Clone RE34180 Report

Search the DGRC for RE34180

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:341
Well:80
Vector:pFlc-1
Associated Gene/TranscriptCG13667-RA
Protein status:RE34180.pep: gold
Sequenced Size:1855

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG13667 2003-01-01 Sim4 clustering to Release 3
CG13667 2008-04-29 Release 5.5 accounting
CG13667 2008-08-15 Release 5.9 accounting
CG13667 2008-12-18 5.12 accounting

Clone Sequence Records

RE34180.complete Sequence

1855 bp (1855 high quality bases) assembled on 2004-12-16

GenBank Submission: BT021286

> RE34180.complete
ATTCGAAAATTCTGAATTGTAGAAAATGCGGCTGTTAGTGCTCTACGGGA
GTCAAACCGGCACCGCCCAGGATGTGGCGGAACAGATCTGGCGGGAGTCG
CATCAACTGGGCTTCCAAGGACCCGTGCTGCCTTTCGACGAGTACGATAT
GACCAAACTTATTGAGGAGCGCCTCGTGGTCTTTGTGGTGGCCACTACGG
GTGACGGAGTGGAGCCGGATAACATGAAGCTGGCCTGGCGATTTCTCCTG
AAGCGCAGCTTACCCGCCCAATCCTTGCAAGGCATGCAGTTCGCGTGCCT
TGGACTCGGGGACTCCAGCTATCCGAAGTTTAACTATGCCGCCAAGAAAC
TGAGCAAGAGACTACAGAATCTGGGAGCAAATAGCGTGTGTCCAGTGGGT
CTGTGTGATGATCAGCATGACTACGGGCATTTGGGTGTATCCCTTAGCTG
GACAAAGGATTTGTGGACAGCTCTGAAAGGCATCTCTGGTCTTGACGAAA
GTAAACTTAGCAACAGCCACCAAACTACTGTAAAGTGGTCAGTAAAGGAG
CTGCCTAAGGATTCCCAAATTGCTCCGATGGACAATCTGCTCTGGAGCCA
AAAACAAACTGCCCACTCTTTCAAAATTCTGGATAACCAAAGAACAACGG
CGGTGGATCACTTTCAGGATGTACGCTTCCTAAGGCTGCAGTGTCAGACT
GAAGATCTTAGCTGGGAACCCGGCGATGTACTCGATGTTCAGCCGCAAAA
CAGCGATGAAGCTGTCCAAACATTCTTCGACCTTATTCGCGAACACAGCC
TGAACTTCGATGAGAGCACTATAGTGGAGGTATCCAGTGCACATCAGGAT
ATGCCCCTTCCCATAGCCTATTCCAATCCCTTAAGCCTCCTCCAGGCCGC
CAAATTCGTTTGGGACTTGAGTGCTAAGCCACGGCAACGTTTCCTCGAGG
TACTAGCACAGAATTGCTGCGATGAAATGGAAAAGGAAAAGCTGCTCGAA
TTCTCCTCCGCGGAGGGAATTGATGACTTAGTGGCTTATGTGAACAGGCC
GCGTCGTAATCTTTTGGAGGTTCTGGAGGATTTCCGGCACGCCACCTCTA
GCTTAACTCTGCAACAGCTCTTTGAGATGATGCCACTGATCCAGCCACGC
AGTTTTTCCATTGCCTCGGATGTTTCCGCCTTAAGTTTGGACTTGCTGGT
GGCCGTTGTGGAGTACAAAACCATAATGCATACTCCACGTCTGGGCTTAT
GCTCCAACTGGCTGAAGACTTTGAAATCGGGTACTGAGTTGAGCGGAGTT
GTCAAAAGAGGAACCATGGTCTGGCCAAAAGACTTAAGTATACCACTTAT
AATGGTAGGACCTGGCACAGGCATCGCTCCATTCCGTAGCATTATCCAAA
ACCGATTGTATGCTCAATCAAAAGGTGCCACAATTGGTCCCTTGGTTGTT
TTCTTTGGCTGTCGGAACAAAGCTGCCGATTTCCACTTTGGAAATGACTT
CTCCACCTGGACCGATGCGAAACAGGTAGAGGCCCATACTGCCTTCTCGA
GGGATCAGGATCAGAAGGTCTATGTCCAGCATTTAATCGCCAAGAATGGT
GCTCATCTGGCGAGGCTTATAAAAGACCTGAATGCCTATATCTACGTGGC
TGGCAACTCCAATAATATGCCAAAGTCTGTCAAAGAGGCCTTTATCGAGA
TACTAGATGGCGATGCCGATTACGTGGAACTAATGATAAAACAGCGACGA
TATCAGGAGGAAACCTGGGCGTAACACCGTATTTATTTGCGTATAGTTCC
TATTTGTACAGTTTTGGACGGAAATTATATATTTGCACACAAAAAAAAAA
AAAAA

RE34180.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:51:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG13667-RA 1924 CG13667-RA 84..1924 1..1841 9205 100 Plus
CG13667-RB 1902 CG13667-RB 84..1902 23..1841 9095 100 Plus
Oseg1-RA 3846 Oseg1-RA 3759..3846 1841..1754 440 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 04:56:29
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 8397521..8399360 1..1840 9005 99.3 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:50:57 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 04:56:28
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8405515..8407355 1..1841 9205 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:40:16
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 8398615..8400455 1..1841 9205 100 Plus
Blast to na_te.dros performed on 2019-03-16 04:56:28 has no hits.

