Clone RE34144 Report

Search the DGRC for RE34144

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:341
Well:44
Vector:pFlc-1
Associated Gene/TranscriptUbc7-RA
Protein status:RE34144.pep: gold
Preliminary Size:743
Sequenced Size:1449

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4443 2001-12-14 Blastp of sequenced clone
CG4443 2002-01-01 Sim4 clustering to Release 2
CG4443 2003-01-01 Sim4 clustering to Release 3
crl 2008-04-29 Release 5.5 accounting
crl 2008-08-15 Release 5.9 accounting
crl 2008-12-18 5.12 accounting

Clone Sequence Records

RE34144.complete Sequence

1449 bp (1449 high quality bases) assembled on 2001-12-14

GenBank Submission: AY071319

> RE34144.complete
GGAATCGATTACTCTTGTTAAATTCACTCAGTACAGATATATTTTTATAG
AAAGCCACTCGATTCATTCGATATAAATAAACACGGAACACCGTTTGTGT
TTATTATATTACGACGTGTCTGTATTTTGACCCGTGCCCGAGGATCTGGA
AAGTTCGCGATTGCCGCCAAAACAAGCAAGGACCCCATTCGGGTGTAGCA
GGTGCAGGAGCAGGTGGACAGGAAACGGAGAAGCAGCTGAAGGAAACTCA
AAGGAAGTGGTCACAGTGGGGAGAAGGAGCCCGTGAACTGAACCATCATC
ATTACCATCGAGCGCATTTAGGATGGCTGGGTCCGCACTGCGCCGCCTGA
TGGCGGAATACAAACAGTTAACACTTGACCCGCCCGAGGGCATTGTGGCC
GGCCCCATCAGCGAGGACAACTTCTTCGAGTGGGAGGCACTGATTGCCGG
ACCTGAGGGCACTTGTTTCGAGGGCGGAGTGTTTCCTGCCCGGCTCATCT
TTCCGACCGACTATCCTCTGAGTCCGCCTAAAATGAAATTCACTTGTGAC
ATGTTCCATCCCAACATATTCGCCGACGGGCGGGTCTGCATATCAATACT
ACACGCACCCGGCGACGATCCCATGGGCTACGAGCTATCCGCGGAGCGCT
GGAGTCCTGTCCAGAGCGTGGAGAAGATTTTGCTTAGTGTGGTCAGCATG
CTGGCGGAACCCAACGATGAGAGCGGCGCTAATGTGGATGCAGCAATTAT
GTGGCGCGAACAGAGGGATGAGTTCAACGCCATCGCCCGACGGCTGGTGC
GCAAAACTCTTGGTTTACCGGCGTAAATGGATCATGTGCGTCACCGTCAA
TACTTTCTACCCTGAACAACACGATTCCAACAACTCGCTAACCCATAGTT
TTCTCAAAAATCCCTCGTTGAGCTAACCGACACAAGTTTCAAATTAGCAA
AAATGAAGAACCTAACGTCAAAATCGACTAACTCAAGTTTATCTAGCACA
CTGACTGCCTCACCGGACTTAACTGGAGGGCCTATTACCTGAAGTACATC
ACTGGTAGTTGGACACGAGGCCAGGTGAAGGCGGAGTGAGAAGTTGGCAA
GAAAAGTGAAAATTCTAATAATTTCTATTATTAAAGGTTTATTTTTTTTT
ATATATTTTCACTAGATATAATTTGTATTGATGCTTTATAAAGATGCTGT
TTTGAAAAGTTAAATAGAAATTACGATAATTCAAGTGCAAGGGCAATGTA
TTCGAAGTGATTGAGGCGTTTGATTTGCATTATGCTTTATGTTTGGTTTA
TATAGTCATTACACACTTAATTCGACTGATCATTAACTGAAATCCAACAT
GAAATTGTCCTATGTACTCATAAAATACTACACAATTGTAAACGTTTTCA
TTCGATTAAGTAAATTGATTAATGTTCACTTTGAAAAAAAAAAAAAAAA

