Clone RE33762 Report

Search the DGRC for RE33762

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:337
Well:62
Vector:pFlc-1
Associated Gene/TranscriptCG10086-RA
Protein status:RE33762.pep: gold
Preliminary Size:1410
Sequenced Size:1872

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10086 2001-12-14 Blastp of sequenced clone
CG10086 2002-01-01 Sim4 clustering to Release 2
CG10086 2003-01-01 Sim4 clustering to Release 3
CG10086 2008-04-29 Release 5.5 accounting
CG10086 2008-08-15 Release 5.9 accounting
CG10086 2008-12-18 5.12 accounting

Clone Sequence Records

RE33762.complete Sequence

1872 bp (1872 high quality bases) assembled on 2001-12-14

GenBank Submission: AY071310

> RE33762.complete
AGTTCGTGTTTAGCAGCGGGCGCGTTAGGATCGCTCGCAAATCTAAAAGC
TCTGGAGAGGCATAAGCCCATTACCTATTCGCCAACATGTCGAAGAACTG
CATGATAACGTTCGACCAGAATGAGCACGGCACCTACTTCACCGGCCAGG
TGATAACCGGCAAGGTGATTGTCAATCTGAACAAGACCAAGAAACTGCGA
GGAATAAAACTGCAAATAAGTGGCTATGCGCAAGCCCAGTGGCGCATCCG
CAGACATGGTAAGGCGGTGGCAATCCAAAACCCCAAGAAGCGATCAAAGC
ACCAGTACAGCGGGCGGGAGGACTATATAGCCTCCACCACTTACCTCATG
GGTTCCGAGCAGGGCAGCAACTTTAACATGGACGCCGGCACGTACACCTA
CACTTTTGCTTGCCCCATTCCCAGCCACTGCCCCTCGTCCTTCGAGGGTG
CCTATGGACACATCCGGTATCTGGCCAAGGTCACCTTTTTGAAGCCAGGA
GCTTCCAATCGCACCCACAACGTGGGCTTCACTGTGCTAAAGCTGCTGGA
CTTGAACCAGGAGACCAAGATGCTCCGGGAACCGGCGAGCAATGAAGCCG
TGGAACACTTTTGCCTGATGCACACGAAGCCCGTGCAGTTGAAGGTCACT
CTCCAGCAGCAGGGCTATGTTCCGGGTCAGTTCATGTTGATCCACGCCCA
TGTGCGTAATGACTCCAGCTCCGATTGTCGGAAGCTACTGATCATGCTGC
ATTTGAGAGCCACATACACGGCGGATACGCCCTCGCTACGCACCACATCC
GAGAAGATAATGCTGGTGAAGCGCGAGTGCGGTCCGGTGGCTCATAATGC
GCAGAGGACTTACACGGAAACCCTGAGGATTCCGGCAACGGCGCCCACCT
GCGAGCACCTAAGCAAGGTGGTGCGCGTATCTTACGAAGTGCGTGTGGTG
GCTGTTATGAACTGGCTTATGGCTAATCCCCGGCTCATAATCCCTGTGAC
TATTGGCAACGTGCCCCTGGCAACTGCGGTGTCCGGACCGGACTTCCTGC
CAACTAACGCCTTCCCATCTGGAAGTTCGCTGCCTGCCGACTTGCCATGC
ACCTCTACAAGGGCCATGGAACTGGCTCAGATGGCCGCAAGCGGGGTCAG
CAACTCCGGCTACGAGATGGCCGAGGATCTAGAGGACTTCGAGCTTCCAG
AGGATGGAGATGATGAGTTGGAGGCTGCCGACGATTTCGTACCAGATTTA
CCTCCTCCTACCTACGAGCAGGCCATGTTCATGACCACTGATATTGCGGA
CACGGACGCGAACACGGTCAGCGAGGCCTCCCGATTTACTCCACGCTATC
CGGTCTTCGATGTGGACACCTTCCAGAGCCCGCCGCCAAATCCTCCCCAG
AAGAAAAGGCGCCGCCGACGCAGACGTCCTGCCGATCCTGGACAGTCGAA
GCAACAACCGGAGAAACAACCAGTGGAGTCACCCGTGCAGATCTGAGGGC
AGTTATCGCGAAAAATCACGACTATATCTTATCTCGGCAGTATTTATTTC
TTTTACGGTTCGCCAGTGTACTTACCAAAATGTTTACTATATATGTATGT
ATATCGGAATGATAAACAACCCAGAATATAAAAGTGTCTACTGGGTGATA
CGCGATAAATTGCGACTATAGCCTAGACAACCAAGTCCATGAAGGCATTG
AACTACAAATTTATTTATTCATTTATAAATTAAATTGAGTGGAGGACTTC
TAGCTCAGTCCGTGAGTTTAAATACTTATGAGAGCTAGAAATTTTGATTT
ACGCATACATGCTCCCAATTTCTAATTCTATTGCTTGACAATTTCCATTA
AAATGCAAAAAAAAAAAAAAAA