RE34180.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 04:57:24 Download gff for RE34180.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 8397521..8399360 1..1840 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:11:05 Download gff for RE34180.complete
Subject Subject Range Query Range Percent Splice Strand
CG13667-RB 1..1749 26..1774 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:22:16 Download gff for RE34180.complete
Subject Subject Range Query Range Percent Splice Strand
CG13667-RB 1..1749 26..1774 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:45:53 Download gff for RE34180.complete
Subject Subject Range Query Range Percent Splice Strand
CG13667-RA 1..1749 26..1774 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:06:10 Download gff for RE34180.complete
Subject Subject Range Query Range Percent Splice Strand
CG13667-RB 1..1749 26..1774 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:54:36 Download gff for RE34180.complete
Subject Subject Range Query Range Percent Splice Strand
CG13667-RA 1..1749 26..1774 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:23:26 Download gff for RE34180.complete
Subject Subject Range Query Range Percent Splice Strand
CG13667-RA 84..1923 1..1840 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:22:16 Download gff for RE34180.complete
Subject Subject Range Query Range Percent Splice Strand
CG13667-RA 84..1923 1..1840 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:45:53 Download gff for RE34180.complete
Subject Subject Range Query Range Percent Splice Strand
CG13667-RA 41..1880 1..1840 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:06:11 Download gff for RE34180.complete
Subject Subject Range Query Range Percent Splice Strand
CG13667-RA 84..1923 1..1840 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:54:36 Download gff for RE34180.complete
Subject Subject Range Query Range Percent Splice Strand
CG13667-RA 41..1880 1..1840 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:57:24 Download gff for RE34180.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8405515..8407354 1..1840 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:57:24 Download gff for RE34180.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8405515..8407354 1..1840 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:57:24 Download gff for RE34180.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8405515..8407354 1..1840 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:45:53 Download gff for RE34180.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8398615..8400454 1..1840 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:42:37 Download gff for RE34180.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8398615..8400454 1..1840 100   Plus

RE34180.pep Sequence

Translation from 25 to 1773

> RE34180.pep
MRLLVLYGSQTGTAQDVAEQIWRESHQLGFQGPVLPFDEYDMTKLIEERL
VVFVVATTGDGVEPDNMKLAWRFLLKRSLPAQSLQGMQFACLGLGDSSYP
KFNYAAKKLSKRLQNLGANSVCPVGLCDDQHDYGHLGVSLSWTKDLWTAL
KGISGLDESKLSNSHQTTVKWSVKELPKDSQIAPMDNLLWSQKQTAHSFK
ILDNQRTTAVDHFQDVRFLRLQCQTEDLSWEPGDVLDVQPQNSDEAVQTF
FDLIREHSLNFDESTIVEVSSAHQDMPLPIAYSNPLSLLQAAKFVWDLSA
KPRQRFLEVLAQNCCDEMEKEKLLEFSSAEGIDDLVAYVNRPRRNLLEVL
EDFRHATSSLTLQQLFEMMPLIQPRSFSIASDVSALSLDLLVAVVEYKTI
MHTPRLGLCSNWLKTLKSGTELSGVVKRGTMVWPKDLSIPLIMVGPGTGI
APFRSIIQNRLYAQSKGATIGPLVVFFGCRNKAADFHFGNDFSTWTDAKQ
VEAHTAFSRDQDQKVYVQHLIAKNGAHLARLIKDLNAYIYVAGNSNNMPK
SVKEAFIEILDGDADYVELMIKQRRYQEETWA*

