Clone RE33981 Report

Search the DGRC for RE33981

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:339
Well:81
Vector:pFlc-1
Associated Gene/TranscriptCG12547-RA
Protein status:RE33981.pep: gold
Preliminary Size:2224
Sequenced Size:2236

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG40277 2001-12-14 Blastp of sequenced clone
CG12547 2002-01-01 Sim4 clustering to Release 2
CG12547 2008-04-29 Release 5.5 accounting
CG12547 2008-08-15 Release 5.9 accounting
CG12547 2008-12-18 5.12 accounting

Clone Sequence Records

RE33981.complete Sequence

2236 bp (2236 high quality bases) assembled on 2001-12-14

GenBank Submission: AY071316

> RE33981.complete
TGACATTAACTTTATCTGAATATATATACACAATTTTATAACTTATGCTA
GAATGGATTTTAATAATGACTTATCGCCTATTGATATTTTGACATTTATA
ACAGATGAACTGTTGCAAGCATACAAAAGCAGTAAAGGAGAAAATGAAAA
GGCTGGGACAATTGTCAAGTTTCTTGACCGATGGAATGACGATATCTCCA
TTGCAAAACTCAAGGATCTCACTGTTGAATTTGAATCAGATTTAGAGTGG
TTCAATGTAAGTTGCCCCTTATCGATAAAAGGACTGCAAGGAAAAGTTAT
CATATTAGACTTTTTCACATATTGCTGCATTAATTGTATGCATGTGCTGC
AAGAGTTGCACTTATTGGAAGAACGCTTTCCAATAGAAAGTGGTGTTGTA
GTAATCGGTGTTCACAGTCCTAAGTTTGAAAATGAACGCAATGCGGCAAA
CATTCTGTCCGCTGTACAACGATATGGAATATCACATCCCATTGTCAATG
ATTCACGATCTGGAATGTGGCGCGCTCTTGGAATTCGTTGCTGGCCTTCT
CTTTTGATTCTAAGCCCGACTGGTGTTCCGATGATGTTATTAATGGGTGA
AGGGCATGGAAAATTCCTACAGGATTTTTTTTCTTCTGCCCTATCGTATT
TTAGCCGTCAGGGTATAATTGACCATAGGGGTTTACCTTTAAAATTATTT
AATGACTTTCAACCAGCATCTAACTTGCGTTTTCCCGCAAAGATTGTTCA
AGGCCCTAATGGCCTGTATGCTATTGCTGATACGGGGAACAACAGGGTGC
TTGTGCTTACAGCAGGCGGTGTGGTACAGCACAGAATTGGAGGACACCAG
CCTGGTTTCGTGGATGGAGACCTAACAGTGGCACGGTTTAATAATCCTCA
AGGCATTGCGTTTCTTAATGAAAACGTTTTGATTGTAGCGGACACTAAAA
ACCACGCCATTCGTCAGATCTCTCTAACAAATGCAATGGTGGAAACTCTT
GCTGGCACAGGAATTCAGGGAAATGATCGAATAGGTGGACGTCTAGGACC
ATTGCAACCACTGTCGTCACCGTGGGATGTTGCCATATTTCGAACGAGGG
ACATGGATATGTCCTTTCATCTTGATGAACGTAACATACCAGAAAAAACA
ATTATCCTTATATCCATGGCAGGCACCCACCAGATTTGGGGCTATTTTCC
CGAAGGAATTATTTGGTGGAAATTTCGTAAATTTGAGCCTTGTTGCTGTG
TCTCACTAATAGGAAATGGTTTGGAAGAGAACCGTAATAATTCTTACCCA
CAGAACGCTGCATTCGCACAGCCATCTGGCCTGGCCATAGCGGGAGACGT
TTTATATATAGCTGACAGCGAAAGCTCTAGCATACGCAAAGCTTCTATGA
TAGATGGAAAGGTTATGCCTGTCGTCGGAGGAGATCGAAACCCACTTAAT
TTATTTGCATTTGGCGACATTGACGGTAGACTATTCAGCGCGAAACTCCA
ACATCCGTTAGGAGTGACTTTCAATGATACCAATAACAAACTCTATGTTG
CTGATACCTATAATCATAAAATCAAAATTATTGACATCGATTCAAATGAT
ATATCTACTCTACAAATTAAGAGCCAAGAAAATACTAACCTGATTTTAAA
CGAGCCCGCCGGACTGTGCTTGGATGCCAGCGGACGGAATTTGTTGGTAG
CTGATACCAATAACCATTCAATACATACAATAGATTTGGTAACGCTTATA
GCACAACCGTTTGGCTTAGATTTCAGACAAATAGCGTCCGCTAGTGAAAT
TGATGCGCCACAAGATACACAAAAGCCTACGGAAAATAATATAGTTAAAG
CATTGCCTCTTGATTTAATTAAACCAAGTAAAATTTTTTTTAACCTTCGG
CTTTCGCCCAGATTTAACTTTACAAAGGAAGCTCCTCAAAAATGGATAGT
GAAAACTGTATGTCAATCTGTAATAGTAAATCCAACGTGCGGAAATCTAC
TTGATGGGATGTGCCACATGCAGGTGCAGGCTACTAGGCCTGATTTTATG
TGTGAAAGCAGTCAAATATTTACCATCGAATTCGTATTAAATTTATGCCT
TTCAAATTGTTGCCTAGTAAAAAAAATCACGGTTTCTATAAAACGCGATG
ACATACAAGAAGAATATATATCCATCCACAACGTAAATATTGACATTGAA
CAATAAAAAATGTTTTGATAGAAAAAAAAAAAAAAA

