Clone RE34232 Report

Search the DGRC for RE34232

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:342
Well:32
Vector:pFlc-1
Associated Gene/TranscriptRcp-RB
Protein status:RE34232.pep: gold
Sequenced Size:1153

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4875-RB 2009-06-22 Replacement based on scoring

Clone Sequence Records

RE34232.complete Sequence

1153 bp assembled on 2009-08-05

GenBank Submission: BT089041.1

> RE34232.complete
ATTCTAAAATTTGCAGAAATGGAAACGATCAATCCCACGTTCTCGTACCT
CACCAATCTGGAGGTAATGCAGATTCTACAGAAGATCAAAAGCACCAAAA
AGAAGTTCGGCATGCGCAACTTGGCCACGGTTACCTATGAGGCACTGCAG
TATCTGGAGGAGTCGCCCTGCAAGACACAAACTCGTGAGAACATTATGAA
TTACGTTAAAGACCTGTCTTCTTATCGTCTAAAGTCCCAAGAGATCCTGC
AAATGATCAACGATCCGCCTACAAGTGCACTACACACGCAACTGCTCATC
GACGACAATAAAGCTCCACTAACCGATGAGGAGAACGAGAAAATCATTCA
GCTGAGCTACAAACACTTCCATGGTGGAGAAACCAAAGGCGCTGCTAAGG
AAACACCGGCGGAAAAGCCTGCGGAGTCCACTGCGAAGGCCGGCAAGCAA
TCTGGCGTAAAGCGTAATGCCCAGGCAAAATCCAATCCAGCGGAACAAAT
AGCTCCAGCGGACAAAACCACGCCAGGTGATGGAGTTACTCCTGCGAATG
TCGCTACTCCTTCAAGTGAAGCCACTACTACTACTCCAGCAGAAGAAGCA
AGCCCAGTGGAAACATCGTCTTCAGAAAATAATGCTACTCCAGCAAATGA
AGCCACTACAGCGCCTGCAACGGATGCACCCACTTCAATGGAAACCAAGT
CCAATCCGACACCAGATGGAGAAAACCTCGGGTAGCAGCCGCCAAAATAA
CCCATCCGCTTATTACGTTTAACGTTTCATATATTTATGTTGATGGAGCG
TATAAAATAAGCTAAAAAAAAAAGGTTTGAAGACGAACTCACCTCAATGG
GCATCGTGCAGTGGCCACAGTACTTCATCTGGATCGGATAGGTGACGCCT
TCGCGCGGACCCAACTGTAGGCGGTCGGCGACGCTGTTGGTGCCCACATC
TTCGTTCGTCATTGCGGATCGGATTAACTGCCTGGGATTTGCTCCGGGTT
ATTGAAATATTAAAATAATGACAGTTTTAAGAAGTCGGCTACTGCAAACT
GACCGTTTTTGTTTAGGCTCGTAAAATATACTAACATTGACACATGTTAA
ATAAATACCTACCTAAAATATACCTTTATTTAAATCGAAAAAAAAAAAAA
AAA

RE34232.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:29:09
Subject Length Description Subject Range Query Range Score Percent Strand
Rcp-RB 1150 Rcp-RB 71..889 4..822 4095 100 Plus
Rcp-RA 1185 Rcp-RA 94..889 27..822 3980 100 Plus
Rcp.b 1048 Rcp.b 104..787 139..822 3420 100 Plus
Rcp.b 1048 Rcp.b 47..115 4..72 315 97.1 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 11:16:59
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 16774702..16775230 294..822 2570 99.1 Plus
chrX 22417052 chrX 16775925..16776239 823..1137 1560 99.7 Plus
chrX 22417052 chrX 16774489..16774643 140..294 745 98.7 Plus
chrX 22417052 chrX 16774313..16774428 27..142 580 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:50:59 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 11:16:57
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16885075..16885603 294..822 2645 100 Plus
X 23542271 X 16886298..16886612 823..1137 1575 100 Plus
X 23542271 X 16884862..16885016 140..294 775 100 Plus
X 23542271 X 16884686..16884801 27..142 580 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:24:48
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 16893173..16893701 294..822 2645 100 Plus
X 23527363 X 16894396..16894710 823..1137 1575 100 Plus
X 23527363 X 16892960..16893114 140..294 775 100 Plus
X 23527363 X 16892784..16892899 27..142 580 100 Plus
Blast to na_te.dros performed on 2019-03-16 11:16:58 has no hits.

