Clone RE33854 Report

Search the DGRC for RE33854

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:338
Well:54
Vector:pFlc-1
Associated Gene/TranscriptEcR-RB
Protein status:RE33854.pep: gold
Sequenced Size:5961

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1765 2004-03-31 Blastp of sequenced clone
EcR 2008-04-29 Release 5.5 accounting
EcR 2008-08-15 Release 5.9 accounting
EcR 2008-12-18 5.12 accounting

Clone Sequence Records

RE33854.complete Sequence

5961 bp (5961 high quality bases) assembled on 2005-08-22

GenBank Submission: BT012469

> RE33854.complete
AGTATTTTTTTGGACTTTGTTGTTAACGGTTGTTCGCTCGCACGTACGAA
GCCCGATCGCGTTCGTCAAAAAACAAGATACAAAATACAGCACACACAAT
TGAAAACGACAACCTAACAGTACGGTTTCCCAAAGCACCTTACATTTCAA
AACCGAAAACCCCCAAAATGTTGTAACCAAATAATGTTTAAATCACATAT
ACACCTACATATATTTATGAAAAATTGTTAGACAAATCCCAAATAATACC
AGTTCCCCCAACAACCGCAACAAACACAAGTGCAATTCATCGGCAAAAAT
TAATATAAAGTGCAAATGCATTGTAGCTGAAACTCAAACAATAGTAAAAA
TACATACATAAGTGGTGAAGAAGCAAAAGGAAATAGTTCTTAAAATAACG
CAAATCGAGAGCATATATTCATATTTGTACAGATATTATATGGCGGCTGC
ATAGTGCAAACTGCGGCTGAGGGAATACAGCGGTATCGAAATGTAAATAG
GAAACAACGAAGCCAGAACTCGAAATCAAACATCAGCAACGTGACACACA
GACATAAGACGCCCGTCTAGTCGTGGTCTGTGGAACGCTAGCTCCGCTTT
GCCAGGAGCCGGAGACTTTTTCCGCATCCACAATATTACATATGTACATA
TATCGAAGATAGTGCGCGAGTGAGTGAGGGATTTGTGCCGTGGATCCCGA
TCCCCTTACATATATATAAAGGTAGTGAAAAGATTTTACTCAACATTCCA
AATAGTGCTTTGTCAACTGGAATACCTTTTGTTCAAATACGCAGTGGGCC
CATGGATACTTGTGGATTAGTAGCAGAACTGGCGCACTATATCGACGCAT
ATGCTCTGATTGTTTCCCGCACTAAATGAGCAGGGATTCGGGCGAAAATG
TATTTTGAACGCAAACAAGTGCGCAAAAAATACTAGCTCCACCACGAAAC
TGCACAAAACACCGCCAGAAGCGAGCAGAACCTCGGGCCGCACGACCGAG
CTTCGTAAAGCAACAGAGGATCTTACCAGGAGATAGCTCTTCTCCACATA
GACCAACTGCCAGGGACAAGCTCCTTGTCCCCAGCCGACGCTAAGTGAAC
GGAAAACGGCCACAAAACGGCGACTATCGGCTGCCAGAGGATGAAGCGGC
GCTGGTCGAACAACGGCGGCTTCATGCGCCTACCGGAGGAGTCGTCCTCG
GAGGTCACGTCCTCCTCGAACGGGCTCGTCCTGCCCTCGGGGGTGAACAT
GTCGCCCTCGTCGCTGGACTCGCACGACTATTGCGATCAGGACCTTTGGC
TCTGCGGCAACGAGTCCGGTTCGTTTGGCGGCTCCAACGGCCATGGCCTA
AGTCAGCAGCAGCAGAGCGTCATCACGCTGGCCATGCACGGGTGCTCCAG
CACTCTGCCCGCGCAGACAACCATCATTCCGATCAACGGCAACGCGAATG
GGAATGGAGGCTCCACCAATGGCCAATATGTGCCGGGTGCCACTAATCTG
GGAGCGTTGGCCAACGGGATGCTCAATGGGGGCTTCAATGGAATGCAGCA
ACAGATTCAGAATGGCCACGGCCTCATCAACTCCACAACGCCCTCAACGC
CGACCACCCCGCTCCACCTTCAGCAGAACCTGGGGGGCGCGGGCGGCGGC
GGTATCGGGGGAATGGGTATTCTTCACCACGCGAATGGCACCCCAAATGG
CCTTATCGGAGTTGTGGGAGGCGGCGGCGGAGTAGGTCTTGGAGTAGGCG
GAGGCGGAGTGGGAGGCCTGGGAATGCAGCACACACCCCGAAGCGATTCG
GTGAATTCTATATCTTCAGGTCGCGATGATCTCTCGCCTTCGAGCAGCTT
GAACGGATACTCGGCGAACGAAAGCTGCGATGCGAAGAAGAGCAAGAAGG
GACCTGCGCCACGGGTGCAAGAGGAGCTGTGCCTGGTTTGCGGCGACAGG
GCCTCCGGCTACCACTACAACGCCCTCACCTGTGAGGGCTGCAAGGGGTT
CTTTCGACGCAGCGTTACGAAGAGCGCCGTCTACTGCTGCAAGTTCGGGC
GCGCCTGCGAAATGGACATGTACATGAGGCGAAAGTGTCAGGAGTGCCGC
CTGAAAAAGTGCCTGGCCGTGGGTATGCGGCCGGAATGCGTCGTCCCGGA
GAACCAATGTGCGATGAAGCGGCGCGAAAAGAAGGCCCAGAAGGAGAAGG
ACAAAATGACCACTTCGCCGAGCTCTCAGCATGGCGGCAATGGCAGCTTG
GCCTCTGGTGGCGGCCAAGACTTTGTTAAGAAGGAGATTCTTGACCTTAT
GACATGCGAGCCGCCCCAGCATGCCACTATTCCGCTACTACCTGATGAAA
TATTGGCCAAGTGTCAAGCGCGCAATATACCTTCCTTAACGTACAATCAG
TTGGCCGTTATATACAAGTTAATTTGGTACCAGGATGGCTATGAGCAGCC
ATCTGAAGAGGATCTCAGGCGTATAATGAGTCAACCCGATGAGAACGAGA
GCCAAACGGACGTCAGCTTTCGGCATATAACCGAGATAACCATACTCACG
GTCCAGTTGATTGTTGAGTTTGCTAAAGGTCTACCAGCGTTTACAAAGAT
ACCCCAGGAGGACCAGATCACGTTACTAAAGGCCTGCTCGTCGGAGGTGA
TGATGCTGCGTATGGCACGACGCTATGACCACAGCTCGGACTCAATATTC
