BDGP Sequence Production Resources |
Search the DGRC for RE33807
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 338 |
Well: | 7 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG3008-RA |
Protein status: | RE33807.pep: gold |
Sequenced Size: | 2275 |
Gene | Date | Evidence |
---|---|---|
CG3008 | 2001-12-17 | Blastp of sequenced clone |
CG3008 | 2002-01-01 | Sim4 clustering to Release 2 |
CG3008 | 2008-04-29 | Release 5.5 accounting |
CG3008 | 2008-08-15 | Release 5.9 accounting |
CG3008 | 2008-12-18 | 5.12 accounting |
2275 bp (2275 high quality bases) assembled on 2001-12-17
GenBank Submission: AY071312
> RE33807.complete GGTTCTGCGATAGCTCGATACTTTCATAAGCTGATAATTTCACAACAATT GGAAAAAGGATTGTTTGGAGAAATACAATAGAAATATTATTGCAACAAGG GTTGCAATTGGCTTCCCCTTATATTGGTCATCTATAGTGCCAAAACTGTC ACTTGTCCTCCACCGCGGACATATCAGAGTCCACCTGCAACCCGCCGTTG GTCAGGATTTGGACAGAGGCTTGTTTGTAAACTGCCACAATTACCACCGA TATAGAACTCGATCTTCTCAAGCCAAGTTCCAATAGAATGTCGTCGCCAT GGGTTAAGACCAGCGAGCCTGTGCAGCAGGTGAATCTGGCGGATATAATG TCGGAGCAATATGCCCACAAGTTGCACGACAAGGAGCTGCAGCGCCACAC GGAGAAGCTGAAAAGACCGGACGAACAGATAGCACCCGTTTGGGGGTCGC AAGCCTCATCCCCGCCAGCGCCCAATGCGCAGAGTATCCAAAGTGATGCG GAGGATTGGGAGGATTACTCTGCGCTCCTCAATGACGAAGGAAACGTAGC GGAGGACATTCAGCTGCCGGAAGACAGCGATGCAGTTATTGCCCAGCTGT TGCAGTCCCAGTTCGATCACGAGTACAATGAGGAATTGCGTCGTATCGAG CGGCAGCAAAACAAGCAATCCAAGGTCACTGTTACCCTCAATAAGTTCCT ACGTGATGGCGATGCAGAGTTCTTGCACGACACCGCGGAAGATGACTACG AAGAGGATGAATTGGAGCAACAGAAGCACGACTGGGATCGGTTCGAGGAC AATGAACGGCAGCTTGACTCCATACCTCGCTGCGGCTTTAAAGTTAACAA GGAGGGCGAGATGATAACAAAGCACGATCCGCAGCTGTGCGCCGTGCGTA ATGCCCAGCGCGTGATGTCCTTTCCGCCGGAGTTTCCCACCGGTGATGCT GCCGGTTTCGACATGAAGCTCTCCAATAAGGTGTTTAACCAACTACGAGC CCATTCTCGACGAGGCCGCTCCGACAAGCACGAGAAAGTGGCCACCGCGG AGATGGGATTGGATGCGGGTACACGTTTGCTGCTGTACAAGCTGATCAAT AACCAAATACTGGAGCAGATCAACGGCATTATATCCACGGGCAAGGAGGC GGTCATCTTGCACGCCAATTCCGATGCGAACTATACGGGCAGCAACGAGC ATGGTCACCAGAGTGGTGTGCTCGTTCCACCGCAGCTTTTGCCCCGGGAG TGTGCCATTAAAATCTTTAAAACCACGCTCAACGAGTTCAAGCAGCGCGA TAGATACATCAAGGATGACTATCGGTTCAAGGATCGCTTTAGCAAACAAA ACCACCGAGTGATTATCAATATGTGGGCCGAGAAGGAGATGCATAATCTG ATGAGGATGCAAGCCATTGGCCTAAACGTTCCAGACGTTGTTGTGCTGAA GAAGCACGTGCTGGTAATGCGGTTCATCGGTGACAATCATAACGCTGCGC CCAAGTTAAAGGATGCCCGTCTGAGCGACGCGGAGCTGAGTTGCGCCTAC GAAGAGATTGTGGCCGCGATGCACAAGTTGTACAATGAGGCGAAGCTGGT GCACGCCGATATGAGCGAATATAACATACTCTGGTTCGAGGGCAAGTGCT GGTTTATTGACGTGGCCCAGAGTGTCGAACCGAAGCATCCCAGTGCCCTG GAGTTCCTGATGAGGGATTGCGGCAACATTGTTAACTTCTTTGAACGACG CGGCCTGCCCAACATTTACACCAAGGAGCAGTTGTTCGAGTTTATTACGG GTCTCAATTCAGAGGTCCACACCGCCGCTCAGCTGGAGCAGATCCACACG CGTGGCGCTTCCATTAGCCAAGCCACTGCTCCGAATCAGGAGGAGTGCCC CGACGAACTGAAACCCTTGGAGTATCCCTTTGAGCTGGCCTGGGAAAAAT CACAACAAGATCGCGCTGCTCAAAAGGCTCTGCAGCAAGCGCAGGATAAT AACGATAACAAAACCGACACGGATAAGGATCAAGAGACCGATGACAATGA GAATGATAGTGACGACAAGGAAAAGATTAACAAAACTGCCAACCATTGAA ACTTCTAAAGTGTGGACTCATTTAGTTTAGTTTTAAATTGATATTAACAG TTTGGTCACAGAGATTCCATAGTAAAAGATATGATGCTTGTAGTCAAGTA ACTTGACTATAAAATATCCCTCGAAAAAAAGAATAAATTGTTTTGTTTTT CCACCCATGAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2L | 23010047 | chr2L | 4883504..4884784 | 979..2259 | 6270 | 99.3 | Plus |
