ
PHEIIKKRTVKGVPSLELRWHDPSGIFKGLIPDKQIAEYEAEHPKGIEEL
YYTIEPLDMLETAYPDLVAAFLKSKEKPAKKTTRKKKTASEEENKENEPN
SKPKRVVRKIKAQPEENQPLLHQFLGRKKEGTPVKAPAPQRQQCSTPITK
FLPSDLESDCDAEEFDMSDIVKGIISNPNAKPALTNHDGHQLHYEPMAED
LSLRLAQMSLGNVNESPKVETKRDLSQVDQLPQSKRFSLEDSFDLLVKGD
LQKLARTPVERFKMQHRISEKIPTPVKPLDNISYFFNQSSDNADVFEELM
NSSLVPQDQEDNAEDEEEDDLVVISD*

RE33588.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 04:55:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10471-PA 734 GF10471-PA 1..734 1..726 3121 84.2 Plus
Dana\GF13444-PA 388 GF13444-PA 4..272 1..267 263 29 Plus
Dana\GF15526-PA 1237 GF15526-PA 791..972 53..244 179 30.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 04:55:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14140-PA 726 GG14140-PA 1..726 1..726 3313 92.3 Plus
Dere\GG22240-PA 387 GG22240-PA 4..265 1..255 266 29.6 Plus
Dere\GG10553-PA 1237 GG10553-PA 806..973 67..244 178 30.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 04:55:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15274-PA 749 GH15274-PA 1..747 1..726 2715 73.3 Plus
Dgri\GH21157-PA 388 GH21157-PA 4..268 1..263 247 27.7 Plus
Dgri\GH10954-PA 1183 GH10954-PA 732..909 65..249 178 29.1 Plus
Dgri\GH10168-PA 631 GH10168-PA 1..274 1..275 167 24.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:17:55
Subject Length Description Subject Range Query Range Score Percent Strand
Gen-PA 726 CG10670-PA 1..726 1..726 3839 100 Plus
Fen1-PA 385 CG8648-PA 4..265 1..255 250 29.7 Plus
mus201-PD 1236 CG10890-PD 805..972 67..244 165 29.6 Plus
mus201-PC 1236 CG10890-PC 805..972 67..244 165 29.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 04:55:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11983-PA 751 GI11983-PA 1..749 1..726 2655 70.2 Plus
Dmoj\GI18754-PA 388 GI18754-PA 4..259 1..250 242 28 Plus
Dmoj\GI10377-PA 1255 GI10377-PA 813..980 67..244 196 31.8 Plus
Dmoj\GI14203-PA 661 GI14203-PA 1..274 1..275 161 23.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 04:55:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22468-PA 754 GL22468-PA 1..754 1..726 2876 78.3 Plus
Dper\GL16728-PA 386 GL16728-PA 4..272 1..267 258 28.7 Plus
Dper\GL25951-PA 1238 GL25951-PA 807..977 67..247 177 30.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 04:55:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10481-PA 754 GA10481-PA 1..754 1..726 2871 77.3 Plus
Dpse\GA27689-PA 386 GA27689-PA 4..272 1..267 258 28.7 Plus
Dpse\GA25201-PA 1236 GA25201-PA 805..975 67..247 177 30.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 04:55:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13928-PA 726 GM13928-PA 1..726 1..726 3783 97.2 Plus
Dsec\GM20026-PA 385 GM20026-PA 4..265 1..255 263 29.6 Plus
Dsec\GM16947-PA 1108 GM16947-PA 663..844 53..244 185 30.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 04:55:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13208-PA 726 GD13208-PA 1..726 1..726 3802 97.7 Plus
Dsim\GD25512-PA 385 GD25512-PA 4..265 1..255 262 29.6 Plus
Dsim\GD23543-PA 1235 GD23543-PA 790..971 53..244 186 30.1 Plus
Dsim\GD20054-PA 259 GD20054-PA 13..123 126..245 149 34.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 04:55:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12207-PA 747 GJ12207-PA 1..745 1..726 2658 71.8 Plus
Dvir\GJ21778-PA 386 GJ21778-PA 4..259 1..250 250 27.6 Plus
Dvir\GJ18024-PA 1238 GJ18024-PA 825..987 72..244 190 30.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 04:55:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20322-PA 722 GK20322-PA 1..693 1..704 2592 73.5 Plus
Dwil\GK21315-PA 388 GK21315-PA 4..272 1..267 267 29.4 Plus
Dwil\GK18419-PA 1247 GK18419-PA 811..1010 62..256 187 28.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 04:55:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20569-PA 727 GE20569-PA 1..727 1..726 3402 94.6 Plus
Dyak\GE14031-PA 387 GE14031-PA 4..265 1..255 266 29.6 Plus
Dyak\GE18773-PA 1237 GE18773-PA 806..973 67..244 177 30.7 Plus

RE33588.hyp Sequence

Translation from 46 to 2226

> RE33588.hyp
MGVKELWGVLTPHCERKPINELRGKKVAIDLAGWVCESLNVVDYFVHPRH
HLKNLFFRTCYLIWEQVTPVFVLEGVAPKLKSQVIAKRNELQFRGVKPKN
SPECTQSQPSKGDKGRSRFNHVLKQCETLLLSMGIQCVQGPGEAEAYCAF
LNKHGLVDGVISQDSDCFAYGAVRVYRNFSVSTQGAQAAAGGAVDIYDMR
EITSRMDFGQQKIIVMALLCGCDYCPDGIGGIGKDGVLKLFNKYKETEIL
DRMRSWRGETDKYNALEIRVDDKSICSNCGHIGKTQSHTKSGCSVCRTHK
GCDESLWKEQRLSIKSELTLRRKALLSPDFPNEEIIAEFLSEPDTIPNLN
LNWRQPNLVKFIKQIGHLLQWPEIYCFQKFFPILTRWQVQQSKQEKILIQ
PHEIIKKRTVKGVPSLELRWHDPSGIFKGLIPDKQIAEYEAEHPKGIEEL
YYTIEPLDMLETAYPDLVAAFLKSKEKPAKKTTRKKKTASEEENKENEPN
SKPKRVVRKIKAQPEENQPLLHQFLGRKKEGTPVKAPAPQRQQCSTPITK
FLPSDLESDCDAEEFDMSDIVKGIISNPNAKPALTNHDGHQLHYEPMAED
LSLRLAQMSLGNVNESPKVETKRDLSQVDQLPQSKRFSLEDSFDLLVKGD
LQKLARTPVERFKMQHRISEKIPTPVKPLDNISYFFNQSSDNADVFEELM
NSSLVPQDQEDNAEDEEEDDLVVISD*

RE33588.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:24:55
Subject Length Description Subject Range Query Range Score Percent Strand
Gen-PA 726 CG10670-PA 1..726 1..726 3839 100 Plus
Fen1-PA 385 CG8648-PA 4..265 1..255 250 29.7 Plus
mus201-PD 1236 CG10890-PD 805..972 67..244 165 29.6 Plus
mus201-PC 1236 CG10890-PC 805..972 67..244 165 29.6 Plus