TTCGCGAATAATAGATCATATACGCGGGATTCTTACAAAATGGCCGGAAT
GGCTGATAACATTGAAGACCTGCTGCATTTCTGCCGCCAAATGTTCTCGA
TGAAGGTGGACAACGTCGAATACGCGCTTCTCACTGCCATTGTGATCTTC
TCGGACCGGCCGGGCCTGGAGAAGGCCCAACTAGTCGAAGCGATCCAGAG
CTACTACATCGACACGCTACGCATTTATATACTCAACCGCCACTGCGGCG
ACTCAATGAGCCTCGTCTTCTACGCAAAGCTGCTCTCGATCCTCACCGAG
CTGCGTACGCTGGGCAACCAGAACGCCGAGATGTGTTTCTCACTAAAGCT
CAAAAACCGCAAACTGCCCAAGTTCCTCGAGGAGATCTGGGACGTTCATG
CCATCCCGCCATCGGTCCAGTCGCACCTTCAGATTACCCAGGAGGAGAAC
GAGCGTCTCGAGCGGGCTGAGCGTATGCGGGCATCGGTTGGGGGCGCCAT
TACCGCCGGCATTGATTGCGACTCTGCCTCCACTTCGGCGGCGGCAGCCG
CGGCCCAGCATCAGCCTCAGCCTCAGCCCCAGCCCCAACCCTCCTCCCTG
ACCCAGAACGATTCCCAGCACCAGACACAGCCGCAGCTACAACCTCAGCT
ACCACCTCAGCTGCAAGGTCAACTGCAACCCCAGCTCCAACCACAGCTTC
AGACGCAACTCCAGCCACAGATTCAACCACAGCCACAGCTCCTTCCCGTC
TCCGCTCCCGTGCCCGCCTCCGTAACCGCACCTGGTTCCTTGTCCGCGGT
CAGTACGAGCAGCGAATACATGGGCGGAAGTGCGGCCATAGGACCCATCA
CGCCGGCAACCACCAGCAGTATCACGGCTGCCGTTACCGCTAGCTCCACC
ACATCAGCGGTACCGATGGGCAACGGAGTTGGAGTCGGTGTTGGGGTGGG
CGGCAACGTCAGCATGTATGCGAACGCCCAGACGGCGATGGCCTTGATGG
GTGTAGCCCTGCATTCGCACCAAGAGCAGCTTATCGGGGGAGTGGCGGTT
AAGTCGGAGCACTCGACGACTGCATAGCAGGCGCAGAGTCAGCTCCACCA
ACATCACCACCACAACATCGACGTCCTGCTGGAGTAGAAAGCGCAGCTGA
ACCCACACAGACATAGGGGAAATGGGGAAGTTCTCTCCAGAGAGTTCGAG
CCGAACTAAATAGTAAAAAGTGAATAATTAATGGACAAGCGTAAAATGCA
GTTATTTAGTCTTAAGCCTGCAAATATTACCTATTATTCATACAAATTAA
CATATAATACAGCCTATTAACAATTACGCTAAAGCTTAATTGAAAAAGCT
TCAACAACAATTGGACAAACGCGTTGAGGAACCGGGAGAAAATTTAAGAA
AAAAAAAACCATTGAAAATTATGAAATTTAGTATACATTTTTTTTGGGTG
GATGTATGTCGCATCAGACTCACGATCAATTCTCGAATTTTGTTAACTAA
ATTGATCCTCCAAACTGCATGCGAAACAGATCAGAAAAGAGAACAGACAG
TAGGGCGTGAACAGAGGGAAGAGAGAAGAGAATAAAGATTGTTTATATTT
AAAAAATATATAAAATAATAATTACTAACTCTAAACGTAATGAAAGCAAC
TGTATAATATCTAACTATAACTATAAATTCGTACTGTAGGGAAGTGAGAA
AATCTGTTAAATGGAACAAAAATAATGATAATAACATTATCATCCACCAT
AATTAAAATCATTTAAAGTAATTAAAAACAAAACACTTTTAAAACACGCA
AAACTTGGACTGATTTTATAAATATTTTTTAATCATAAAGAAAGGCAACC
TGAAAAAAATATTACAAAAACAAATAACAACATATTTTATTATGACACCC
TTATATGTTTTCAAAACGAGAATTTAAATTCTTAGATTCTTATAATTTCA
TCCAAAAATATTAGCCAGCAAAAACCTTTATTATTGGCATTGTTTTTAGA
CATGTTTTCAAAAAAAACTTTGATATTGAAACTAAACAAAGGATAATGAA
ATGAAAGTGATTGGAGTCTTACTCAAAAACCAAAAGGCATCAAAAGGTAT
TAAATTAAAAATATAATCTAATTTCGAGTTCAAGAAACACTTTTTGGTGG
AAAATAGTTTTCAATCACTTTGATAAAAACCACACAAATTAATAAATACA
TGCATACACCAAAAGACTTCAATATATATTTTTAAAATTTACATTGATAA
TTCGAAATTTGAATAAGAATCACATCCATCTAATTTGGCTAAATCAAAAT
TTTTATGAAAGCCACACAAAAAACGTGCAAATTTGATTACTTTGGCAATT
TTTATGTTATACAAAATTTATGCAATTGATTTTCAAAATAATTTTTATTA
GATTGTATTAGTTTCATTTTGCTTTGGGATGTACATTTTAAATAAATTTT
ACTTTAAATTGTTTGCCTTATTTTAACTTAAATCAAATTTATTCTAATTT
TAGTAAAAAAAAATGTGTTTAAAATTGAAAATAAGAACACTGTAAAATAT
TAATAAAAAATTAAAGTTTAAAGTGATTCTTTTATTATGTAAAAAGAAGA
CAAAAAATATCTTACGTAGCTTTCTACTTGAATTGTGCAATTTTTTACTT
TTACTACTAATCCTAATTTAAATATAATTTACACACACGCCTACACATCC
AGCCACATATTTTTAATTTTAAGTCAACCTAATTTATAAATATGAATTTG
TATAATGACGAACTAAAATTAGCATGACATCATGGACATACTTGGAAATA
ACTCTATCAAACGAGCTAAATGCATTGAAGAAGAAAATTCTTGTTAAATA
TAGTCTGCACTTCGACAAACGAAAATCAGTGAATTATTTATTCATATTAC
AAAGACGTTCGTGGGAAGCTCCAAGGGAATCCATGGACTATCCAGGCTCA
TTAAACTCTTTATTAGTTTCGTTTTTACAATAGGCCTTAGTTAAATTCCT
TCTAGCATGCATATTCAAGTACGTTCAATTATTATTATACAAATATACAA
AGTTACTTTTATACATACCTTGTTTTGTAGTTCTACACGTAATGTAAAGA
AACAAACTATCGAAATACGGATTATTTTTACCTTTTTACCTTATTTCTGC
AAGTGGAAAAGAGAAAGCAAGAAAAATGTATACAATATATGAGAAGTATG
TTGAAACAAAAATAAGAAAACAAAAAAATATTCAAAAACATAAACCAAAA
AAAAAAAAAAA

