BDGP Sequence Production Resources |
Search the DGRC for RE34039
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 340 |
Well: | 39 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG9586-RB |
Protein status: | RE34039.pep: gold |
Preliminary Size: | 944 |
Sequenced Size: | 966 |
Gene | Date | Evidence |
---|---|---|
CG9586 | 2001-12-14 | Blastp of sequenced clone |
CG9586 | 2002-01-01 | Sim4 clustering to Release 2 |
CG9586 | 2003-01-01 | Sim4 clustering to Release 3 |
CG9586 | 2008-04-29 | Release 5.5 accounting |
CG9586 | 2008-08-15 | Release 5.9 accounting |
CG9586 | 2008-12-18 | 5.12 accounting |
966 bp (966 high quality bases) assembled on 2001-12-14
GenBank Submission: AY071317
> RE34039.complete GCTCGCCAACACTGCGCCACATGCTCCACAAATTTTTTTGTTGCCTTTTG CGGCTGATTTGTCACTGCCAGAGTTTATTCCGCAAATAAAATCCTCTATA CATGATATTTAAATCAAATACCGAGTAACCATGAGCGCCACGGATGACTT CCAGAGCTGGCTCAACGAGCAGCTGCGCAAATTGAACACCGACGAGAACG TTTTCGGTTCGTATATTATTGGAATTTTGGAGGGCGACGAAACGACAGAT GAAAAAACCGAGGCTCTCGAGGGAATTCTCAGCGAAACAGGTTCCGCCAA CATTGACGAACTGGTGGCCACCATACTACAAAAGTGGCTACAGAGCCATC CCAGCGCCGATGATCCGCCGAAAAAAGGTCTGGATATCGATGTGAATGCC CAGTTGGCCAAGTTGCTGGAGCAACAGAAGCTGCAACCCGCCGTAAACAA GGAGCGTGAATACACCGAAGAGGAGCGTCGCATCAAGCAGCAGATTCTAG CTCAATACTCCCAGACTGCCGTTGCCAACGAGGACGACGAGAATTCCGAG GCGGAAAGCGAGGATGACAGTGGAACGCTCACCAAGAATACCAACAAATC GGATGTCCAGGCGCTAGCCAAGGAAAAGCGGGAGCAGGCCCGAATGGATA GTGCGGCCAAAAAGCAAAAGGACAAAGAGGATCGGGAAAAGCAAAAGCAA CTGCGCGAGGAAAAGAAGGAGAAACGCAAAACCGTCAAAGGCGAACGGCG TCGATAACCGTCCCCAAGCGAATATTTTTAGACTCTTTCTATTAAAAACA ACAAACAACAAATCTGTACAAAGTGCATTTCGCTTGAATGTTTGCATGTT TGCCTAAAGCGAAGTAAACTTTGAAGAGATCTACCGAACTGTTGAATATA AATGTATTAAAATTGAAACGCCAAGATTTTAATTTGAAAAAAAAAAAAAA GAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2L | 23010047 | chr2L | 9164328..9164745 | 937..512 | 1960 | 97.9 | Minus |
chr2L | 23010047 | chr2L | 9165123..9165414 | 292..1 | 1445 | 99.7 | Minus |
chr2L | 23010047 | chr2L | 9164843..9165064 | 514..293 | 1110 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 9165420..9165845 | 937..512 | 2130 | 100 | Minus |
2L | 23513712 | 2L | 9166223..9166514 | 292..1 | 1445 | 99.7 | Minus |
2L | 23513712 | 2L | 9165943..9166164 | 514..293 | 1110 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 9165420..9165845 | 937..512 | 2130 | 100 | Minus |
2L | 23513712 | 2L | 9166223..9166514 | 292..1 | 1445 | 99.6 | Minus |
2L | 23513712 | 2L | 9165943..9166164 | 514..293 | 1110 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dkoe\Gandalf | 979 | Dkoe\Gandalf DK29466 979bp Derived from U29466 (Rel. 63, Last updated, Version 5). | 754..888 | 950..818 | 110 | 57.4 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 9164329..9164742 | 515..936 | 97 | <- | Minus |
chr2L | 9164843..9165064 | 293..514 | 100 | <- | Minus |
chr2L | 9165123..9165414 | 1..292 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9586-RB | 1..627 | 131..757 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9586-RB | 1..627 | 131..757 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9586-RB | 1..627 | 131..757 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9586-RB | 1..627 | 131..757 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9586-RB | 1..627 | 131..757 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9586-RB | 1..867 | 70..936 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9586-RB | 30..965 | 1..936 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9586-RB | 1..936 | 1..936 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9586-RB | 1..867 | 70..936 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9586-RB | 1..936 | 1..936 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 9165421..9165842 | 515..936 | 100 | <- | Minus |