RE33981.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:41:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG12547-RA 2704 CG12547-RA 39..2261 3..2225 11115 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 05:32:24
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 674709..675920 1447..236 6060 100 Minus
chr2R 21145070 chr2R 673873..674646 2221..1448 3870 100 Minus
chr2R 21145070 chr2R 675971..676207 239..3 1185 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:50:43 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 05:32:22
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 4787138..4788349 1447..236 6060 100 Minus
2R 25286936 2R 4786298..4787075 2225..1448 3890 100 Minus
2R 25286936 2R 4788400..4788636 239..3 1185 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:08:53
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 4788337..4789548 1447..236 6060 100 Minus
2R 25260384 2R 4787497..4788274 2225..1448 3890 100 Minus
2R 25260384 2R 4789599..4789835 239..3 1185 100 Minus
Blast to na_te.dros performed 2019-03-16 05:32:23
Subject Length Description Subject Range Query Range Score Percent Strand
Tabor 7345 Tabor TABOR 7345bp 6295..6355 95..37 120 68.9 Minus

RE33981.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 05:33:44 Download gff for RE33981.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 673873..674646 1448..2221 100 <- Minus
chr2R 674709..675916 240..1447 100 <- Minus
chr2R 675971..676209 1..239 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:10:50 Download gff for RE33981.complete
Subject Subject Range Query Range Percent Splice Strand
CG12547-RA 1..2154 53..2206 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:07:19 Download gff for RE33981.complete
Subject Subject Range Query Range Percent Splice Strand
CG12547-RA 1..2154 53..2206 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 08:27:44 Download gff for RE33981.complete
Subject Subject Range Query Range Percent Splice Strand
CG12547-RA 1..2154 53..2206 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:31:43 Download gff for RE33981.complete
Subject Subject Range Query Range Percent Splice Strand
CG12547-RA 1..2154 53..2206 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:04:42 Download gff for RE33981.complete
Subject Subject Range Query Range Percent Splice Strand
CG12547-RA 1..2154 53..2206 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:35:54 Download gff for RE33981.complete
Subject Subject Range Query Range Percent Splice Strand
CG12547-RA 1..2221 1..2221 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:07:19 Download gff for RE33981.complete
Subject Subject Range Query Range Percent Splice Strand
CG12547-RA 1..2221 1..2221 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:27:44 Download gff for RE33981.complete
Subject Subject Range Query Range Percent Splice Strand
CG12547-RA 5..2225 1..2221 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:31:43 Download gff for RE33981.complete
Subject Subject Range Query Range Percent Splice Strand
CG12547-RA 1..2221 1..2221 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:04:42 Download gff for RE33981.complete
Subject Subject Range Query Range Percent Splice Strand
CG12547-RA 5..2225 1..2221 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:33:44 Download gff for RE33981.complete
Subject Subject Range Query Range Percent Splice Strand
2R 4786302..4787075 1448..2221 100 <- Minus
2R 4787138..4788345 240..1447 100 <- Minus
2R 4788400..4788638 1..239 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:33:44 Download gff for RE33981.complete
Subject Subject Range Query Range Percent Splice Strand
2R 4786302..4787075 1448..2221 100 <- Minus
2R 4787138..4788345 240..1447 100 <- Minus
2R 4788400..4788638 1..239 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:33:44 Download gff for RE33981.complete
Subject Subject Range Query Range Percent Splice Strand
2R 4786302..4787075 1448..2221 100 <- Minus
2R 4787138..4788345 240..1447 100 <- Minus
2R 4788400..4788638 1..239 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:27:44 Download gff for RE33981.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 673807..674580 1448..2221 100 <- Minus
arm_2R 674643..675850 240..1447 100 <- Minus
arm_2R 675905..676143 1..239 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:08:22 Download gff for RE33981.complete
Subject Subject Range Query Range Percent Splice Strand
2R 4787501..4788274 1448..2221 100 <- Minus
2R 4788337..4789544 240..1447 100 <- Minus
2R 4789599..4789837 1..239 99   Minus

