Clone RE33807 Report

Search the DGRC for RE33807

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:338
Well:7
Vector:pFlc-1
Associated Gene/TranscriptCG3008-RA
Protein status:RE33807.pep: gold
Sequenced Size:2275

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3008 2001-12-17 Blastp of sequenced clone
CG3008 2002-01-01 Sim4 clustering to Release 2
CG3008 2008-04-29 Release 5.5 accounting
CG3008 2008-08-15 Release 5.9 accounting
CG3008 2008-12-18 5.12 accounting

Clone Sequence Records

RE33807.complete Sequence

2275 bp (2275 high quality bases) assembled on 2001-12-17

GenBank Submission: AY071312

> RE33807.complete
GGTTCTGCGATAGCTCGATACTTTCATAAGCTGATAATTTCACAACAATT
GGAAAAAGGATTGTTTGGAGAAATACAATAGAAATATTATTGCAACAAGG
GTTGCAATTGGCTTCCCCTTATATTGGTCATCTATAGTGCCAAAACTGTC
ACTTGTCCTCCACCGCGGACATATCAGAGTCCACCTGCAACCCGCCGTTG
GTCAGGATTTGGACAGAGGCTTGTTTGTAAACTGCCACAATTACCACCGA
TATAGAACTCGATCTTCTCAAGCCAAGTTCCAATAGAATGTCGTCGCCAT
GGGTTAAGACCAGCGAGCCTGTGCAGCAGGTGAATCTGGCGGATATAATG
TCGGAGCAATATGCCCACAAGTTGCACGACAAGGAGCTGCAGCGCCACAC
GGAGAAGCTGAAAAGACCGGACGAACAGATAGCACCCGTTTGGGGGTCGC
AAGCCTCATCCCCGCCAGCGCCCAATGCGCAGAGTATCCAAAGTGATGCG
GAGGATTGGGAGGATTACTCTGCGCTCCTCAATGACGAAGGAAACGTAGC
GGAGGACATTCAGCTGCCGGAAGACAGCGATGCAGTTATTGCCCAGCTGT
TGCAGTCCCAGTTCGATCACGAGTACAATGAGGAATTGCGTCGTATCGAG
CGGCAGCAAAACAAGCAATCCAAGGTCACTGTTACCCTCAATAAGTTCCT
ACGTGATGGCGATGCAGAGTTCTTGCACGACACCGCGGAAGATGACTACG
AAGAGGATGAATTGGAGCAACAGAAGCACGACTGGGATCGGTTCGAGGAC
AATGAACGGCAGCTTGACTCCATACCTCGCTGCGGCTTTAAAGTTAACAA
GGAGGGCGAGATGATAACAAAGCACGATCCGCAGCTGTGCGCCGTGCGTA
ATGCCCAGCGCGTGATGTCCTTTCCGCCGGAGTTTCCCACCGGTGATGCT
GCCGGTTTCGACATGAAGCTCTCCAATAAGGTGTTTAACCAACTACGAGC
CCATTCTCGACGAGGCCGCTCCGACAAGCACGAGAAAGTGGCCACCGCGG
AGATGGGATTGGATGCGGGTACACGTTTGCTGCTGTACAAGCTGATCAAT
AACCAAATACTGGAGCAGATCAACGGCATTATATCCACGGGCAAGGAGGC
GGTCATCTTGCACGCCAATTCCGATGCGAACTATACGGGCAGCAACGAGC
ATGGTCACCAGAGTGGTGTGCTCGTTCCACCGCAGCTTTTGCCCCGGGAG
TGTGCCATTAAAATCTTTAAAACCACGCTCAACGAGTTCAAGCAGCGCGA
TAGATACATCAAGGATGACTATCGGTTCAAGGATCGCTTTAGCAAACAAA
ACCACCGAGTGATTATCAATATGTGGGCCGAGAAGGAGATGCATAATCTG
ATGAGGATGCAAGCCATTGGCCTAAACGTTCCAGACGTTGTTGTGCTGAA
GAAGCACGTGCTGGTAATGCGGTTCATCGGTGACAATCATAACGCTGCGC
CCAAGTTAAAGGATGCCCGTCTGAGCGACGCGGAGCTGAGTTGCGCCTAC
GAAGAGATTGTGGCCGCGATGCACAAGTTGTACAATGAGGCGAAGCTGGT
GCACGCCGATATGAGCGAATATAACATACTCTGGTTCGAGGGCAAGTGCT
GGTTTATTGACGTGGCCCAGAGTGTCGAACCGAAGCATCCCAGTGCCCTG
GAGTTCCTGATGAGGGATTGCGGCAACATTGTTAACTTCTTTGAACGACG
CGGCCTGCCCAACATTTACACCAAGGAGCAGTTGTTCGAGTTTATTACGG
GTCTCAATTCAGAGGTCCACACCGCCGCTCAGCTGGAGCAGATCCACACG
CGTGGCGCTTCCATTAGCCAAGCCACTGCTCCGAATCAGGAGGAGTGCCC
CGACGAACTGAAACCCTTGGAGTATCCCTTTGAGCTGGCCTGGGAAAAAT
CACAACAAGATCGCGCTGCTCAAAAGGCTCTGCAGCAAGCGCAGGATAAT
AACGATAACAAAACCGACACGGATAAGGATCAAGAGACCGATGACAATGA
GAATGATAGTGACGACAAGGAAAAGATTAACAAAACTGCCAACCATTGAA
ACTTCTAAAGTGTGGACTCATTTAGTTTAGTTTTAAATTGATATTAACAG
TTTGGTCACAGAGATTCCATAGTAAAAGATATGATGCTTGTAGTCAAGTA
ACTTGACTATAAAATATCCCTCGAAAAAAAGAATAAATTGTTTTGTTTTT
CCACCCATGAAAAAAAAAAAAAAAA