chr2L | 23010047 | chr2L | 4882759..4883456 | 285..982 | 3460 | 99.7 | Plus |
chr2L | 23010047 | chr2L | 4882419..4882702 | 2..286 | 1255 | 96.8 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 4882418..4882702 | 1..286 | 96 | -> | Plus |
chr2L | 4882761..4883454 | 287..980 | 99 | -> | Plus |
chr2L | 4883506..4884784 | 981..2259 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3008-RA | 1..1812 | 288..2099 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3008-RA | 1..1812 | 288..2099 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3008-RA | 1..1812 | 288..2099 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3008-RA | 1..1812 | 288..2099 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3008-RA | 1..1812 | 288..2099 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3008-RA | 132..2390 | 1..2259 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3008-RA | 132..2390 | 1..2259 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3008-RA | 5..2263 | 1..2259 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3008-RA | 4..2262 | 1..2259 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3008-RA | 5..2263 | 1..2259 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 4883302..4883587 | 1..286 | 99 | -> | Plus |
2L | 4883646..4884339 | 287..980 | 100 | -> | Plus |
2L | 4884391..4885669 | 981..2259 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 4883302..4883587 | 1..286 | 99 | -> | Plus |
2L | 4883646..4884339 | 287..980 | 100 | -> | Plus |
2L | 4884391..4885669 | 981..2259 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 4883302..4883587 | 1..286 | 99 | -> | Plus |
2L | 4883646..4884339 | 287..980 | 100 | -> | Plus |
2L | 4884391..4885669 | 981..2259 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 4883302..4883587 | 1..286 | 99 | -> | Plus |
arm_2L | 4883646..4884339 | 287..980 | 100 | -> | Plus |
arm_2L | 4884391..4885669 | 981..2259 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 4883302..4883587 | 1..286 | 99 | -> | Plus |
2L | 4883646..4884339 | 287..980 | 100 | -> | Plus |
2L | 4884391..4885669 | 981..2259 | 100 | Plus |
Translation from 287 to 2098
> RE33807.hyp MSSPWVKTSEPVQQVNLADIMSEQYAHKLHDKELQRHTEKLKRPDEQIAP VWGSQASSPPAPNAQSIQSDAEDWEDYSALLNDEGNVAEDIQLPEDSDAV IAQLLQSQFDHEYNEELRRIERQQNKQSKVTVTLNKFLRDGDAEFLHDTA EDDYEEDELEQQKHDWDRFEDNERQLDSIPRCGFKVNKEGEMITKHDPQL CAVRNAQRVMSFPPEFPTGDAAGFDMKLSNKVFNQLRAHSRRGRSDKHEK VATAEMGLDAGTRLLLYKLINNQILEQINGIISTGKEAVILHANSDANYT GSNEHGHQSGVLVPPQLLPRECAIKIFKTTLNEFKQRDRYIKDDYRFKDR FSKQNHRVIINMWAEKEMHNLMRMQAIGLNVPDVVVLKKHVLVMRFIGDN HNAAPKLKDARLSDAELSCAYEEIVAAMHKLYNEAKLVHADMSEYNILWF EGKCWFIDVAQSVEPKHPSALEFLMRDCGNIVNFFERRGLPNIYTKEQLF EFITGLNSEVHTAAQLEQIHTRGASISQATAPNQEECPDELKPLEYPFEL AWEKSQQDRAAQKALQQAQDNNDNKTDTDKDQETDDNENDSDDKEKINKT ANH*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG3008-PA | 603 | CG3008-PA | 1..603 | 1..603 | 3176 | 100 | Plus |