RE33981.pep Sequence

Translation from 52 to 2205

> RE33981.pep
MDFNNDLSPIDILTFITDELLQAYKSSKGENEKAGTIVKFLDRWNDDISI
AKLKDLTVEFESDLEWFNVSCPLSIKGLQGKVIILDFFTYCCINCMHVLQ
ELHLLEERFPIESGVVVIGVHSPKFENERNAANILSAVQRYGISHPIVND
SRSGMWRALGIRCWPSLLILSPTGVPMMLLMGEGHGKFLQDFFSSALSYF
SRQGIIDHRGLPLKLFNDFQPASNLRFPAKIVQGPNGLYAIADTGNNRVL
VLTAGGVVQHRIGGHQPGFVDGDLTVARFNNPQGIAFLNENVLIVADTKN
HAIRQISLTNAMVETLAGTGIQGNDRIGGRLGPLQPLSSPWDVAIFRTRD
MDMSFHLDERNIPEKTIILISMAGTHQIWGYFPEGIIWWKFRKFEPCCCV
SLIGNGLEENRNNSYPQNAAFAQPSGLAIAGDVLYIADSESSSIRKASMI
DGKVMPVVGGDRNPLNLFAFGDIDGRLFSAKLQHPLGVTFNDTNNKLYVA
DTYNHKIKIIDIDSNDISTLQIKSQENTNLILNEPAGLCLDASGRNLLVA
DTNNHSIHTIDLVTLIAQPFGLDFRQIASASEIDAPQDTQKPTENNIVKA
LPLDLIKPSKIFFNLRLSPRFNFTKEAPQKWIVKTVCQSVIVNPTCGNLL
DGMCHMQVQATRPDFMCESSQIFTIEFVLNLCLSNCCLVKKITVSIKRDD
IQEEYISIHNVNIDIEQ*

RE33981.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 20:55:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16360-PA 300 GF16360-PA 1..288 181..468 1164 72.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 20:55:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16549-PA 717 GG16549-PA 1..717 1..717 3422 88 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 20:55:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10881-PA 728 GH10881-PA 1..698 1..700 2486 66 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:14:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG12547-PB 717 CG12547-PB 1..717 1..717 3758 100 Plus
CG12547-PA 717 CG12547-PA 1..717 1..717 3758 100 Plus
CG12547-PC 622 CG12547-PC 1..622 96..717 3255 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 20:55:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18254-PA 734 GI18254-PA 1..697 1..696 2452 65.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 20:55:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21149-PA 595 GL21149-PA 1..559 1..565 2327 74.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 20:55:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15465-PA 320 GM15465-PA 69..320 466..717 1237 93.3 Plus
Dsec\GM15465-PA 320 GM15465-PA 1..68 1..68 330 94.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 20:55:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17513-PA 736 GJ17513-PA 1..705 1..703 2488 65.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 20:55:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23381-PA 721 GK23381-PA 1..716 1..717 2347 61.6 Plus

RE33981.hyp Sequence

Translation from 52 to 2205

> RE33981.hyp
MDFNNDLSPIDILTFITDELLQAYKSSKGENEKAGTIVKFLDRWNDDISI
AKLKDLTVEFESDLEWFNVSCPLSIKGLQGKVIILDFFTYCCINCMHVLQ
ELHLLEERFPIESGVVVIGVHSPKFENERNAANILSAVQRYGISHPIVND
SRSGMWRALGIRCWPSLLILSPTGVPMMLLMGEGHGKFLQDFFSSALSYF
SRQGIIDHRGLPLKLFNDFQPASNLRFPAKIVQGPNGLYAIADTGNNRVL
VLTAGGVVQHRIGGHQPGFVDGDLTVARFNNPQGIAFLNENVLIVADTKN
HAIRQISLTNAMVETLAGTGIQGNDRIGGRLGPLQPLSSPWDVAIFRTRD
MDMSFHLDERNIPEKTIILISMAGTHQIWGYFPEGIIWWKFRKFEPCCCV
SLIGNGLEENRNNSYPQNAAFAQPSGLAIAGDVLYIADSESSSIRKASMI
DGKVMPVVGGDRNPLNLFAFGDIDGRLFSAKLQHPLGVTFNDTNNKLYVA
DTYNHKIKIIDIDSNDISTLQIKSQENTNLILNEPAGLCLDASGRNLLVA
DTNNHSIHTIDLVTLIAQPFGLDFRQIASASEIDAPQDTQKPTENNIVKA
LPLDLIKPSKIFFNLRLSPRFNFTKEAPQKWIVKTVCQSVIVNPTCGNLL
DGMCHMQVQATRPDFMCESSQIFTIEFVLNLCLSNCCLVKKITVSIKRDD
IQEEYISIHNVNIDIEQ*

RE33981.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:24:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG12547-PB 717 CG12547-PB 1..717 1..717 3758 100 Plus
CG12547-PA 717 CG12547-PA 1..717 1..717 3758 100 Plus
CG12547-PC 622 CG12547-PC 1..622 96..717 3255 100 Plus