RE33807.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:36:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG3008-RA 2394 CG3008-RA 136..2393 2..2259 11290 100 Plus
Cf2-RA 3818 Cf2-RA 1..39 40..2 195 100 Minus
Cf2.a 4141 Cf2.a 1..39 40..2 195 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 05:30:54
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 4883504..4884784 979..2259 6270 99.3 Plus
chr2L 23010047 chr2L 4882759..4883456 285..982 3460 99.7 Plus
chr2L 23010047 chr2L 4882419..4882702 2..286 1255 96.8 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:50:35 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 05:30:52
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4884389..4885673 979..2263 6410 99.9 Plus
2L 23513712 2L 4883644..4884341 285..982 3490 100 Plus
2L 23513712 2L 4883303..4883587 2..286 1425 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:03:58
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4884389..4885673 979..2263 6410 99.9 Plus
2L 23513712 2L 4883644..4884341 285..982 3490 100 Plus
2L 23513712 2L 4883303..4883587 2..286 1425 100 Plus
Blast to na_te.dros performed on 2019-03-16 05:30:53 has no hits.

RE33807.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 05:31:56 Download gff for RE33807.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 4882418..4882702 1..286 96 -> Plus
chr2L 4882761..4883454 287..980 99 -> Plus
chr2L 4883506..4884784 981..2259 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:10:38 Download gff for RE33807.complete
Subject Subject Range Query Range Percent Splice Strand
CG3008-RA 1..1812 288..2099 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:59:25 Download gff for RE33807.complete
Subject Subject Range Query Range Percent Splice Strand
CG3008-RA 1..1812 288..2099 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 08:27:34 Download gff for RE33807.complete
Subject Subject Range Query Range Percent Splice Strand
CG3008-RA 1..1812 288..2099 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:24:08 Download gff for RE33807.complete
Subject Subject Range Query Range Percent Splice Strand
CG3008-RA 1..1812 288..2099 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:04:02 Download gff for RE33807.complete
Subject Subject Range Query Range Percent Splice Strand
CG3008-RA 1..1812 288..2099 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:24:59 Download gff for RE33807.complete
Subject Subject Range Query Range Percent Splice Strand
CG3008-RA 132..2390 1..2259 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:59:25 Download gff for RE33807.complete
Subject Subject Range Query Range Percent Splice Strand
CG3008-RA 132..2390 1..2259 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:27:34 Download gff for RE33807.complete
