Associations are from manual ordering of a clone or by a periodic analysis.
Clone Sequence Records
RE33981.complete Sequence
2236 bp (2236 high quality bases) assembled on 2001-12-14
GenBank Submission: AY071316
> RE33981.complete
TGACATTAACTTTATCTGAATATATATACACAATTTTATAACTTATGCTA
GAATGGATTTTAATAATGACTTATCGCCTATTGATATTTTGACATTTATA
ACAGATGAACTGTTGCAAGCATACAAAAGCAGTAAAGGAGAAAATGAAAA
GGCTGGGACAATTGTCAAGTTTCTTGACCGATGGAATGACGATATCTCCA
TTGCAAAACTCAAGGATCTCACTGTTGAATTTGAATCAGATTTAGAGTGG
TTCAATGTAAGTTGCCCCTTATCGATAAAAGGACTGCAAGGAAAAGTTAT
CATATTAGACTTTTTCACATATTGCTGCATTAATTGTATGCATGTGCTGC
AAGAGTTGCACTTATTGGAAGAACGCTTTCCAATAGAAAGTGGTGTTGTA
GTAATCGGTGTTCACAGTCCTAAGTTTGAAAATGAACGCAATGCGGCAAA
CATTCTGTCCGCTGTACAACGATATGGAATATCACATCCCATTGTCAATG
ATTCACGATCTGGAATGTGGCGCGCTCTTGGAATTCGTTGCTGGCCTTCT
CTTTTGATTCTAAGCCCGACTGGTGTTCCGATGATGTTATTAATGGGTGA
AGGGCATGGAAAATTCCTACAGGATTTTTTTTCTTCTGCCCTATCGTATT
TTAGCCGTCAGGGTATAATTGACCATAGGGGTTTACCTTTAAAATTATTT
AATGACTTTCAACCAGCATCTAACTTGCGTTTTCCCGCAAAGATTGTTCA
AGGCCCTAATGGCCTGTATGCTATTGCTGATACGGGGAACAACAGGGTGC
TTGTGCTTACAGCAGGCGGTGTGGTACAGCACAGAATTGGAGGACACCAG
CCTGGTTTCGTGGATGGAGACCTAACAGTGGCACGGTTTAATAATCCTCA
AGGCATTGCGTTTCTTAATGAAAACGTTTTGATTGTAGCGGACACTAAAA
ACCACGCCATTCGTCAGATCTCTCTAACAAATGCAATGGTGGAAACTCTT
GCTGGCACAGGAATTCAGGGAAATGATCGAATAGGTGGACGTCTAGGACC
ATTGCAACCACTGTCGTCACCGTGGGATGTTGCCATATTTCGAACGAGGG
ACATGGATATGTCCTTTCATCTTGATGAACGTAACATACCAGAAAAAACA
ATTATCCTTATATCCATGGCAGGCACCCACCAGATTTGGGGCTATTTTCC
CGAAGGAATTATTTGGTGGAAATTTCGTAAATTTGAGCCTTGTTGCTGTG
TCTCACTAATAGGAAATGGTTTGGAAGAGAACCGTAATAATTCTTACCCA
CAGAACGCTGCATTCGCACAGCCATCTGGCCTGGCCATAGCGGGAGACGT
TTTATATATAGCTGACAGCGAAAGCTCTAGCATACGCAAAGCTTCTATGA
TAGATGGAAAGGTTATGCCTGTCGTCGGAGGAGATCGAAACCCACTTAAT
TTATTTGCATTTGGCGACATTGACGGTAGACTATTCAGCGCGAAACTCCA
ACATCCGTTAGGAGTGACTTTCAATGATACCAATAACAAACTCTATGTTG
CTGATACCTATAATCATAAAATCAAAATTATTGACATCGATTCAAATGAT
ATATCTACTCTACAAATTAAGAGCCAAGAAAATACTAACCTGATTTTAAA
CGAGCCCGCCGGACTGTGCTTGGATGCCAGCGGACGGAATTTGTTGGTAG
CTGATACCAATAACCATTCAATACATACAATAGATTTGGTAACGCTTATA
GCACAACCGTTTGGCTTAGATTTCAGACAAATAGCGTCCGCTAGTGAAAT
TGATGCGCCACAAGATACACAAAAGCCTACGGAAAATAATATAGTTAAAG
CATTGCCTCTTGATTTAATTAAACCAAGTAAAATTTTTTTTAACCTTCGG
CTTTCGCCCAGATTTAACTTTACAAAGGAAGCTCCTCAAAAATGGATAGT
GAAAACTGTATGTCAATCTGTAATAGTAAATCCAACGTGCGGAAATCTAC
TTGATGGGATGTGCCACATGCAGGTGCAGGCTACTAGGCCTGATTTTATG
TGTGAAAGCAGTCAAATATTTACCATCGAATTCGTATTAAATTTATGCCT
TTCAAATTGTTGCCTAGTAAAAAAAATCACGGTTTCTATAAAACGCGATG
ACATACAAGAAGAATATATATCCATCCACAACGTAAATATTGACATTGAA
CAATAAAAAATGTTTTGATAGAAAAAAAAAAAAAAA
RE33981.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 19:41:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12547-RA | 2704 | CG12547-RA | 39..2261 | 3..2225 | 11115 | 100 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-16 05:32:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr2R | 21145070 | chr2R | 674709..675920 | 1447..236 | 6060 | 100 | Minus |
chr2R | 21145070 | chr2R | 673873..674646 | 2221..1448 | 3870 | 100 | Minus |
chr2R | 21145070 | chr2R | 675971..676207 | 239..3 | 1185 | 100 | Minus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:50:43 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 05:32:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 4787138..4788349 | 1447..236 | 6060 | 100 | Minus |
2R | 25286936 | 2R | 4786298..4787075 | 2225..1448 | 3890 | 100 | Minus |
2R | 25286936 | 2R | 4788400..4788636 | 239..3 | 1185 | 100 | Minus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:08:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25260384 | 2R | 4788337..4789548 | 1447..236 | 6060 | 100 | Minus |
2R | 25260384 | 2R | 4787497..4788274 | 2225..1448 | 3890 | 100 | Minus |
2R | 25260384 | 2R | 4789599..4789835 | 239..3 | 1185 | 100 | Minus |