RE34144.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:40:00
Subject Length Description Subject Range Query Range Score Percent Strand
crl-RA 1452 crl-RA 2..1434 2..1434 7165 100 Plus
crl.a 2008 crl.a 2..1434 2..1434 7165 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 04:56:25
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 16484359..16485084 707..1433 3570 99.7 Plus
chrX 22417052 chrX 16483349..16483712 2..365 1820 100 Plus
chrX 22417052 chrX 16483940..16484199 448..707 1285 99.6 Plus
chrX 22417052 chrX 16483775..16483856 366..447 410 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:50:55 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 04:56:23
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16594690..16595417 707..1434 3640 100 Plus
X 23542271 X 16593680..16594043 2..365 1820 100 Plus
X 23542271 X 16594271..16594530 448..707 1300 100 Plus
X 23542271 X 16594106..16594187 366..447 410 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:07:09
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 16602788..16603515 707..1434 3640 100 Plus
X 23527363 X 16601778..16602141 2..365 1820 100 Plus
X 23527363 X 16602369..16602628 448..707 1300 100 Plus
X 23527363 X 16602204..16602285 366..447 410 100 Plus
Blast to na_te.dros performed on 2019-03-16 04:56:23 has no hits.

RE34144.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 04:57:21 Download gff for RE34144.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 16483775..16483856 366..447 100 -> Plus
chrX 16483348..16483712 1..365 99 -> Plus
chrX 16483940..16484199 448..707 99 -> Plus
chrX 16484360..16485084 708..1433 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:11:03 Download gff for RE34144.complete
Subject Subject Range Query Range Percent Splice Strand
crl-RA 1..504 323..826 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:04:31 Download gff for RE34144.complete
Subject Subject Range Query Range Percent Splice Strand
crl-RA 1..504 323..826 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:45:47 Download gff for RE34144.complete
Subject Subject Range Query Range Percent Splice Strand
crl-RA 1..504 323..826 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:29:12 Download gff for RE34144.complete
Subject Subject Range Query Range Percent Splice Strand
crl-RA 1..504 323..826 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:54:29 Download gff for RE34144.complete
Subject Subject Range Query Range Percent Splice Strand
Ubc7-RA 1..504 323..826 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:32:03 Download gff for RE34144.complete
Subject Subject Range Query Range Percent Splice Strand
crl-RA 2..1433 2..1433 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:04:31 Download gff for RE34144.complete
Subject Subject Range Query Range Percent Splice Strand
crl-RA 2..1433 2..1433 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:45:47 Download gff for RE34144.complete
Subject Subject Range Query Range Percent Splice Strand
crl-RA 3..1435 1..1433 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:29:12 Download gff for RE34144.complete
Subject Subject Range Query Range Percent Splice Strand
crl-RA 2..1433 2..1433 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:54:29 Download gff for RE34144.complete
Subject Subject Range Query Range Percent Splice Strand
Ubc7-RA 3..1435 1..1433 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:57:21 Download gff for RE34144.complete
Subject Subject Range Query Range Percent Splice Strand
X 16593679..16594043 1..365 99 -> Plus
X 16594106..16594187 366..447 100 -> Plus
X 16594271..16594530 448..707 100 -> Plus
X 16594691..16595416 708..1433 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:57:21 Download gff for RE34144.complete
Subject Subject Range Query Range Percent Splice Strand
X 16593679..16594043 1..365 99 -> Plus
X 16594106..16594187 366..447 100 -> Plus
X 16594271..16594530 448..707 100 -> Plus
X 16594691..16595416 708..1433 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:57:21 Download gff for RE34144.complete
Subject Subject Range Query Range Percent Splice Strand
X 16593679..16594043 1..365 99 -> Plus
X 16594106..16594187 366..447 100 -> Plus
X 16594271..16594530 448..707 100 -> Plus
X 16594691..16595416 708..1433 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:45:47 Download gff for RE34144.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 16487712..16488076 1..365 99 -> Plus
arm_X 16488139..16488220 366..447 100 -> Plus
arm_X 16488304..16488563 448..707 100 -> Plus
arm_X 16488724..16489449 708..1433 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:05:11 Download gff for RE34144.complete
Subject Subject Range Query Range Percent Splice Strand
X 16601777..16602141 1..365 99 -> Plus
X 16602204..16602285 366..447 100 -> Plus
X 16602369..16602628 448..707 100 -> Plus
X 16602789..16603514 708..1433 100   Plus