RE33854.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:01:34
Subject Length Description Subject Range Query Range Score Percent Strand
EcR-RF 5999 EcR-RF 40..5912 78..5950 29335 99.9 Plus
EcR.e 5215 EcR.e 57..5215 1..5159 25780 99.9 Plus
EcR-RC 5127 EcR-RC 909..5040 1819..5950 20630 99.9 Plus
EcR-RC 5127 EcR-RC 57..909 1..853 4265 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 22:54:40
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 1977550..1980866 5946..2630 16540 99.9 Minus
chr2R 21145070 chr2R 2009998..2010968 1821..853 4730 99.4 Minus
chr2R 21145070 chr2R 2018159..2019011 853..1 4250 99.9 Minus
chr2R 21145070 chr2R 1981688..1982205 2334..1817 2590 100 Minus
chr2R 21145070 chr2R 1980927..1981081 2632..2478 775 100 Minus
chr2R 21145070 chr2R 1981141..1981285 2478..2334 725 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:50:38 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 22:54:36
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6090415..6093735 5950..2630 16575 99.9 Minus
2R 25286936 2R 6122880..6123848 1821..853 4845 100 Minus
2R 25286936 2R 6131066..6131918 853..1 4265 100 Minus
2R 25286936 2R 6094557..6095074 2334..1817 2590 100 Minus
2R 25286936 2R 6093796..6093950 2632..2478 775 100 Minus
2R 25286936 2R 6094010..6094154 2478..2334 725 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:54:59
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 6091614..6094934 5950..2630 16575 99.9 Minus
2R 25260384 2R 6124079..6125047 1821..853 4845 100 Minus
2R 25260384 2R 6132265..6133117 853..1 4265 100 Minus
2R 25260384 2R 6095756..6096273 2334..1817 2590 100 Minus
2R 25260384 2R 6094995..6095149 2632..2478 775 100 Minus
2R 25260384 2R 6095209..6095353 2478..2334 725 100 Minus
Blast to na_te.dros performed 2019-03-16 22:54:38
Subject Length Description Subject Range Query Range Score Percent Strand
HMS-Beagle 7062 HMS-Beagle Beagle 7062bp 1054..1259 4473..4267 218 62.9 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2277..2545 3166..3443 206 58.5 Plus
P-element 2907 P-element PPI251 2907bp AKA(V01520,X69493) Derived from X06779 (g58305) (Rel. 49, Last updated, Version 8). 2450..2740 5345..5065 199 58.8 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2373..2545 3233..3398 164 57.8 Plus
1360 3409 1360 1360 3409bp 3022..3190 4911..5071 160 59.6 Plus
McClintock 6450 McClintock McCLINTOCK 6450bp 776..1234 4454..4916 151 52.6 Plus
Dana\Tom 7060 Dana\Tom DNTOMRETA 7060bp Derived from Z24451 (Rel. 44, Last updated, Version 6). 684..858 4396..4574 149 55.8 Plus
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 1208..1457 5365..5612 144 55.7 Plus
Max-element 8556 Max-element DME487856 8556bp Derived from AJ487856 (Rel. 71, Last updated, Version 1). 1028..1194 5128..5294 143 60 Plus
Transpac 5249 Transpac 5249bp Derived from AF222049 (AF222049.1) (Rel. 62, Last updated, Version 1). 3805..4074 5234..4975 142 54.3 Minus
Idefix 7411 Idefix DME9736 7411bp Derived from AJ009736 (e1371475) (Rel. 58, Last updated, Version 1). 708..767 4515..4575 140 72.1 Plus
Damb\P-element_T 3329 Damb\P-element_T P_T 3329bp Derived from AF012414. 1972..2023 119..66 139 75.9 Minus
transib4 2656 transib4 TRANSIB4 2656bp 220..524 4852..4556 136 56.1 Minus
jockey 5020 jockey DMLINEJA 5020bp Derived from M22874 (g157823) (Rel. 47, Last updated, Version 5). 4820..5020 4297..4503 136 56.5 Plus
TART-C 11124 TART-C TARTC 11124bp 10987..11123 4874..5023 133 60.7 Plus
copia 5143 copia DMCOPIA 5143bp Derived from X02599 (g7740) (Rel. 49, Last updated, Version 4). 1155..1195 4281..4321 133 80.5 Plus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3228..3345 3319..3442 130 58.1 Plus
Idefix 7411 Idefix DME9736 7411bp Derived from AJ009736 (e1371475) (Rel. 58, Last updated, Version 1). 6275..6326 5083..5031 127 73.6 Minus
HMS-Beagle 7062 HMS-Beagle Beagle 7062bp 1105..1401 5378..5093 121 54.6 Minus
Rt1b 5171 Rt1b RT1B 5150bp 2272..2306 2264..2230 121 82.9 Minus