Blast to na_te.dros performed 2019-03-16 05:32:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tabor | 7345 | Tabor TABOR 7345bp | 6295..6355 | 95..37 | 120 | 68.9 | Minus |
RE33981.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 05:33:44 Download gff for
RE33981.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr2R | 673873..674646 | 1448..2221 | 100 | <- | Minus |
chr2R | 674709..675916 | 240..1447 | 100 | <- | Minus |
chr2R | 675971..676209 | 1..239 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:10:50 Download gff for
RE33981.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12547-RA | 1..2154 | 53..2206 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:07:19 Download gff for
RE33981.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12547-RA | 1..2154 | 53..2206 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 08:27:44 Download gff for
RE33981.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12547-RA | 1..2154 | 53..2206 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:31:43 Download gff for
RE33981.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12547-RA | 1..2154 | 53..2206 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:04:42 Download gff for
RE33981.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12547-RA | 1..2154 | 53..2206 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:35:54 Download gff for
RE33981.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12547-RA | 1..2221 | 1..2221 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:07:19 Download gff for
RE33981.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12547-RA | 1..2221 | 1..2221 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:27:44 Download gff for
RE33981.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12547-RA | 5..2225 | 1..2221 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:31:43 Download gff for
RE33981.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12547-RA | 1..2221 | 1..2221 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:04:42 Download gff for
RE33981.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12547-RA | 5..2225 | 1..2221 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:33:44 Download gff for
RE33981.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 4786302..4787075 | 1448..2221 | 100 | <- | Minus |
2R | 4787138..4788345 | 240..1447 | 100 | <- | Minus |
2R | 4788400..4788638 | 1..239 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:33:44 Download gff for
RE33981.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 4786302..4787075 | 1448..2221 | 100 | <- | Minus |
2R | 4787138..4788345 | 240..1447 | 100 | <- | Minus |
2R | 4788400..4788638 | 1..239 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:33:44 Download gff for
RE33981.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 4786302..4787075 | 1448..2221 | 100 | <- | Minus |
2R | 4787138..4788345 | 240..1447 | 100 | <- | Minus |
2R | 4788400..4788638 | 1..239 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:27:44 Download gff for
RE33981.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 673807..674580 | 1448..2221 | 100 | <- | Minus |
arm_2R | 674643..675850 | 240..1447 | 100 | <- | Minus |
arm_2R | 675905..676143 | 1..239 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:08:22 Download gff for
RE33981.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 4787501..4788274 | 1448..2221 | 100 | <- | Minus |
2R | 4788337..4789544 | 240..1447 | 100 | <- | Minus |
2R | 4789599..4789837 | 1..239 | 99 | | Minus |
RE33981.pep Sequence
Translation from 52 to 2205
> RE33981.pep
MDFNNDLSPIDILTFITDELLQAYKSSKGENEKAGTIVKFLDRWNDDISI