RE34144.pep Sequence

Translation from 322 to 825

> RE34144.pep
MAGSALRRLMAEYKQLTLDPPEGIVAGPISEDNFFEWEALIAGPEGTCFE
GGVFPARLIFPTDYPLSPPKMKFTCDMFHPNIFADGRVCISILHAPGDDP
MGYELSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDAAIMWREQRDE
FNAIARRLVRKTLGLPA*

RE34144.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 20:33:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21159-PA 167 GF21159-PA 1..167 1..167 861 97 Plus
Dana\GF18145-PA 167 GF18145-PA 5..163 1..162 460 54.9 Plus
Dana\GF21720-PA 311 GF21720-PA 5..148 2..145 373 49.3 Plus
Dana\GF19999-PA 113 GF19999-PA 2..108 56..162 348 60.7 Plus
Dana\GF18131-PA 147 GF18131-PA 2..144 5..161 308 37.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 20:33:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19056-PA 167 GG19056-PA 1..166 1..166 876 99.4 Plus
Dere\GG16305-PA 168 GG16305-PA 10..163 9..162 458 55.8 Plus
Dere\GG17023-PA 168 GG17023-PA 10..163 9..162 453 55.8 Plus
Dere\GG21088-PA 147 GG21088-PA 2..144 5..161 308 37.6 Plus
Dere\GG11277-PA 151 GG11277-PA 1..149 1..163 308 37.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 20:33:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24823-PA 167 GH24823-PA 1..167 1..167 836 93.4 Plus
Dgri\GH22344-PA 170 GH22344-PA 18..165 15..162 455 57.4 Plus
Dgri\GH14044-PA 167 GH14044-PA 5..163 1..162 447 53.7 Plus
Dgri\GH14479-PA 324 GH14479-PA 44..186 7..149 405 51.7 Plus
Dgri\GH14086-PA 147 GH14086-PA 2..144 5..161 308 37.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:55:26
Subject Length Description Subject Range Query Range Score Percent Strand
Ubc7-PB 167 CG4443-PB 1..167 1..167 882 100 Plus
Ubc7-PA 167 CG4443-PA 1..167 1..167 882 100 Plus
CG40045-PA 168 CG40045-PA 10..163 9..162 451 55.8 Plus
CG40045-PD 167 CG40045-PD 10..162 9..162 437 55.8 Plus
Ubc87F-PA 168 CG9602-PA 10..163 9..162 437 55.2 Plus
CG7656-PF 317 CG7656-PF 38..197 2..161 415 49.4 Plus
CG7656-PA 317 CG7656-PA 38..197 2..161 415 49.4 Plus
CG7656-PE 319 CG7656-PE 38..185 2..149 411 52 Plus
CG7656-PD 319 CG7656-PD 38..185 2..149 411 52 Plus
CG40045-PC 132 CG40045-PC 15..127 50..162 365 61.1 Plus
eff-PC 147 CG7425-PC 2..144 5..161 306 37.6 Plus
eff-PB 147 CG7425-PB 2..144 5..161 306 37.6 Plus
eff-PA 147 CG7425-PA 2..144 5..161 306 37.6 Plus
Ubc6-PC 151 CG2013-PC 1..148 1..162 299 37.7 Plus
Ubc6-PA 151 CG2013-PA 1..148 1..162 299 37.7 Plus
CG40045-PB 97 CG40045-PB 1..92 71..162 290 60.9 Plus
Ubc2-PD 232 CG6720-PD 85..224 3..156 260 35.1 Plus
Ubc2-PC 232 CG6720-PC 85..224 3..156 260 35.1 Plus
Ubc2-PB 232 CG6720-PB 85..224 3..156 260 35.1 Plus
Ubc2-PA 232 CG6720-PA 85..224 3..156 260 35.1 Plus
lwr-PD 159 CG3018-PD 1..153 1..160 258 36 Plus