RE33854.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 22:55:36 Download gff for RE33854.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 1977597..1980053 3443..5899 95 == Minus
chr2R 1980183..1980864 2632..3313 94 <- Minus
chr2R 1980928..1981080 2479..2631 100 <- Minus
chr2R 1981141..1981284 2335..2478 100 <- Minus
chr2R 1981688..1982202 1820..2334 100 <- Minus
chr2R 2010000..2010967 854..1819 97 <- Minus
chr2R 2018159..2019011 1..853 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 16:49:10 Download gff for RE33854.complete
Subject Subject Range Query Range Percent Splice Strand
EcR-RB 1..2637 1141..3777 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:53:23 Download gff for RE33854.complete
Subject Subject Range Query Range Percent Splice Strand
EcR-RG 1..2637 1141..3777 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:17:34 Download gff for RE33854.complete
Subject Subject Range Query Range Percent Splice Strand
EcR-RB 1..2637 1141..3777 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:57:46 Download gff for RE33854.complete
Subject Subject Range Query Range Percent Splice Strand
EcR-RB 1..2637 1141..3777 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:44:55 Download gff for RE33854.complete
Subject Subject Range Query Range Percent Splice Strand
EcR-RB 1..2637 1141..3777 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:49:07 Download gff for RE33854.complete
Subject Subject Range Query Range Percent Splice Strand
EcR-RB 2..5586 1..5585 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:53:23 Download gff for RE33854.complete
Subject Subject Range Query Range Percent Splice Strand
EcR-RG 2..5874 75..5946 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:17:34 Download gff for RE33854.complete
Subject Subject Range Query Range Percent Splice Strand
EcR-RG 1..5869 78..5946 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:57:46 Download gff for RE33854.complete
Subject Subject Range Query Range Percent Splice Strand
EcR-RB 2..5586 1..5585 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:44:55 Download gff for RE33854.complete
Subject Subject Range Query Range Percent Splice Strand
EcR-RG 1..5869 78..5946 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:55:36 Download gff for RE33854.complete
Subject Subject Range Query Range Percent Splice Strand
2R 6090419..6093733 2632..5946 99 <- Minus
2R 6093797..6093949 2479..2631 100 <- Minus
2R 6094010..6094153 2335..2478 100 <- Minus
2R 6094557..6095071 1820..2334 100 <- Minus
2R 6122882..6123847 854..1819 100 <- Minus
2R 6131066..6131918 1..853 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:55:36 Download gff for RE33854.complete
Subject Subject Range Query Range Percent Splice Strand
2R 6090419..6093733 2632..5946 99 <- Minus
2R 6093797..6093949 2479..2631 100 <- Minus
2R 6094010..6094153 2335..2478 100 <- Minus
2R 6094557..6095071 1820..2334 100 <- Minus
2R 6122882..6123847 854..1819 100 <- Minus
2R 6131066..6131918 1..853 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:55:36 Download gff for RE33854.complete
Subject Subject Range Query Range Percent Splice Strand
2R 6090419..6093733 2632..5946 99 <- Minus
2R 6093797..6093949 2479..2631 100 <- Minus
2R 6094010..6094153 2335..2478 100 <- Minus
2R 6094557..6095071 1820..2334 100 <- Minus
2R 6122882..6123847 854..1819 100 <- Minus
2R 6131066..6131918 1..853 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:17:34 Download gff for RE33854.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 1977924..1981238 2632..5946 99 <- Minus
arm_2R 1981302..1981454 2479..2631 100 <- Minus
arm_2R 1981515..1981658 2335..2478 100 <- Minus
arm_2R 1982062..1982576 1820..2334 100 <- Minus
arm_2R 2010387..2011352 854..1819 100 <- Minus
arm_2R 2018571..2019423 1..853 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:31:00 Download gff for RE33854.complete
Subject Subject Range Query Range Percent Splice Strand
2R 6091618..6094932 2632..5946 99 <- Minus
2R 6094996..6095148 2479..2631 100 <- Minus
2R 6095209..6095352 2335..2478 100 <- Minus
2R 6095756..6096270 1820..2334 100 <- Minus
2R 6124081..6125046 854..1819 100 <- Minus
2R 6132265..6133117 1..853 100   Minus