RIOK1-PB | 585 | CG11660-PB | 66..538 | 148..602 | 575 | 31.9 | Plus |
RIOK1-PA | 585 | CG11660-PA | 66..538 | 148..602 | 575 | 31.9 | Plus |
Translation from 287 to 2098
> RE33807.pep MSSPWVKTSEPVQQVNLADIMSEQYAHKLHDKELQRHTEKLKRPDEQIAP VWGSQASSPPAPNAQSIQSDAEDWEDYSALLNDEGNVAEDIQLPEDSDAV IAQLLQSQFDHEYNEELRRIERQQNKQSKVTVTLNKFLRDGDAEFLHDTA EDDYEEDELEQQKHDWDRFEDNERQLDSIPRCGFKVNKEGEMITKHDPQL CAVRNAQRVMSFPPEFPTGDAAGFDMKLSNKVFNQLRAHSRRGRSDKHEK VATAEMGLDAGTRLLLYKLINNQILEQINGIISTGKEAVILHANSDANYT GSNEHGHQSGVLVPPQLLPRECAIKIFKTTLNEFKQRDRYIKDDYRFKDR FSKQNHRVIINMWAEKEMHNLMRMQAIGLNVPDVVVLKKHVLVMRFIGDN HNAAPKLKDARLSDAELSCAYEEIVAAMHKLYNEAKLVHADMSEYNILWF EGKCWFIDVAQSVEPKHPSALEFLMRDCGNIVNFFERRGLPNIYTKEQLF EFITGLNSEVHTAAQLEQIHTRGASISQATAPNQEECPDELKPLEYPFEL AWEKSQQDRAAQKALQQAQDNNDNKTDTDKDQETDDNENDSDDKEKINKT ANH*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF23540-PA | 612 | GF23540-PA | 1..610 | 1..601 | 2589 | 82 | Plus |
Dana\GF24528-PA | 583 | GF24528-PA | 154..430 | 228..522 | 574 | 41.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG25025-PA | 603 | GG25025-PA | 1..603 | 1..603 | 2957 | 95 | Plus |
Dere\GG13901-PA | 580 | GG13901-PA | 149..406 | 228..504 | 586 | 43.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH13229-PA | 599 | GH13229-PA | 1..591 | 1..582 | 2312 | 75.9 | Plus |
Dgri\GH16627-PA | 574 | GH16627-PA | 149..409 | 228..504 | 584 | 42.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG3008-PA | 603 | CG3008-PA | 1..603 | 1..603 | 3176 | 100 | Plus |
RIOK1-PB | 585 | CG11660-PB | 66..538 | 148..602 | 575 | 31.9 | Plus |
RIOK1-PA | 585 | CG11660-PA | 66..538 | 148..602 | 575 | 31.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI18109-PA | 619 | GI18109-PA | 1..611 | 1..593 | 2362 | 75.6 | Plus |
Dmoj\GI11584-PA | 578 | GI11584-PA | 149..409 | 228..504 | 582 | 42 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL18640-PA | 618 | GL18640-PA | 1..591 | 1..573 | 2475 | 80.7 | Plus |
Dper\GL16346-PA | 556 | GL16346-PA | 148..384 | 246..504 | 572 | 44 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA15630-PA | 618 | GA15630-PA | 1..591 | 1..573 | 2477 | 80.7 | Plus |
Dpse\GA11126-PA | 573 | GA11126-PA | 165..401 | 246..504 | 572 | 44 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM18498-PA | 603 | GM18498-PA | 1..603 | 1..603 | 3192 | 98 | Plus |
Dsec\GM24726-PA | 586 | GM24726-PA | 154..411 | 228..504 | 587 | 43.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD23306-PA | 583 | GD23306-PA | 1..583 | 1..603 | 3003 | 93.5 | Plus |
Dsim\GD12787-PA | 585 | GD12787-PA | 153..410 | 228..504 | 587 | 43.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ16296-PA | 615 | GJ16296-PA | 1..606 | 1..598 | 2349 | 75.4 | Plus |
Dvir\GJ11263-PA | 586 | GJ11263-PA | 157..417 | 228..504 | 583 | 42 | Plus |