RE34232.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 11:17:36 Download gff for RE34232.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 16774210..16774235 1..26 96 -> Plus
chrX 16774313..16774427 27..141 100 -> Plus
chrX 16774491..16774643 142..294 98 -> Plus
chrX 16774703..16775231 295..824 98 -> Plus
chrX 16775927..16776239 825..1137 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 18:12:50 Download gff for RE34232.complete
Subject Subject Range Query Range Percent Splice Strand
CG4875-RB 1..717 19..735 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 13:56:34 Download gff for RE34232.complete
Subject Subject Range Query Range Percent Splice Strand
Rcp-RB 1..717 19..735 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 13:15:03 Download gff for RE34232.complete
Subject Subject Range Query Range Percent Splice Strand
Rcp-RB 1..717 19..735 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:10:33 Download gff for RE34232.complete
Subject Subject Range Query Range Percent Splice Strand
Rcp-RB 1..717 19..735 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-05 16:37:26 Download gff for RE34232.complete
Subject Subject Range Query Range Percent Splice Strand
CG4875-RB 1..827 1..831 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 13:56:34 Download gff for RE34232.complete
Subject Subject Range Query Range Percent Splice Strand
Rcp-RB 1..827 1..831 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 13:15:03 Download gff for RE34232.complete
Subject Subject Range Query Range Percent Splice Strand
Rcp-RC 3..1138 1..1137 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:10:33 Download gff for RE34232.complete
Subject Subject Range Query Range Percent Splice Strand
Rcp-RC 3..1138 1..1137 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:17:36 Download gff for RE34232.complete
Subject Subject Range Query Range Percent Splice Strand
X 16884686..16884800 27..141 100 -> Plus
X 16884864..16885016 142..294 100 -> Plus
X 16885076..16885604 295..824 99 -> Plus
X 16884583..16884608 1..26 96 -> Plus
X 16886300..16886612 825..1137 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:17:36 Download gff for RE34232.complete
Subject Subject Range Query Range Percent Splice Strand
X 16884686..16884800 27..141 100 -> Plus
X 16884864..16885016 142..294 100 -> Plus
X 16885076..16885604 295..824 99 -> Plus
X 16884583..16884608 1..26 96 -> Plus
X 16886300..16886612 825..1137 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:17:36 Download gff for RE34232.complete
Subject Subject Range Query Range Percent Splice Strand
X 16884686..16884800 27..141 100 -> Plus
X 16884864..16885016 142..294 100 -> Plus
X 16885076..16885604 295..824 99 -> Plus
X 16884583..16884608 1..26 96 -> Plus
X 16886300..16886612 825..1137 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:15:03 Download gff for RE34232.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 16778616..16778641 1..26 96 -> Plus
arm_X 16778719..16778833 27..141 100 -> Plus
arm_X 16778897..16779049 142..294 100 -> Plus
arm_X 16779109..16779637 295..824 99 -> Plus
arm_X 16780333..16780645 825..1137 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 11:48:06 Download gff for RE34232.complete
Subject Subject Range Query Range Percent Splice Strand
X 16893174..16893702 295..824 99 -> Plus
X 16894398..16894710 825..1137 100   Plus
X 16892681..16892706 1..26 96 -> Plus
X 16892784..16892898 27..141 100 -> Plus
X 16892962..16893114 142..294 100 -> Plus

RE34232.hyp Sequence

Translation from 0 to 734

> RE34232.hyp
ILKFAEMETINPTFSYLTNLEVMQILQKIKSTKKKFGMRNLATVTYEALQ
YLEESPCKTQTRENIMNYVKDLSSYRLKSQEILQMINDPPTSALHTQLLI
DDNKAPLTDEENEKIIQLSYKHFHGGETKGAAKETPAEKPAESTAKAGKQ
SGVKRNAQAKSNPAEQIAPADKTTPGDGVTPANVATPSSEATTTTPAEEA
SPVETSSSENNATPANEATTAPATDAPTSMETKSNPTPDGENLG*

RE34232.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:31:13
Subject Length Description Subject Range Query Range Score Percent Strand
Rcp-PC 238 CG4875-PC 1..238 7..244 1214 100 Plus
Rcp-PB 238 CG4875-PB 1..238 7..244 1214 100 Plus

RE34232.pep Sequence

Translation from 0 to 734

> RE34232.pep
ILKFAEMETINPTFSYLTNLEVMQILQKIKSTKKKFGMRNLATVTYEALQ
YLEESPCKTQTRENIMNYVKDLSSYRLKSQEILQMINDPPTSALHTQLLI
DDNKAPLTDEENEKIIQLSYKHFHGGETKGAAKETPAEKPAESTAKAGKQ
SGVKRNAQAKSNPAEQIAPADKTTPGDGVTPANVATPSSEATTTTPAEEA
SPVETSSSENNATPANEATTAPATDAPTSMETKSNPTPDGENLG*

RE34232.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 16:34:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13917-PA 178 GF13917-PA 1..167 7..171 624 74.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 16:34:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19087-PA 257 GG19087-PA 1..206 7..213 891 84.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 16:34:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11926-PA 137 GH11926-PA 1..126 7..130 513 74.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:54:01
Subject Length Description Subject Range Query Range Score Percent Strand
Rcp-PC 238 CG4875-PC 1..238 7..244 1214 100 Plus
Rcp-PB 238 CG4875-PB 1..238 7..244 1214 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 16:34:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15347-PA 133 GI15347-PA 1..117 7..123 507 78.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 16:34:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22778-PA 162 GL22778-PA 1..122 7..128 596 87.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 16:34:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18494-PA 166 GA18494-PA 1..122 7..128 595 87.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 16:34:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13474-PA 234 GM13474-PA 1..234 7..244 1064 89.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 16:34:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17317-PA 234 GD17317-PA 1..234 7..244 1069 90 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 16:34:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19451-PA 132 GJ19451-PA 1..129 7..138 510 70.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 16:34:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK18530-PA 139 GK18530-PA 1..119 7..125 562 87.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 16:34:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17632-PA 216 GE17632-PA 1..211 7..244 819 73.5 Plus