RE33762.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:44:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG10086-RA 2020 CG10086-RA 149..2014 1..1866 9315 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 19:45:51
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 3617729..3618780 200..1251 5245 99.9 Plus
chr3R 27901430 chr3R 3618939..3619543 1252..1856 3025 100 Plus
chr3R 27901430 chr3R 3616701..3616902 1..202 1010 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:50:30 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 19:45:49
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7791669..7792720 200..1251 5245 99.9 Plus
3R 32079331 3R 7792879..7793493 1252..1866 3075 100 Plus
3R 32079331 3R 7790641..7790842 1..202 1010 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:11:14
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 7532500..7533551 200..1251 5245 99.9 Plus
3R 31820162 3R 7533710..7534324 1252..1866 3075 100 Plus
3R 31820162 3R 7531472..7531673 1..202 1010 100 Plus
Blast to na_te.dros performed 2019-03-15 19:45:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dmir\worf 4174 Dmir\worf WORF 4174bp Derived from AY144572. 4142..4171 1738..1709 114 86.7 Minus

RE33762.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 19:46:56 Download gff for RE33762.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 3616701..3616901 1..201 100 -> Plus
chr3R 3617731..3618780 202..1251 99 -> Plus
chr3R 3618939..3619543 1252..1856 95   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:10:34 Download gff for RE33762.complete
Subject Subject Range Query Range Percent Splice Strand
CG10086-RA 1..1410 87..1496 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:11:12 Download gff for RE33762.complete
Subject Subject Range Query Range Percent Splice Strand
CG10086-RA 1..1410 87..1496 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:57:09 Download gff for RE33762.complete
Subject Subject Range Query Range Percent Splice Strand
CG10086-RA 1..1410 87..1496 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:35:27 Download gff for RE33762.complete
Subject Subject Range Query Range Percent Splice Strand
CG10086-RA 1..1410 87..1496 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:23:23 Download gff for RE33762.complete
Subject Subject Range Query Range Percent Splice Strand
CG10086-RA 1..1410 87..1496 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:41:22 Download gff for RE33762.complete
Subject Subject Range Query Range Percent Splice Strand
CG10086-RA 1..1856 1..1856 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:11:12 Download gff for RE33762.complete
Subject Subject Range Query Range Percent Splice Strand
CG10086-RA 1..1856 1..1856 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:57:09 Download gff for RE33762.complete
Subject Subject Range Query Range Percent Splice Strand
CG10086-RA 9..1864 1..1856 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:35:27 Download gff for RE33762.complete
Subject Subject Range Query Range Percent Splice Strand
CG10086-RA 1..1856 1..1856 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:23:23 Download gff for RE33762.complete
Subject Subject Range Query Range Percent Splice Strand
CG10086-RA 9..1864 1..1856 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:46:56 Download gff for RE33762.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7790641..7790841 1..201 100 -> Plus
3R 7791671..7792720 202..1251 99 -> Plus
3R 7792879..7793483 1252..1856 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:46:56 Download gff for RE33762.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7790641..7790841 1..201 100 -> Plus
3R 7791671..7792720 202..1251 99 -> Plus
3R 7792879..7793483 1252..1856 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:46:56 Download gff for RE33762.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7790641..7790841 1..201 100 -> Plus
3R 7791671..7792720 202..1251 99 -> Plus
3R 7792879..7793483 1252..1856 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:57:09 Download gff for RE33762.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3616363..3616563 1..201 100 -> Plus
arm_3R 3617393..3618442 202..1251 99 -> Plus
arm_3R 3618601..3619205 1252..1856 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:12:42 Download gff for RE33762.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7532502..7533551 202..1251 99 -> Plus
3R 7533710..7534314 1252..1856 100   Plus
3R 7531472..7531672 1..201 100 -> Plus

RE33762.pep Sequence

Translation from 86 to 1495

> RE33762.pep
MSKNCMITFDQNEHGTYFTGQVITGKVIVNLNKTKKLRGIKLQISGYAQA
QWRIRRHGKAVAIQNPKKRSKHQYSGREDYIASTTYLMGSEQGSNFNMDA
GTYTYTFACPIPSHCPSSFEGAYGHIRYLAKVTFLKPGASNRTHNVGFTV
LKLLDLNQETKMLREPASNEAVEHFCLMHTKPVQLKVTLQQQGYVPGQFM
LIHAHVRNDSSSDCRKLLIMLHLRATYTADTPSLRTTSEKIMLVKRECGP
VAHNAQRTYTETLRIPATAPTCEHLSKVVRVSYEVRVVAVMNWLMANPRL
IIPVTIGNVPLATAVSGPDFLPTNAFPSGSSLPADLPCTSTRAMELAQMA
ASGVSNSGYEMAEDLEDFELPEDGDDELEAADDFVPDLPPPTYEQAMFMT
TDIADTDANTVSEASRFTPRYPVFDVDTFQSPPPNPPQKKRRRRRRRPAD
PGQSKQQPEKQPVESPVQI*

