BDGP Sequence Production Resources |
Search the DGRC for RE34232
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 342 |
Well: | 32 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Rcp-RB |
Protein status: | RE34232.pep: gold |
Sequenced Size: | 1153 |
Gene | Date | Evidence |
---|---|---|
CG4875-RB | 2009-06-22 | Replacement based on scoring |
1153 bp assembled on 2009-08-05
GenBank Submission: BT089041.1
> RE34232.complete ATTCTAAAATTTGCAGAAATGGAAACGATCAATCCCACGTTCTCGTACCT CACCAATCTGGAGGTAATGCAGATTCTACAGAAGATCAAAAGCACCAAAA AGAAGTTCGGCATGCGCAACTTGGCCACGGTTACCTATGAGGCACTGCAG TATCTGGAGGAGTCGCCCTGCAAGACACAAACTCGTGAGAACATTATGAA TTACGTTAAAGACCTGTCTTCTTATCGTCTAAAGTCCCAAGAGATCCTGC AAATGATCAACGATCCGCCTACAAGTGCACTACACACGCAACTGCTCATC GACGACAATAAAGCTCCACTAACCGATGAGGAGAACGAGAAAATCATTCA GCTGAGCTACAAACACTTCCATGGTGGAGAAACCAAAGGCGCTGCTAAGG AAACACCGGCGGAAAAGCCTGCGGAGTCCACTGCGAAGGCCGGCAAGCAA TCTGGCGTAAAGCGTAATGCCCAGGCAAAATCCAATCCAGCGGAACAAAT AGCTCCAGCGGACAAAACCACGCCAGGTGATGGAGTTACTCCTGCGAATG TCGCTACTCCTTCAAGTGAAGCCACTACTACTACTCCAGCAGAAGAAGCA AGCCCAGTGGAAACATCGTCTTCAGAAAATAATGCTACTCCAGCAAATGA AGCCACTACAGCGCCTGCAACGGATGCACCCACTTCAATGGAAACCAAGT CCAATCCGACACCAGATGGAGAAAACCTCGGGTAGCAGCCGCCAAAATAA CCCATCCGCTTATTACGTTTAACGTTTCATATATTTATGTTGATGGAGCG TATAAAATAAGCTAAAAAAAAAAGGTTTGAAGACGAACTCACCTCAATGG GCATCGTGCAGTGGCCACAGTACTTCATCTGGATCGGATAGGTGACGCCT TCGCGCGGACCCAACTGTAGGCGGTCGGCGACGCTGTTGGTGCCCACATC TTCGTTCGTCATTGCGGATCGGATTAACTGCCTGGGATTTGCTCCGGGTT ATTGAAATATTAAAATAATGACAGTTTTAAGAAGTCGGCTACTGCAAACT GACCGTTTTTGTTTAGGCTCGTAAAATATACTAACATTGACACATGTTAA ATAAATACCTACCTAAAATATACCTTTATTTAAATCGAAAAAAAAAAAAA AAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Rcp-RB | 1150 | Rcp-RB | 71..889 | 4..822 | 4095 | 100 | Plus |
Rcp-RA | 1185 | Rcp-RA | 94..889 | 27..822 | 3980 | 100 | Plus |
Rcp.b | 1048 | Rcp.b | 104..787 | 139..822 | 3420 | 100 | Plus |
Rcp.b | 1048 | Rcp.b | 47..115 | 4..72 | 315 | 97.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 16774702..16775230 | 294..822 | 2570 | 99.1 | Plus |
chrX | 22417052 | chrX | 16775925..16776239 | 823..1137 | 1560 | 99.7 | Plus |
chrX | 22417052 | chrX | 16774489..16774643 | 140..294 | 745 | 98.7 | Plus |
chrX | 22417052 | chrX | 16774313..16774428 | 27..142 | 580 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23542271 | X | 16885075..16885603 | 294..822 | 2645 | 100 | Plus |
X | 23542271 | X | 16886298..16886612 | 823..1137 | 1575 | 100 | Plus |
X | 23542271 | X | 16884862..16885016 | 140..294 | 775 | 100 | Plus |
X | 23542271 | X | 16884686..16884801 | 27..142 | 580 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23527363 | X | 16893173..16893701 | 294..822 | 2645 | 100 | Plus |
X | 23527363 | X | 16894396..16894710 | 823..1137 | 1575 | 100 | Plus |
X | 23527363 | X | 16892960..16893114 | 140..294 | 775 | 100 | Plus |
X | 23527363 | X | 16892784..16892899 | 27..142 | 580 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 16774210..16774235 | 1..26 | 96 | -> | Plus |
chrX | 16774313..16774427 | 27..141 | 100 | -> | Plus |
chrX | 16774491..16774643 | 142..294 | 98 | -> | Plus |
chrX | 16774703..16775231 | 295..824 | 98 | -> | Plus |
chrX | 16775927..16776239 | 825..1137 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4875-RB | 1..717 | 19..735 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rcp-RB | 1..717 | 19..735 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rcp-RB | 1..717 | 19..735 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rcp-RB | 1..717 | 19..735 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4875-RB | 1..827 | 1..831 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rcp-RB | 1..827 | 1..831 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rcp-RC | 3..1138 | 1..1137 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rcp-RC | 3..1138 | 1..1137 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 16884686..16884800 | 27..141 | 100 | -> | Plus |