RE33854.hyp Sequence

Translation from 1140 to 3776

> RE33854.hyp
MKRRWSNNGGFMRLPEESSSEVTSSSNGLVLPSGVNMSPSSLDSHDYCDQ
DLWLCGNESGSFGGSNGHGLSQQQQSVITLAMHGCSSTLPAQTTIIPING
NANGNGGSTNGQYVPGATNLGALANGMLNGGFNGMQQQIQNGHGLINSTT
PSTPTTPLHLQQNLGGAGGGGIGGMGILHHANGTPNGLIGVVGGGGGVGL
GVGGGGVGGLGMQHTPRSDSVNSISSGRDDLSPSSSLNGYSANESCDAKK
SKKGPAPRVQEELCLVCGDRASGYHYNALTCEGCKGFFRRSVTKSAVYCC
KFGRACEMDMYMRRKCQECRLKKCLAVGMRPECVVPENQCAMKRREKKAQ
KEKDKMTTSPSSQHGGNGSLASGGGQDFVKKEILDLMTCEPPQHATIPLL
PDEILAKCQARNIPSLTYNQLAVIYKLIWYQDGYEQPSEEDLRRIMSQPD
ENESQTDVSFRHITEITILTVQLIVEFAKGLPAFTKIPQEDQITLLKACS
SEVMMLRMARRYDHSSDSIFFANNRSYTRDSYKMAGMADNIEDLLHFCRQ
MFSMKVDNVEYALLTAIVIFSDRPGLEKAQLVEAIQSYYIDTLRIYILNR
HCGDSMSLVFYAKLLSILTELRTLGNQNAEMCFSLKLKNRKLPKFLEEIW
DVHAIPPSVQSHLQITQEENERLERAERMRASVGGAITAGIDCDSASTSA
AAAAAQHQPQPQPQPQPSSLTQNDSQHQTQPQLQPQLPPQLQGQLQPQLQ
PQLQTQLQPQIQPQPQLLPVSAPVPASVTAPGSLSAVSTSSEYMGGSAAI
GPITPATTSSITAAVTASSTTSAVPMGNGVGVGVGVGGNVSMYANAQTAM
ALMGVALHSHQEQLIGGVAVKSEHSTTA*