RE33762.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:14:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17683-PA 477 GF17683-PA 1..477 1..469 2210 87.2 Plus
Dana\GF17285-PA 436 GF17285-PA 1..408 1..434 631 32.8 Plus
Dana\GF17286-PA 440 GF17286-PA 1..306 1..317 560 37.8 Plus
Dana\GF17283-PA 439 GF17283-PA 4..310 5..313 543 35 Plus
Dana\GF17284-PA 415 GF17284-PA 1..395 1..426 532 29.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:14:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14185-PA 469 GG14185-PA 1..469 1..469 2454 96.2 Plus
Dere\GG24984-PA 435 GG24984-PA 1..407 1..434 671 35.3 Plus
Dere\GG24962-PA 438 GG24962-PA 4..306 5..311 528 33.9 Plus
Dere\GG24973-PA 403 GG24973-PA 1..386 1..428 524 29.5 Plus
Dere\GG24995-PA 416 GG24995-PA 24..308 21..314 467 34.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:14:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18318-PA 461 GH18318-PA 1..461 1..469 1782 72.9 Plus
Dgri\GH19257-PA 430 GH19257-PA 1..408 1..432 637 34.3 Plus
Dgri\GH19258-PA 404 GH19258-PA 1..303 1..312 527 34.3 Plus
Dgri\GH19256-PA 433 GH19256-PA 1..306 1..311 502 33.9 Plus
Dgri\GH17389-PA 407 GH17389-PA 4..407 3..436 437 25.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:27:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG10086-PA 469 CG10086-PA 1..469 1..469 2465 100 Plus
CG18745-PA 433 CG18745-PA 1..405 1..434 659 33.9 Plus
CG18747-PB 418 CG18747-PB 1..399 1..392 541 31 Plus
CG18746-PA 438 CG18746-PA 4..306 5..311 521 33.9 Plus
CG18748-PC 409 CG18748-PC 5..392 5..428 517 28.3 Plus
CG1105-PA 422 CG1105-PA 4..419 3..433 448 26.8 Plus
CG2993-PA 511 CG2993-PA 1..312 1..321 377 27.5 Plus
CG2993-PB 524 CG2993-PB 1..312 1..321 377 27.5 Plus
CG2993-PC 545 CG2993-PC 1..312 1..321 377 27.5 Plus
CG18748-PB 359 CG18748-PB 42..342 98..428 373 28.1 Plus
Leash-PA 520 CG4674-PA 3..303 2..306 331 29.5 Plus
CG14696-PA 457 CG14696-PA 1..338 1..333 329 27.4 Plus
CG2641-PA 429 CG2641-PA 1..390 1..439 320 24.9 Plus
CG18744-PB 410 CG18744-PB 1..318 1..309 279 28.7 Plus
Vdup1-PE 342 CG7047-PE 9..298 6..310 240 25.8 Plus
Vdup1-PD 342 CG7047-PD 9..298 6..310 240 25.8 Plus
Vdup1-PA 342 CG7047-PA 9..298 6..310 240 25.8 Plus
Vdup1-PC 342 CG7047-PC 9..298 6..310 240 25.8 Plus
Vdup1-PB 342 CG7047-PB 9..298 6..310 240 25.8 Plus
CG3014-PC 488 CG3014-PC 1..297 1..311 213 21.9 Plus
CG3014-PA 488 CG3014-PA 1..297 1..311 213 21.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:14:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24129-PA 464 GI24129-PA 1..464 1..469 1761 73.5 Plus
Dmoj\GI23467-PA 430 GI23467-PA 1..419 1..435 656 35.2 Plus
Dmoj\GI23468-PA 405 GI23468-PA 1..392 1..437 553 31.7 Plus
Dmoj\GI23466-PA 427 GI23466-PA 1..305 1..311 521 36.4 Plus
Dmoj\GI23546-PA 409 GI23546-PA 4..405 3..432 449 27.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:14:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12155-PA 435 GL12155-PA 1..408 1..435 656 34.1 Plus
Dper\GL12153-PA 403 GL12153-PA 4..306 5..311 558 35.6 Plus
Dper\GL12154-PA 435 GL12154-PA 1..406 1..428 505 31.1 Plus
Dper\GL22035-PA 420 GL22035-PA 4..419 3..435 449 26.7 Plus
Dper\GL12456-PA 108 GL12456-PA 1..107 346..451 424 84.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:14:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10062-PA 466 GA10062-PA 1..466 1..469 2125 85.1 Plus
Dpse\GA15063-PA 435 GA15063-PA 1..408 1..435 662 34.4 Plus
Dpse\GA15064-PA 431 GA15064-PA 4..306 5..311 558 35.6 Plus
Dpse\GA15065-PA 407 GA15065-PA 1..390 1..435 550 33.6 Plus
Dpse\GA26206-PC 435 GA26206-PC 1..406 1..428 515 31.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:14:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10973-PA 469 GM10973-PA 1..469 1..469 2507 97.9 Plus
Dsec\GM10459-PA 435 GM10459-PA 1..407 1..434 667 35 Plus
Dsec\GM10457-PA 438 GM10457-PA 4..306 5..311 526 33.9 Plus
Dsec\GM10458-PA 406 GM10458-PA 1..387 1..426 522 28.8 Plus
Dsec\GM10460-PA 417 GM10460-PA 26..310 22..317 491 35.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:14:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19947-PA 469 GD19947-PA 1..469 1..469 2506 98.1 Plus
Dsim\GD19463-PA 435 GD19463-PA 1..407 1..434 668 35.3 Plus
Dsim\GD19461-PA 438 GD19461-PA 4..407 5..426 532 30.2 Plus
Dsim\GD19464-PA 417 GD19464-PA 26..310 22..317 476 35.1 Plus
Dsim\GD19457-PA 511 GD19457-PA 1..312 1..321 386 27.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:14:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10952-PA 464 GJ10952-PA 1..464 1..469 1903 74.3 Plus
Dvir\GJ10222-PA 426 GJ10222-PA 1..403 1..432 610 34.4 Plus
Dvir\GJ10221-PA 431 GJ10221-PA 1..305 1..311 538 36.7 Plus
Dvir\GJ10223-PA 406 GJ10223-PA 1..312 1..321 536 33.6 Plus
Dvir\GJ24027-PA 410 GJ24027-PA 4..410 3..436 415 25.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:14:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12019-PA 469 GK12019-PA 1..469 1..469 1961 77.8 Plus
Dwil\GK11060-PA 431 GK11060-PA 1..407 1..432 664 34.5 Plus
Dwil\GK11059-PA 430 GK11059-PA 5..400 5..428 576 30.6 Plus
Dwil\GK11061-PA 412 GK11061-PA 1..394 1..437 544 31.8 Plus
Dwil\GK10823-PA 425 GK10823-PA 4..421 3..432 453 27.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:14:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24941-PA 469 GE24941-PA 1..469 1..469 2489 97.4 Plus
Dyak\GE25773-PA 435 GE25773-PA 1..407 1..434 670 35.7 Plus
Dyak\GE25774-PA 413 GE25774-PA 1..386 1..389 555 33.5 Plus
Dyak\GE25771-PA 438 GE25771-PA 4..306 5..311 530 34.2 Plus
Dyak\GE25772-PA 388 GE25772-PA 1..371 22..428 488 29 Plus