Subject Subject Range Query Range Percent Splice Strand
CG3008-RA 5..2263 1..2259 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:24:08 Download gff for RE33807.complete
Subject Subject Range Query Range Percent Splice Strand
CG3008-RA 4..2262 1..2259 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:04:02 Download gff for RE33807.complete
Subject Subject Range Query Range Percent Splice Strand
CG3008-RA 5..2263 1..2259 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:31:56 Download gff for RE33807.complete
Subject Subject Range Query Range Percent Splice Strand
2L 4883302..4883587 1..286 99 -> Plus
2L 4883646..4884339 287..980 100 -> Plus
2L 4884391..4885669 981..2259 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:31:56 Download gff for RE33807.complete
Subject Subject Range Query Range Percent Splice Strand
2L 4883302..4883587 1..286 99 -> Plus
2L 4883646..4884339 287..980 100 -> Plus
2L 4884391..4885669 981..2259 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:31:56 Download gff for RE33807.complete
Subject Subject Range Query Range Percent Splice Strand
2L 4883302..4883587 1..286 99 -> Plus
2L 4883646..4884339 287..980 100 -> Plus
2L 4884391..4885669 981..2259 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:27:34 Download gff for RE33807.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 4883302..4883587 1..286 99 -> Plus
arm_2L 4883646..4884339 287..980 100 -> Plus
arm_2L 4884391..4885669 981..2259 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:59:19 Download gff for RE33807.complete
Subject Subject Range Query Range Percent Splice Strand
2L 4883302..4883587 1..286 99 -> Plus
2L 4883646..4884339 287..980 100 -> Plus
2L 4884391..4885669 981..2259 100   Plus

RE33807.hyp Sequence

Translation from 287 to 2098

> RE33807.hyp
MSSPWVKTSEPVQQVNLADIMSEQYAHKLHDKELQRHTEKLKRPDEQIAP
VWGSQASSPPAPNAQSIQSDAEDWEDYSALLNDEGNVAEDIQLPEDSDAV
IAQLLQSQFDHEYNEELRRIERQQNKQSKVTVTLNKFLRDGDAEFLHDTA
EDDYEEDELEQQKHDWDRFEDNERQLDSIPRCGFKVNKEGEMITKHDPQL
CAVRNAQRVMSFPPEFPTGDAAGFDMKLSNKVFNQLRAHSRRGRSDKHEK
VATAEMGLDAGTRLLLYKLINNQILEQINGIISTGKEAVILHANSDANYT
GSNEHGHQSGVLVPPQLLPRECAIKIFKTTLNEFKQRDRYIKDDYRFKDR
FSKQNHRVIINMWAEKEMHNLMRMQAIGLNVPDVVVLKKHVLVMRFIGDN
HNAAPKLKDARLSDAELSCAYEEIVAAMHKLYNEAKLVHADMSEYNILWF
EGKCWFIDVAQSVEPKHPSALEFLMRDCGNIVNFFERRGLPNIYTKEQLF
EFITGLNSEVHTAAQLEQIHTRGASISQATAPNQEECPDELKPLEYPFEL
AWEKSQQDRAAQKALQQAQDNNDNKTDTDKDQETDDNENDSDDKEKINKT
ANH*

RE33807.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:54:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG3008-PA 603 CG3008-PA 1..603 1..603 3176 100 Plus
RIOK1-PB 585 CG11660-PB 66..538 148..602 575 31.9 Plus
RIOK1-PA 585 CG11660-PA 66..538 148..602 575 31.9 Plus