RE33854.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:21:38
Subject Length Description Subject Range Query Range Score Percent Strand
EcR-PG 878 CG1765-PG 1..878 1..878 4579 100 Plus
EcR-PB 878 CG1765-PB 1..878 1..878 4579 100 Plus
EcR-PE 849 CG1765-PE 197..849 226..878 3373 99.8 Plus
EcR-PD 849 CG1765-PD 197..849 226..878 3373 99.8 Plus
EcR-PA 849 CG1765-PA 197..849 226..878 3373 99.8 Plus

RE33854.pep Sequence

Translation from 1140 to 3776

> RE33854.pep
MKRRWSNNGGFMRLPEESSSEVTSSSNGLVLPSGVNMSPSSLDSHDYCDQ
DLWLCGNESGSFGGSNGHGLSQQQQSVITLAMHGCSSTLPAQTTIIPING
NANGNGGSTNGQYVPGATNLGALANGMLNGGFNGMQQQIQNGHGLINSTT
PSTPTTPLHLQQNLGGAGGGGIGGMGILHHANGTPNGLIGVVGGGGGVGL
GVGGGGVGGLGMQHTPRSDSVNSISSGRDDLSPSSSLNGYSANESCDAKK
SKKGPAPRVQEELCLVCGDRASGYHYNALTCEGCKGFFRRSVTKSAVYCC
KFGRACEMDMYMRRKCQECRLKKCLAVGMRPECVVPENQCAMKRREKKAQ
KEKDKMTTSPSSQHGGNGSLASGGGQDFVKKEILDLMTCEPPQHATIPLL
PDEILAKCQARNIPSLTYNQLAVIYKLIWYQDGYEQPSEEDLRRIMSQPD
ENESQTDVSFRHITEITILTVQLIVEFAKGLPAFTKIPQEDQITLLKACS
SEVMMLRMARRYDHSSDSIFFANNRSYTRDSYKMAGMADNIEDLLHFCRQ
MFSMKVDNVEYALLTAIVIFSDRPGLEKAQLVEAIQSYYIDTLRIYILNR
HCGDSMSLVFYAKLLSILTELRTLGNQNAEMCFSLKLKNRKLPKFLEEIW
DVHAIPPSVQSHLQITQEENERLERAERMRASVGGAITAGIDCDSASTSA
AAAAAQHQPQPQPQPQPSSLTQNDSQHQTQPQLQPQLPPQLQGQLQPQLQ
PQLQTQLQPQIQPQPQLLPVSAPVPASVTAPGSLSAVSTSSEYMGGSAAI
GPITPATTSSITAAVTASSTTSAVPMGNGVGVGVGVGGNVSMYANAQTAM
ALMGVALHSHQEQLIGGVAVKSEHSTTA*