RE33762.hyp Sequence

Translation from 86 to 1495

> RE33762.hyp
MSKNCMITFDQNEHGTYFTGQVITGKVIVNLNKTKKLRGIKLQISGYAQA
QWRIRRHGKAVAIQNPKKRSKHQYSGREDYIASTTYLMGSEQGSNFNMDA
GTYTYTFACPIPSHCPSSFEGAYGHIRYLAKVTFLKPGASNRTHNVGFTV
LKLLDLNQETKMLREPASNEAVEHFCLMHTKPVQLKVTLQQQGYVPGQFM
LIHAHVRNDSSSDCRKLLIMLHLRATYTADTPSLRTTSEKIMLVKRECGP
VAHNAQRTYTETLRIPATAPTCEHLSKVVRVSYEVRVVAVMNWLMANPRL
IIPVTIGNVPLATAVSGPDFLPTNAFPSGSSLPADLPCTSTRAMELAQMA
ASGVSNSGYEMAEDLEDFELPEDGDDELEAADDFVPDLPPPTYEQAMFMT
TDIADTDANTVSEASRFTPRYPVFDVDTFQSPPPNPPQKKRRRRRRRPAD
PGQSKQQPEKQPVESPVQI*

RE33762.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:15:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG10086-PA 469 CG10086-PA 1..469 1..469 2465 100 Plus
CG18745-PA 433 CG18745-PA 1..405 1..434 659 33.9 Plus
CG18747-PB 418 CG18747-PB 1..399 1..392 541 31 Plus
CG18746-PA 438 CG18746-PA 4..306 5..311 521 33.9 Plus
CG18748-PC 409 CG18748-PC 5..392 5..428 517 28.3 Plus