2L | 9165943..9166164 | 293..514 | 100 | <- | Minus |
2L | 9166223..9166514 | 1..292 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 9165421..9165842 | 515..936 | 100 | <- | Minus |
2L | 9165943..9166164 | 293..514 | 100 | <- | Minus |
2L | 9166223..9166514 | 1..292 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 9165421..9165842 | 515..936 | 100 | <- | Minus |
2L | 9165943..9166164 | 293..514 | 100 | <- | Minus |
2L | 9166223..9166514 | 1..292 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 9165421..9165842 | 515..936 | 100 | <- | Minus |
arm_2L | 9165943..9166164 | 293..514 | 100 | <- | Minus |
arm_2L | 9166223..9166514 | 1..292 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 9165421..9165842 | 515..936 | 100 | <- | Minus |
2L | 9165943..9166164 | 293..514 | 100 | <- | Minus |
2L | 9166223..9166514 | 1..292 | 99 | Minus |
Translation from 130 to 756
> RE34039.hyp MSATDDFQSWLNEQLRKLNTDENVFGSYIIGILEGDETTDEKTEALEGIL SETGSANIDELVATILQKWLQSHPSADDPPKKGLDIDVNAQLAKLLEQQK LQPAVNKEREYTEEERRIKQQILAQYSQTAVANEDDENSEAESEDDSGTL TKNTNKSDVQALAKEKREQARMDSAAKKQKDKEDREKQKQLREEKKEKRK TVKGERRR*
Translation from 130 to 756
> RE34039.pep MSATDDFQSWLNEQLRKLNTDENVFGSYIIGILEGDETTDEKTEALEGIL SETGSANIDELVATILQKWLQSHPSADDPPKKGLDIDVNAQLAKLLEQQK LQPAVNKEREYTEEERRIKQQILAQYSQTAVANEDDENSEAESEDDSGTL TKNTNKSDVQALAKEKREQARMDSAAKKQKDKEDREKQKQLREEKKEKRK TVKGERRR*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF22060-PA | 208 | GF22060-PA | 1..208 | 1..208 | 874 | 86.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG24037-PA | 208 | GG24037-PA | 1..208 | 1..208 | 878 | 92.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH13644-PA | 206 | GH13644-PA | 3..206 | 6..208 | 787 | 78.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG9586-PB | 208 | CG9586-PB | 1..208 | 1..208 | 1043 | 100 | Plus |
CG9586-PC | 218 | CG9586-PC | 1..218 | 1..208 | 1022 | 95.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI11923-PA | 207 | GI11923-PA | 3..207 | 6..208 | 830 | 81.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL25537-PA | 208 | GL25537-PA | 1..208 | 1..208 | 826 | 82.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA21893-PA | 208 | GA21893-PA | 1..208 | 1..208 | 826 | 82.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM12539-PA | 208 | GM12539-PA | 1..208 | 1..208 | 1032 | 96.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD22364-PA | 208 | GD22364-PA | 1..208 | 1..208 | 1041 | 97.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ14035-PA | 207 | GJ14035-PA | 3..207 | 6..208 | 824 | 80.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK15064-PA | 210 | GK15064-PA | 1..210 | 1..208 | 818 | 82.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE10599-PA | 208 | GE10599-PA | 1..208 | 1..208 | 883 | 94.2 | Plus |