RE33854.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 06:33:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13818-PA 850 GF13818-PA 1..701 1..692 2997 86.7 Plus
Dana\GF17240-PA 826 GF17240-PA 205..520 264..637 326 26.8 Plus
Dana\GF12134-PA 448 GF12134-PA 51..395 264..570 306 28.2 Plus
Dana\GF14553-PA 1093 GF14553-PA 750..1087 247..650 288 25.6 Plus
Dana\GF25223-PA 1399 GF25223-PA 437..771 282..653 276 26.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 06:33:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10830-PA 854 GG10830-PA 198..854 226..878 2898 94.1 Plus
Dere\GG25225-PA 702 GG25225-PA 266..697 264..654 331 26 Plus
Dere\GG15765-PA 1370 GG15765-PA 425..758 282..652 274 26.5 Plus
Dere\GG11347-PA 723 GG11347-PA 7..114 264..376 263 38.9 Plus
Dere\GG15724-PA 1039 GG15724-PA 517..590 261..334 262 56.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 06:33:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20948-PA 893 GH20948-PA 1..754 1..700 2783 76.3 Plus
Dgri\GH20117-PA 487 GH20117-PA 51..395 264..570 321 28.5 Plus
Dgri\Hr96-PA 775 GH22240-PA 7..99 264..356 266 46.2 Plus
Dgri\GH17194-PA 965 GH17194-PA 449..522 261..334 261 56.8 Plus
Dgri\GH14445-PA 1775 GH14445-PA 737..1066 286..652 260 25.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:53:11
Subject Length Description Subject Range Query Range Score Percent Strand
EcR-PG 878 CG1765-PG 1..878 1..878 4579 100 Plus
EcR-PB 878 CG1765-PB 1..878 1..878 4579 100 Plus
EcR-PE 849 CG1765-PE 197..849 226..878 3373 99.8 Plus
EcR-PD 849 CG1765-PD 197..849 226..878 3373 99.8 Plus
EcR-PA 849 CG1765-PA 197..849 226..878 3373 99.8 Plus
EcR-PC 669 CG1765-PC 18..669 227..878 3372 100 Plus
Eip75B-PF 1412 CG8127-PF 414..880 212..723 384 27.8 Plus
Eip75B-PE 1412 CG8127-PE 414..880 212..723 384 27.8 Plus
Eip75B-PB 1412 CG8127-PB 414..880 212..723 384 27.8 Plus
Eip75B-PG 991 CG8127-PG 36..459 263..723 374 28 Plus
Eip75B-PC 1199 CG8127-PC 244..667 263..723 374 28 Plus
svp-PB 543 CG11502-PB 112..515 160..637 345 26.7 Plus
svp-PE 554 CG11502-PE 112..515 160..637 345 26.7 Plus
Hr38-PD 836 CG1864-PD 487..818 241..639 345 27.5 Plus
Hr38-PB 1078 CG1864-PB 729..1060 241..639 345 27.5 Plus
Hr3-PH 529 CG33183-PH 27..529 242..723 327 24.9 Plus
svp-PA 746 CG11502-PA 112..741 160..867 325 23.6 Plus
Hr3-PF 487 CG33183-PF 27..480 242..652 322 25.3 Plus
Hr3-PA 487 CG33183-PA 27..480 242..652 322 25.3 Plus
Hr3-PC 694 CG33183-PC 216..687 220..652 322 24.3 Plus
Hr3-PI 871 CG33183-PI 393..864 220..652 322 24.3 Plus
Hr3-PD 456 CG33183-PD 14..449 258..652 320 25.6 Plus
usp-PB 508 CG4380-PB 48..500 210..657 303 26.1 Plus
usp-PA 508 CG4380-PA 48..500 210..657 303 26.1 Plus
ftz-f1-PC 803 CG4059-PC 179..354 155..334 292 38.6 Plus
ftz-f1-PA 803 CG4059-PA 179..354 155..334 292 38.6 Plus
ftz-f1-PD 853 CG4059-PD 179..354 155..334 292 38.6 Plus
ftz-f1-PB 1027 CG4059-PB 403..578 155..334 292 38.6 Plus
Hnf4-PF 666 CG9310-PF 14..185 152..345 279 34.5 Plus
Hnf4-PE 704 CG9310-PE 52..223 152..345 279 34.5 Plus
Hnf4-PA 704 CG9310-PA 52..223 152..345 279 34.5 Plus
Hnf4-PD 708 CG9310-PD 56..227 152..345 279 34.5 Plus
Hnf4-PB 732 CG9310-PB 80..251 152..345 279 34.5 Plus
ERR-PA 484 CG7404-PA 75..450 195..622 278 23.4 Plus
ERR-PB 496 CG7404-PB 87..462 195..622 278 23.4 Plus
Eip75B-PA 1355 CG8127-PA 419..823 282..723 275 25.7 Plus
Hr78-PF 601 CG7199-PF 42..152 254..369 272 47.4 Plus
Hr78-PE 601 CG7199-PE 42..152 254..369 272 47.4 Plus
Hr78-PB 601 CG7199-PB 42..152 254..369 272 47.4 Plus
Hr78-PD 601 CG7199-PD 42..152 254..369 272 47.4 Plus
Hr78-PC 601 CG7199-PC 42..152 254..369 272 47.4 Plus
Hr78-PA 599 CG7199-PA 42..150 254..369 258 47.4 Plus
Hr96-PA 723 CG11783-PA 7..112 264..374 245 39.6 Plus
Eip78C-PE 862 CG18023-PE 339..433 231..334 224 46.2 Plus
Eip78C-PD 862 CG18023-PD 339..433 231..334 224 46.2 Plus
Eip78C-PA 862 CG18023-PA 339..433 231..334 224 46.2 Plus