RE33807.pep Sequence

Translation from 287 to 2098

> RE33807.pep
MSSPWVKTSEPVQQVNLADIMSEQYAHKLHDKELQRHTEKLKRPDEQIAP
VWGSQASSPPAPNAQSIQSDAEDWEDYSALLNDEGNVAEDIQLPEDSDAV
IAQLLQSQFDHEYNEELRRIERQQNKQSKVTVTLNKFLRDGDAEFLHDTA
EDDYEEDELEQQKHDWDRFEDNERQLDSIPRCGFKVNKEGEMITKHDPQL
CAVRNAQRVMSFPPEFPTGDAAGFDMKLSNKVFNQLRAHSRRGRSDKHEK
VATAEMGLDAGTRLLLYKLINNQILEQINGIISTGKEAVILHANSDANYT
GSNEHGHQSGVLVPPQLLPRECAIKIFKTTLNEFKQRDRYIKDDYRFKDR
FSKQNHRVIINMWAEKEMHNLMRMQAIGLNVPDVVVLKKHVLVMRFIGDN
HNAAPKLKDARLSDAELSCAYEEIVAAMHKLYNEAKLVHADMSEYNILWF
EGKCWFIDVAQSVEPKHPSALEFLMRDCGNIVNFFERRGLPNIYTKEQLF
EFITGLNSEVHTAAQLEQIHTRGASISQATAPNQEECPDELKPLEYPFEL
AWEKSQQDRAAQKALQQAQDNNDNKTDTDKDQETDDNENDSDDKEKINKT
ANH*

RE33807.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 03:09:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23540-PA 612 GF23540-PA 1..610 1..601 2589 82 Plus
Dana\GF24528-PA 583 GF24528-PA 154..430 228..522 574 41.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 03:09:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG25025-PA 603 GG25025-PA 1..603 1..603 2957 95 Plus
Dere\GG13901-PA 580 GG13901-PA 149..406 228..504 586 43.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 03:09:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13229-PA 599 GH13229-PA 1..591 1..582 2312 75.9 Plus
Dgri\GH16627-PA 574 GH16627-PA 149..409 228..504 584 42.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:26:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG3008-PA 603 CG3008-PA 1..603 1..603 3176 100 Plus
RIOK1-PB 585 CG11660-PB 66..538 148..602 575 31.9 Plus
RIOK1-PA 585 CG11660-PA 66..538 148..602 575 31.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 03:09:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18109-PA 619 GI18109-PA 1..611 1..593 2362 75.6 Plus
Dmoj\GI11584-PA 578 GI11584-PA 149..409 228..504 582 42 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 03:09:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18640-PA 618 GL18640-PA 1..591 1..573 2475 80.7 Plus
Dper\GL16346-PA 556 GL16346-PA 148..384 246..504 572 44 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 03:09:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15630-PA 618 GA15630-PA 1..591 1..573 2477 80.7 Plus
Dpse\GA11126-PA 573 GA11126-PA 165..401 246..504 572 44 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 03:09:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18498-PA 603 GM18498-PA 1..603 1..603 3192 98 Plus
Dsec\GM24726-PA 586 GM24726-PA 154..411 228..504 587 43.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 03:09:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23306-PA 583 GD23306-PA 1..583 1..603 3003 93.5 Plus
Dsim\GD12787-PA 585 GD12787-PA 153..410 228..504 587 43.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 03:09:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16296-PA 615 GJ16296-PA 1..606 1..598 2349 75.4 Plus
Dvir\GJ11263-PA 586 GJ11263-PA 157..417 228..504 583 42 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 03:09:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24469-PA 589 GK24469-PA 1..578 1..572 2489 79.2 Plus
Dwil\GK10469-PA 580 GK10469-PA 173..409 246..504 571 43.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 03:10:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18314-PA 603 GE18314-PA 1..603 1..603 3023 96 Plus
Dyak\GE20191-PA 584 GE20191-PA 153..410 228..504 584 42.9 Plus