BDGP Sequence Production Resources |
Search the DGRC for RE34324
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 343 |
Well: | 24 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG5928-RB |
Protein status: | RE34324.pep: gold |
Preliminary Size: | 552 |
Sequenced Size: | 876 |
Gene | Date | Evidence |
---|---|---|
CG5928 | 2002-01-01 | Sim4 clustering to Release 2 |
CG5928 | 2002-06-10 | Blastp of sequenced clone |
CG5928 | 2003-01-01 | Sim4 clustering to Release 3 |
CG5928 | 2008-04-29 | Release 5.5 accounting |
CG5928 | 2008-08-15 | Release 5.9 accounting |
CG5928 | 2008-12-18 | 5.12 accounting |
876 bp (876 high quality bases) assembled on 2002-06-10
GenBank Submission: AY071320
> RE34324.complete ATTCAGTTGAATTTTGGACTCGAGAGACTTCGGATCGAAGCTCAACCTGG GATTTGGATTTGGAAGTTTTCACCTTGTTATAAAACCACATAGTTGGGCC CTTTCCCCCTTCTCCGCACATACTAACGAAAATGCTGCAACTTCAAAAGA TGAATACTCTGCTGCTGCTCTTGGCCATGATGCGCTGCATCTGTGCCACG CCCATAGCTCCTGCCACGCCCGATGGCGCCACGCCCATCGACGCCCGCGT CTCGGCCGCCGACTTCGGAGCCCAGGATGCTTTCGATGCCGCCGACAGCT CCGCGGAATCCACCCACGCGCAGGCCAGCGACGCCGGGTTCAAGGTGAGT AACCGAGGTATACTTTAAAAATCCAAGTGACTTCCCCTTATTTTTCGGCA GATCTCTCTCCTGCCCACTCCGGCTAAAACGGCGGAATCGGTGAATCTAG AGCAGGAGGCCATTCCCTCGAAGGTGCTGAGCGTGTACGACAACAGTCAA AAGAGGCTGGCCGATTTGGCGCAGCCCGTTCCCATTTTGGACTCCATCAG TGAGCACGAGAAGTACGGCAACAACGGTGACATGTTCGACGGCATCTCGC GATCCATTGTCAACGGCTACGAGGCCTTTTCCAACCTGCTCAACACCTTT ATTCAGAAGCCCAAAGAGTTGGCGCGCAGCGTGACGAAGGGGATCACGGC TCAATTGGATATCATAGGAGGCAAATTGGTGGGCCTTTGAGAAGGCGTGT AATTTAAATAAATACTTTAATTTATTTTGTAACTTAACACGAACATGTTG TTTAGGAATGCATTTCGATATAAATATTTGTATGTATGAATAAAATAATC ATACGCATAGTAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG5928-RB | 861 | CG5928-RB | 1..861 | 1..861 | 4305 | 100 | Plus |
CG5928-RA | 878 | CG5928-RA | 417..878 | 400..861 | 2310 | 100 | Plus |
CG5928-RA | 878 | CG5928-RA | 75..418 | 1..344 | 1720 | 100 | Plus |
Tsp5D-RB | 1832 | Tsp5D-RB | 1696..1832 | 862..726 | 685 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 5960199..5960722 | 1..524 | 2575 | 99.4 | Plus |
chrX | 22417052 | chrX | 5961293..5961499 | 654..861 | 990 | 99.5 | Plus |
chrX | 22417052 | chrX | 5960788..5960922 | 522..656 | 675 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Quasimodo | 7387 | Quasimodo QUASIMODO 7387bp Derived from P1 clones DS08479 & DS07153 by Sue Celniker, 29 March 2001. | 6507..6603 | 861..771 | 111 | 65 | Minus |
Tc3 | 1743 | Tc3 TC3 1743bp | 1628..1662 | 852..816 | 108 | 81.1 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 5960199..5960722 | 1..524 | 99 | -> | Plus |
chrX | 5960791..5960922 | 525..656 | 100 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5928-RA | 208..552 | 394..740 | 99 | Plus | |
CG5928-RA | 1..207 | 132..338 | 100 | == | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5928-RA | 1..207 | 132..338 | 100 | == | Plus |
CG5928-RA | 208..552 | 394..740 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5928-RA | 1..207 | 132..338 | 100 | == | Plus |
CG5928-RA | 208..552 | 394..740 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5928-RA | 1..207 | 132..338 | 100 | == | Plus |
CG5928-RA | 208..552 | 394..740 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5928-RA | 208..552 | 394..740 | 99 | Plus | |