Hr51-PC 582 CG16801-PC 110..187 263..339 219 50 Plus
tll-PA 452 CG1378-PA 34..343 264..574 217 23.8 Plus
Hr4-PC 1518 CG43934-PC 773..986 72..329 214 27.6 Plus
Hr4-PD 1529 CG43934-PD 783..996 72..329 214 27.6 Plus
Hr4-PF 1611 CG43934-PF 866..1079 72..329 214 27.6 Plus
Eip78C-PE 862 CG18023-PE 673..855 471..652 182 28.1 Plus
Eip78C-PD 862 CG18023-PD 673..855 471..652 182 28.1 Plus
Eip78C-PA 862 CG18023-PA 673..855 471..652 182 28.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 06:33:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21285-PA 835 GI21285-PA 1..720 1..700 2893 81 Plus
Dmoj\GI20211-PA 487 GI20211-PA 51..482 264..654 327 25.6 Plus
Dmoj\GI22223-PA 774 GI22223-PA 7..111 264..373 280 43.6 Plus
Dmoj\GI13962-PA 757 GI13962-PA 241..314 261..334 257 56.8 Plus
Dmoj\GI13580-PA 1429 GI13580-PA 462..789 286..650 255 26.2 Plus
Dmoj\GI21285-PA 835 GI21285-PA 745..833 768..877 161 45.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 06:33:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16258-PA 949 GL16258-PA 293..949 220..878 2607 79.9 Plus
Dper\GL16258-PA 949 GL16258-PA 1..176 1..152 488 70.5 Plus
Dper\GL10487-PA 487 GL10487-PA 51..395 264..570 315 27.7 Plus
Dper\GL25259-PA 950 GL25259-PA 420..493 261..334 262 56.8 Plus
Dper\GL12781-PA 593 GL12781-PA 42..124 262..346 252 55.3 Plus
Dper\GL22274-PA 777 GL22274-PA 196..266 264..334 247 56.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 06:33:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA24101-PA 898 GA24101-PA 1..898 1..878 3109 76 Plus
Dpse\GA24101-PB 663 GA24101-PB 18..663 227..878 2620 79.7 Plus
Dpse\EcR-PB 647 GA14596-PB 1..647 228..878 2613 79.6 Plus
Dpse\GA27660-PA 260 GA27660-PA 2..177 1..152 458 69.9 Plus
Dpse\GA17350-PA 487 GA17350-PA 51..395 264..570 315 27.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 06:33:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16480-PA 884 GM16480-PA 1..884 1..878 4614 98.3 Plus
Dsec\GM11643-PA 1351 GM11643-PA 415..748 282..652 275 26.5 Plus
Dsec\GM24010-PA 1085 GM24010-PA 200..458 264..571 266 25.1 Plus
Dsec\GM17786-PA 722 GM17786-PA 7..114 264..376 263 38.9 Plus
Dsec\GM22136-PA 601 GM22136-PA 42..132 254..346 258 51.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 06:33:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10334-PA 882 GD10334-PA 1..882 1..878 4610 98.2 Plus
Dsim\GD18809-PA 680 GD18809-PA 200..515 264..637 325 27 Plus
Dsim\GD12327-PA 1024 GD12327-PA 502..575 261..334 261 56.8 Plus
Dsim\GD12114-PA 601 GD12114-PA 42..132 254..346 258 51.6 Plus
Dsim\GD21158-PA 718 GD21158-PA 7..99 264..356 258 43 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 06:33:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20887-PA 850 GJ20887-PA 1..732 1..700 2888 80.8 Plus
Dvir\GJ20161-PA 487 GJ20161-PA 51..482 264..654 327 25.4 Plus
Dvir\GJ24344-PA 772 GJ24344-PA 7..104 264..366 270 44.7 Plus
Dvir\GJ13743-PA 1022 GJ13743-PA 488..561 261..334 261 56.8 Plus
Dvir\GJ13789-PA 633 GJ13789-PA 52..120 262..330 252 62.3 Plus
Dvir\GJ20887-PA 850 GJ20887-PA 774..848 784..877 159 54.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 06:33:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21996-PA 840 GK21996-PA 174..664 226..694 2401 90 Plus
Dwil\GK20573-PA 930 GK20573-PA 337..690 263..653 380 28.5 Plus
Dwil\GK18019-PA 524 GK18019-PA 53..397 264..570 328 28.8 Plus
Dwil\GK11542-PA 835 GK11542-PA 198..513 264..637 324 27.1 Plus
Dwil\GK14276-PA 744 GK14276-PA 7..111 264..373 284 44.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 06:33:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19426-PA 863 GE19426-PA 1..863 1..878 3623 94.4 Plus
Dyak\GE21721-PA 487 GE21721-PA 51..480 264..652 323 26.1 Plus
Dyak\GE23543-PA 715 GE23543-PA 7..114 264..376 264 38.9 Plus
Dyak\GE22055-PA 1039 GE22055-PA 517..590 261..334 261 56.8 Plus
Dyak\GE22327-PA 599 GE22327-PA 50..132 262..346 256 55.3 Plus