lwr-PC 159 CG3018-PC 1..153 1..160 258 36 Plus
lwr-PB 159 CG3018-PB 1..153 1..160 258 36 Plus
lwr-PA 159 CG3018-PA 1..153 1..160 258 36 Plus
vih-PA 178 CG10682-PA 35..163 7..149 253 37.8 Plus
CG10862-PA 354 CG10862-PA 210..351 6..161 249 34.6 Plus
CG5440-PC 169 CG5440-PC 19..159 2..156 248 33.5 Plus
CG5440-PB 169 CG5440-PB 19..159 2..156 248 33.5 Plus
CG8188-PD 209 CG8188-PD 11..154 1..158 243 32.9 Plus
CG8188-PC 209 CG8188-PC 11..154 1..158 243 32.9 Plus
CG8188-PB 209 CG8188-PB 11..154 1..158 243 32.9 Plus
CG8188-PA 209 CG8188-PA 11..154 1..158 243 32.9 Plus
ben-PE 151 CG18319-PE 6..146 7..161 242 34.2 Plus
ben-PD 151 CG18319-PD 6..146 7..161 242 34.2 Plus
ben-PB 151 CG18319-PB 6..146 7..161 242 34.2 Plus
ben-PC 151 CG18319-PC 6..146 7..161 242 34.2 Plus
ben-PA 151 CG18319-PA 6..146 7..161 242 34.2 Plus
CG3473-PB 151 CG3473-PB 7..146 8..161 233 33.8 Plus
CG3473-PA 151 CG3473-PA 7..146 8..161 233 33.8 Plus
CG2574-PA 239 CG2574-PA 66..200 8..156 211 30.2 Plus
morgue-PA 491 CG15437-PA 334..476 3..156 199 32.1 Plus
CG7220-PC 154 CG7220-PC 9..120 7..128 177 35.2 Plus
CG7220-PA 154 CG7220-PA 9..120 7..128 177 35.2 Plus
CG7220-PD 154 CG7220-PD 9..120 7..128 177 35.2 Plus
CG7220-PE 190 CG7220-PE 45..156 7..128 177 35.2 Plus
CG7220-PF 190 CG7220-PF 45..156 7..128 177 35.2 Plus
CG7220-PB 190 CG7220-PB 45..156 7..128 177 35.2 Plus
Ubc10-PA 154 CG5788-PA 2..146 4..161 176 26.6 Plus
Ubc4-PC 199 CG8284-PC 1..156 1..166 172 30.6 Plus
Ubc4-PB 199 CG8284-PB 1..156 1..166 172 30.6 Plus
Ubc4-PA 199 CG8284-PA 1..156 1..166 172 30.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 20:33:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16154-PA 167 GI16154-PA 1..167 1..167 848 95.8 Plus
Dmoj\GI24418-PA 167 GI24418-PA 5..163 1..162 462 54.9 Plus
Dmoj\GI23981-PA 168 GI23981-PA 10..163 9..162 455 55.8 Plus
Dmoj\GI13630-PA 321 GI13630-PA 41..184 6..149 411 52.1 Plus
Dmoj\GI10619-PA 147 GI10619-PA 2..144 5..161 308 37.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 20:33:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18350-PA 167 GL18350-PA 1..165 1..165 848 95.8 Plus
Dper\GL12289-PA 170 GL12289-PA 18..165 15..162 450 57.4 Plus
Dper\GL24447-PA 167 GL24447-PA 5..163 1..162 439 54.3 Plus
Dper\GL23670-PA 147 GL23670-PA 2..144 5..161 308 37.6 Plus
Dper\GL22213-PA 151 GL22213-PA 1..149 1..163 308 37.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 20:33:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18185-PA 167 GA18185-PA 1..165 1..165 848 95.8 Plus
Dpse\GA26259-PA 170 GA26259-PA 18..165 15..162 451 57.4 Plus
Dpse\GA21906-PA 167 GA21906-PA 5..163 1..162 439 54.3 Plus
Dpse\GA26693-PA 147 GA26693-PA 2..144 5..161 308 37.6 Plus