CG5928-RA | 1..207 | 132..338 | 100 | == | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5928-RB | 1..861 | 1..861 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5928-RB | 1..861 | 1..861 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5928-RB | 1..861 | 1..861 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5928-RB | 1..861 | 1..861 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5928-RB | 3..863 | 1..861 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 6068552..6068683 | 525..656 | 100 | -> | Plus |
X | 6069057..6069261 | 657..861 | 100 | Plus | |
X | 6067960..6068483 | 1..524 | 100 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 6068552..6068683 | 525..656 | 100 | -> | Plus |
X | 6069057..6069261 | 657..861 | 100 | Plus | |
X | 6067960..6068483 | 1..524 | 100 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 6068552..6068683 | 525..656 | 100 | -> | Plus |
X | 6069057..6069261 | 657..861 | 100 | Plus | |
X | 6067960..6068483 | 1..524 | 100 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 5961993..5962516 | 1..524 | 100 | -> | Plus |
arm_X | 5962585..5962716 | 525..656 | 100 | -> | Plus |
arm_X | 5963090..5963294 | 657..861 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 6077155..6077359 | 657..861 | 100 | Plus | |
X | 6076058..6076581 | 1..524 | 100 | -> | Plus |
X | 6076650..6076781 | 525..656 | 100 | -> | Plus |
Translation from 131 to 367
> RE34324.pep MLQLQKMNTLLLLLAMMRCICATPIAPATPDGATPIDARVSAADFGAQDA FDAADSSAESTHAQASDAGFKVSNRGIL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF20369-PA | 184 | GF20369-PA | 1..74 | 1..73 | 233 | 67.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG19571-PA | 183 | GG19571-PA | 1..73 | 1..73 | 322 | 84.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH24849-PA | 186 | GH24849-PA | 17..76 | 15..73 | 168 | 60.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG5928-PB | 78 | CG5928-PB | 1..78 | 1..78 | 389 | 100 | Plus |
CG5928-PA | 183 | CG5928-PA | 1..73 | 1..73 | 363 | 98.6 | Plus |
CG5928-PC | 199 | CG5928-PC | 1..73 | 1..73 | 363 | 98.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI16185-PA | 319 | GI16185-PA | 19..67 | 24..73 | 135 | 64 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL14908-PA | 186 | GL14908-PA | 23..75 | 18..72 | 160 | 61.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA19236-PA | 186 | GA19236-PA | 23..75 | 18..72 | 160 | 61.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM12464-PA | 183 | GM12464-PA | 1..73 | 1..73 | 334 | 87.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD16782-PA | 183 | GD16782-PA | 1..73 | 1..73 | 332 | 89 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ16674-PA | 181 | GJ16674-PA | 21..71 | 22..73 | 133 | 71.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK15823-PA | 192 | GK15823-PA | 15..82 | 10..73 | 160 | 58.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE16731-PA | 186 | GE16731-PA | 1..76 | 1..73 | 262 | 84.2 | Plus |
Translation from 131 to 367
> RE34324.hyp MLQLQKMNTLLLLLAMMRCICATPIAPATPDGATPIDARVSAADFGAQDA FDAADSSAESTHAQASDAGFKVSNRGIL*