AKLKDLTVEFESDLEWFNVSCPLSIKGLQGKVIILDFFTYCCINCMHVLQ
ELHLLEERFPIESGVVVIGVHSPKFENERNAANILSAVQRYGISHPIVND
SRSGMWRALGIRCWPSLLILSPTGVPMMLLMGEGHGKFLQDFFSSALSYF
SRQGIIDHRGLPLKLFNDFQPASNLRFPAKIVQGPNGLYAIADTGNNRVL
VLTAGGVVQHRIGGHQPGFVDGDLTVARFNNPQGIAFLNENVLIVADTKN
HAIRQISLTNAMVETLAGTGIQGNDRIGGRLGPLQPLSSPWDVAIFRTRD
MDMSFHLDERNIPEKTIILISMAGTHQIWGYFPEGIIWWKFRKFEPCCCV
SLIGNGLEENRNNSYPQNAAFAQPSGLAIAGDVLYIADSESSSIRKASMI
DGKVMPVVGGDRNPLNLFAFGDIDGRLFSAKLQHPLGVTFNDTNNKLYVA
DTYNHKIKIIDIDSNDISTLQIKSQENTNLILNEPAGLCLDASGRNLLVA
DTNNHSIHTIDLVTLIAQPFGLDFRQIASASEIDAPQDTQKPTENNIVKA
LPLDLIKPSKIFFNLRLSPRFNFTKEAPQKWIVKTVCQSVIVNPTCGNLL
DGMCHMQVQATRPDFMCESSQIFTIEFVLNLCLSNCCLVKKITVSIKRDD
IQEEYISIHNVNIDIEQ*
RE33981.pep Blast Records
Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 20:55:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dana\GF16360-PA | 300 | GF16360-PA | 1..288 | 181..468 | 1164 | 72.2 | Plus |
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 20:55:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dere\GG16549-PA | 717 | GG16549-PA | 1..717 | 1..717 | 3422 | 88 | Plus |
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 20:55:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dgri\GH10881-PA | 728 | GH10881-PA | 1..698 | 1..700 | 2486 | 66 | Plus |
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:14:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12547-PB | 717 | CG12547-PB | 1..717 | 1..717 | 3758 | 100 | Plus |
CG12547-PA | 717 | CG12547-PA | 1..717 | 1..717 | 3758 | 100 | Plus |
CG12547-PC | 622 | CG12547-PC | 1..622 | 96..717 | 3255 | 100 | Plus |
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 20:55:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmoj\GI18254-PA | 734 | GI18254-PA | 1..697 | 1..696 | 2452 | 65.1 | Plus |
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 20:55:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dper\GL21149-PA | 595 | GL21149-PA | 1..559 | 1..565 | 2327 | 74.9 | Plus |
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 20:55:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsec\GM15465-PA | 320 | GM15465-PA | 69..320 | 466..717 | 1237 | 93.3 | Plus |
Dsec\GM15465-PA | 320 | GM15465-PA | 1..68 | 1..68 | 330 | 94.1 | Plus |
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 20:55:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\GJ17513-PA | 736 | GJ17513-PA | 1..705 | 1..703 | 2488 | 65.4 | Plus |
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 20:55:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dwil\GK23381-PA | 721 | GK23381-PA | 1..716 | 1..717 | 2347 | 61.6 | Plus |
RE33981.hyp Sequence
Translation from 52 to 2205
> RE33981.hyp
MDFNNDLSPIDILTFITDELLQAYKSSKGENEKAGTIVKFLDRWNDDISI
AKLKDLTVEFESDLEWFNVSCPLSIKGLQGKVIILDFFTYCCINCMHVLQ
ELHLLEERFPIESGVVVIGVHSPKFENERNAANILSAVQRYGISHPIVND
SRSGMWRALGIRCWPSLLILSPTGVPMMLLMGEGHGKFLQDFFSSALSYF
SRQGIIDHRGLPLKLFNDFQPASNLRFPAKIVQGPNGLYAIADTGNNRVL
VLTAGGVVQHRIGGHQPGFVDGDLTVARFNNPQGIAFLNENVLIVADTKN
HAIRQISLTNAMVETLAGTGIQGNDRIGGRLGPLQPLSSPWDVAIFRTRD
MDMSFHLDERNIPEKTIILISMAGTHQIWGYFPEGIIWWKFRKFEPCCCV
SLIGNGLEENRNNSYPQNAAFAQPSGLAIAGDVLYIADSESSSIRKASMI
DGKVMPVVGGDRNPLNLFAFGDIDGRLFSAKLQHPLGVTFNDTNNKLYVA
DTYNHKIKIIDIDSNDISTLQIKSQENTNLILNEPAGLCLDASGRNLLVA
DTNNHSIHTIDLVTLIAQPFGLDFRQIASASEIDAPQDTQKPTENNIVKA
LPLDLIKPSKIFFNLRLSPRFNFTKEAPQKWIVKTVCQSVIVNPTCGNLL
DGMCHMQVQATRPDFMCESSQIFTIEFVLNLCLSNCCLVKKITVSIKRDD
IQEEYISIHNVNIDIEQ*
RE33981.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:24:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12547-PB | 717 | CG12547-PB | 1..717 | 1..717 | 3758 | 100 | Plus |
CG12547-PA | 717 | CG12547-PA | 1..717 | 1..717 | 3758 | 100 | Plus |
CG12547-PC | 622 | CG12547-PC | 1..622 | 96..717 | 3255 | 100 | Plus |