Dpse\GA15184-PA 151 GA15184-PA 1..149 1..163 308 37.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 20:33:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23423-PA 168 GM23423-PA 10..163 9..162 458 55.8 Plus
Dsec\GM25907-PA 168 GM25907-PA 10..163 9..162 452 55.8 Plus
Dsec\GM13446-PA 66 GM13446-PA 1..63 71..133 338 100 Plus
Dsec\GM25828-PA 147 GM25828-PA 2..144 5..161 308 37.6 Plus
Dsec\GM10669-PA 151 GM10669-PA 1..149 1..163 308 37.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 20:33:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24840-PA 167 GD24840-PA 1..167 1..167 861 98.2 Plus
Dsim\GD11958-PA 168 GD11958-PA 10..163 9..162 458 55.8 Plus
Dsim\GD20475-PA 168 GD20475-PA 10..163 9..162 452 55.8 Plus
Dsim\GD20402-PA 147 GD20402-PA 2..144 5..161 308 37.6 Plus
Dsim\GD19645-PA 151 GD19645-PA 1..149 1..163 308 37.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 20:33:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16432-PA 167 GJ16432-PA 1..167 1..167 846 95.2 Plus
Dvir\GJ14277-PA 220 GJ14277-PA 58..216 1..162 464 54.9 Plus
Dvir\GJ11187-PA 168 GJ11187-PA 10..163 9..162 458 55.8 Plus
Dvir\GJ13967-PA 318 GJ13967-PA 41..184 6..149 406 51.4 Plus
Dvir\GJ22971-PA 147 GJ22971-PA 2..144 5..161 308 37.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 20:33:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16076-PA 167 GK16076-PA 1..167 1..167 852 95.8 Plus
Dwil\GK12909-PA 168 GK12909-PA 10..163 9..162 456 55.8 Plus
Dwil\GK13059-PA 167 GK13059-PA 5..163 1..162 451 54.3 Plus
Dwil\GK20435-PA 322 GK20435-PA 43..187 5..149 413 52.4 Plus
Dwil\GK11688-PA 147 GK11688-PA 2..144 5..161 308 37.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 20:33:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\crl-PA 167 GE17278-PA 1..166 1..166 876 99.4 Plus
Dyak\GE15167-PA 168 GE15167-PA 10..163 9..162 458 55.8 Plus
Dyak\GE24416-PA 168 GE24416-PA 5..163 1..162 452 54.3 Plus
Dyak\eff-PA 147 GE26430-PA 2..144 5..161 308 37.6 Plus
Dyak\GE25319-PA 151 GE25319-PA 1..149 1..163 308 37.4 Plus

RE34144.hyp Sequence

Translation from 322 to 825

> RE34144.hyp
MAGSALRRLMAEYKQLTLDPPEGIVAGPISEDNFFEWEALIAGPEGTCFE
GGVFPARLIFPTDYPLSPPKMKFTCDMFHPNIFADGRVCISILHAPGDDP
MGYELSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDAAIMWREQRDE
FNAIARRLVRKTLGLPA*

RE34144.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:36:02
Subject Length Description Subject Range Query Range Score Percent Strand
Ubc7-PB 167 CG4443-PB 1..167 1..167 882 100 Plus
Ubc7-PA 167 CG4443-PA 1..167 1..167 882 100 Plus
CG40045-PA 168 CG40045-PA 10..163 9..162 451 55.8 Plus
CG40045-PD 167 CG40045-PD 10..162 9..162 437 55.8 Plus
Ubc87F-PA 168 CG9602-PA 10..163 9..162 437 55.2 Plus