X | 16884864..16885016 | 142..294 | 100 | -> | Plus |
X | 16885076..16885604 | 295..824 | 99 | -> | Plus |
X | 16884583..16884608 | 1..26 | 96 | -> | Plus |
X | 16886300..16886612 | 825..1137 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 16884686..16884800 | 27..141 | 100 | -> | Plus |
X | 16884864..16885016 | 142..294 | 100 | -> | Plus |
X | 16885076..16885604 | 295..824 | 99 | -> | Plus |
X | 16884583..16884608 | 1..26 | 96 | -> | Plus |
X | 16886300..16886612 | 825..1137 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 16884686..16884800 | 27..141 | 100 | -> | Plus |
X | 16884864..16885016 | 142..294 | 100 | -> | Plus |
X | 16885076..16885604 | 295..824 | 99 | -> | Plus |
X | 16884583..16884608 | 1..26 | 96 | -> | Plus |
X | 16886300..16886612 | 825..1137 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 16778616..16778641 | 1..26 | 96 | -> | Plus |
arm_X | 16778719..16778833 | 27..141 | 100 | -> | Plus |
arm_X | 16778897..16779049 | 142..294 | 100 | -> | Plus |
arm_X | 16779109..16779637 | 295..824 | 99 | -> | Plus |
arm_X | 16780333..16780645 | 825..1137 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 16893174..16893702 | 295..824 | 99 | -> | Plus |
X | 16894398..16894710 | 825..1137 | 100 | Plus | |
X | 16892681..16892706 | 1..26 | 96 | -> | Plus |
X | 16892784..16892898 | 27..141 | 100 | -> | Plus |
X | 16892962..16893114 | 142..294 | 100 | -> | Plus |
Translation from 0 to 734
> RE34232.hyp ILKFAEMETINPTFSYLTNLEVMQILQKIKSTKKKFGMRNLATVTYEALQ YLEESPCKTQTRENIMNYVKDLSSYRLKSQEILQMINDPPTSALHTQLLI DDNKAPLTDEENEKIIQLSYKHFHGGETKGAAKETPAEKPAESTAKAGKQ SGVKRNAQAKSNPAEQIAPADKTTPGDGVTPANVATPSSEATTTTPAEEA SPVETSSSENNATPANEATTAPATDAPTSMETKSNPTPDGENLG*
Translation from 0 to 734
> RE34232.pep ILKFAEMETINPTFSYLTNLEVMQILQKIKSTKKKFGMRNLATVTYEALQ YLEESPCKTQTRENIMNYVKDLSSYRLKSQEILQMINDPPTSALHTQLLI DDNKAPLTDEENEKIIQLSYKHFHGGETKGAAKETPAEKPAESTAKAGKQ SGVKRNAQAKSNPAEQIAPADKTTPGDGVTPANVATPSSEATTTTPAEEA SPVETSSSENNATPANEATTAPATDAPTSMETKSNPTPDGENLG*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF13917-PA | 178 | GF13917-PA | 1..167 | 7..171 | 624 | 74.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG19087-PA | 257 | GG19087-PA | 1..206 | 7..213 | 891 | 84.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH11926-PA | 137 | GH11926-PA | 1..126 | 7..130 | 513 | 74.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Rcp-PC | 238 | CG4875-PC | 1..238 | 7..244 | 1214 | 100 | Plus |
Rcp-PB | 238 | CG4875-PB | 1..238 | 7..244 | 1214 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI15347-PA | 133 | GI15347-PA | 1..117 | 7..123 | 507 | 78.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL22778-PA | 162 | GL22778-PA | 1..122 | 7..128 | 596 | 87.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA18494-PA | 166 | GA18494-PA | 1..122 | 7..128 | 595 | 87.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM13474-PA | 234 | GM13474-PA | 1..234 | 7..244 | 1064 | 89.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD17317-PA | 234 | GD17317-PA | 1..234 | 7..244 | 1069 | 90 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ19451-PA | 132 | GJ19451-PA | 1..129 | 7..138 | 510 | 70.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK18530-PA | 139 | GK18530-PA | 1..119 | 7..125 | 562 | 87.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE17632-PA | 216 | GE17632-PA | 1..211 | 7..244 | 819 | 73.5 | Plus |