RE34180.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 16:56:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24397-PA 582 GF24397-PA 1..582 1..582 2561 80.8 Plus
Dana\GF14516-PA 678 GF14516-PA 83..678 3..582 619 28.5 Plus
Dana\GF14065-PA 1356 GF14065-PA 814..1332 84..582 295 25.4 Plus
Dana\GF18497-PA 466 GF18497-PA 88..465 217..581 176 21.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 16:56:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14311-PA 582 GG14311-PA 1..582 1..582 2927 93.3 Plus
Dere\GG10405-PA 679 GG10405-PA 84..679 3..582 620 28.2 Plus
Dere\GG10354-PA 1341 GG10354-PA 661..1317 1..582 309 24.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 16:56:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15063-PA 576 GH15063-PA 1..576 1..582 2182 68.4 Plus
Dgri\GH10739-PA 683 GH10739-PA 87..683 3..582 607 28 Plus
Dgri\GH13337-PA 1359 GH13337-PA 817..1335 84..582 313 26.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:07:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG13667-PB 582 CG13667-PB 1..582 1..582 3028 100 Plus
CG13667-PA 582 CG13667-PA 1..582 1..582 3028 100 Plus
Cpr-PD 679 CG11567-PD 84..679 3..582 602 28.5 Plus
Cpr-PC 679 CG11567-PC 84..679 3..582 602 28.5 Plus
Cpr-PA 679 CG11567-PA 84..679 3..582 602 28.5 Plus
Cpr-PB 550 CG11567-PB 31..550 77..582 499 27.5 Plus
Nos-PK 1098 CG6713-PK 418..1029 1..544 300 24.8 Plus
Nos-PA 1349 CG6713-PA 669..1280 1..544 300 24.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 16:56:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12831-PA 578 GI12831-PA 1..578 1..582 2270 70.9 Plus
Dmoj\GI11531-PA 682 GI11531-PA 87..682 3..582 637 28.7 Plus
Dmoj\GI17812-PA 1367 GI17812-PA 825..1343 84..582 315 27.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 16:56:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24703-PA 583 GL24703-PA 1..583 1..582 2467 77.4 Plus
Dper\GL25521-PA 679 GL25521-PA 84..679 3..582 626 28.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 16:56:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA23957-PA 340 GA23957-PA 1..247 1..246 1031 77.3 Plus
Dpse\GA11069-PA 679 GA11069-PA 84..679 3..582 626 28.5 Plus
Dpse\GA23957-PA 340 GA23957-PA 249..340 491..582 388 77.2 Plus
Dpse\GA19805-PA 1348 GA19805-PA 806..1279 84..544 281 26.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 16:56:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25053-PA 582 GM25053-PA 1..582 1..582 3056 97.4 Plus
Dsec\GM18621-PA 679 GM18621-PA 84..679 3..582 623 28.3 Plus
Dsec\GM11413-PA 1382 GM11413-PA 840..1358 84..582 308 26.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 16:57:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14092-PA 521 GD14092-PA 1..521 1..582 2419 81.8 Plus
Dsim\GD23403-PA 679 GD23403-PA 84..679 3..582 613 28.2 Plus
Dsim\GD22223-PA 1130 GD22223-PA 739..1106 231..582 282 29.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 16:57:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12973-PA 577 GJ12973-PA 1..577 1..582 2172 69.2 Plus
Dvir\GJ12806-PA 685 GJ12806-PA 89..685 3..582 620 28.7 Plus
Dvir\GJ17639-PA 1370 GJ17639-PA 828..1346 84..582 321 26.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 16:57:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10860-PA 584 GK10860-PA 1..584 1..582 1950 61.7 Plus
Dwil\GK14755-PA 681 GK14755-PA 85..681 3..582 615 28.1 Plus
Dwil\GK23979-PA 1356 GK23979-PA 674..1332 1..582 305 24.2 Plus
Dwil\GK13220-PA 461 GK13220-PA 101..460 228..581 179 22.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 16:57:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20740-PA 582 GE20740-PA 1..582 1..582 2929 92.8 Plus
Dyak\GE13802-PA 679 GE13802-PA 84..679 3..582 622 28.2 Plus
Dyak\GE13295-PA 1347 GE13295-PA 667..1323 1..582 320 25 Plus

RE34180.hyp Sequence

Translation from 25 to 1773

> RE34180.hyp
MRLLVLYGSQTGTAQDVAEQIWRESHQLGFQGPVLPFDEYDMTKLIEERL
VVFVVATTGDGVEPDNMKLAWRFLLKRSLPAQSLQGMQFACLGLGDSSYP
KFNYAAKKLSKRLQNLGANSVCPVGLCDDQHDYGHLGVSLSWTKDLWTAL
KGISGLDESKLSNSHQTTVKWSVKELPKDSQIAPMDNLLWSQKQTAHSFK
ILDNQRTTAVDHFQDVRFLRLQCQTEDLSWEPGDVLDVQPQNSDEAVQTF
FDLIREHSLNFDESTIVEVSSAHQDMPLPIAYSNPLSLLQAAKFVWDLSA
KPRQRFLEVLAQNCCDEMEKEKLLEFSSAEGIDDLVAYVNRPRRNLLEVL
EDFRHATSSLTLQQLFEMMPLIQPRSFSIASDVSALSLDLLVAVVEYKTI
MHTPRLGLCSNWLKTLKSGTELSGVVKRGTMVWPKDLSIPLIMVGPGTGI
APFRSIIQNRLYAQSKGATIGPLVVFFGCRNKAADFHFGNDFSTWTDAKQ
VEAHTAFSRDQDQKVYVQHLIAKNGAHLARLIKDLNAYIYVAGNSNNMPK
SVKEAFIEILDGDADYVELMIKQRRYQEETWA*

RE34180.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:41:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG13667-PB 582 CG13667-PB 1..582 1..582 3028 100 Plus
CG13667-PA 582 CG13667-PA 1..582 1..582 3028 100 Plus
Cpr-PD 679 CG11567-PD 84..679 3..582 602 28.5 Plus
Cpr-PC 679 CG11567-PC 84..679 3..582 602 28.5 Plus
Cpr-PA 679 CG11567-PA 84..679 3..582 602 28.5 Plus