BDGP Sequence Production Resources |
Search the DGRC for RE34447
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 344 |
Well: | 47 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG5059-RB |
Protein status: | RE34447.pep: gold |
Sequenced Size: | 1349 |
Gene | Date | Evidence |
---|---|---|
CG5059-RB | 2010-01-14 | Manual selection by Sue Celniker |
1349 bp assembled on 2010-02-12
GenBank Submission: BT120333.1
> RE34447.complete AGTATTCAATTGTCAGCATGATTGGTGTGCCACAATCTTGGATCGAACTC AGCACAACAGCTGCGATGGCTGGCATCAAGAGCCCCGACAGAATCACTCC GTTGCCATTCAACAATGGCGAGGAGTACCTGAGACTTCTGCGCGAGGCCC AGCGCGAGTCGAACCAGTCGAGCCGTGTCGTCTCCTTGGCCAGCTCCCGT CGTGATACGCCCCGTGATAGCCCCAAGAGTCCACCGAACAGTCCCCAGTC GGAGCTCTGTCCGGATGATGAGCTCAGAAACGTGTACATCAACTACTGGA CCAAGGGAGGAGACAAACAGAATGCAGGCAATGAAGATTGGCTGAAGAAC TGGAATCAGCCACCCAGTAGCTGGAACATTGAGGATTCAAGTCGGGATGC CGGCGACGAGGGCGAGAAAAAGAAGACTAACACAGGCTACTCCATCCGTT TGAAGCGACTGGGCTCCAACTCGTTGTTCTCCCGCGAAATTCTGTACTCG CTGCTGGTGACCAACGTCCTGTCCCTGCTGCTGGGAGCTGGATTCGGGCT ATGGTTGAGCAAGCGTGGCATACTCCTTACCCGTGTGGTCATTGACTGAA AGATGCCATAAACAAAAAGGAGAAAGAGGAAATATATATAATCGTTTTCA ATCTATCAATATGCACATCAATCGAAAACAGAACACGATGCGTTCCATAT AAGAAAACGAAGTATACACATCTATACAGCCAACCGTATTCCAACTCATT TGTATTTTTATCGGAAGTCTATATTTTCGACACCTTCTCATTCAGTACAT ACCTATAAAAATGTAATTTCTAATTACTAAGCCAGCAAACTAAAACAGGC CTTTGGGCAATGGTTGAAACTAAGCGTTTTCATATTTTATATAATTTTAT ATATTTAACATTATATCAAGGCAGCAAATCTAATGATACAGAAAAGCATT TATAGATGCTCCATATATTTTGCTTTAGCCGTATGTCTTAGCACCCAACC GTGCATTATATCCAATACAAATGTACGCCGAACTTCGTGTTAAGAATTTC AATTTCATCATCATACATCATATAGAACAACCATAAACATTTGTAGACAT ATTATAGTTGAATCGTATTGTATCCTGATTGTACTTTTTGTTGAACAATC GTCAAATGTTTCGATACAATAAGCATATAAGAAAAACGATACAAAAGGAG AAAAAAAAACAATATGGCACACATAAGATTATATCTTTAATGTGAGGGAA GGGTTATCCCCCACACAAAAAAAACAGAATAGTTGTAATGATTTTTTATA TTAAAATATTTTTCAATATCTATTTAAAAGAGTAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG5059.c | 1800 | CG5059.c | 388..1719 | 1..1332 | 6660 | 100 | Plus |
CG5059-RB | 1450 | CG5059-RB | 38..1369 | 1..1332 | 6660 | 100 | Plus |
CG5059-RC | 2005 | CG5059-RC | 624..1924 | 32..1332 | 6505 | 100 | Plus |
CG5059-RC | 2005 | CG5059-RC | 31..63 | 1..33 | 165 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 20503589..20504374 | 1332..547 | 3915 | 99.9 | Minus |
chr3L | 24539361 | chr3L | 20504843..20505126 | 313..30 | 1375 | 98.9 | Minus |
chr3L | 24539361 | chr3L | 20504433..20504616 | 548..365 | 920 | 100 | Minus |
chr3L | 24539361 | chr3L | 20504715..20504778 | 367..304 | 320 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 20514599..20515384 | 1332..547 | 3930 | 100 | Minus |
3L | 28110227 | 3L | 20515853..20516136 | 313..30 | 1375 | 98.9 | Minus |
3L | 28110227 | 3L | 20515443..20515626 | 548..365 | 920 | 100 | Minus |
3L | 28110227 | 3L | 20515725..20515788 | 367..304 | 320 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 20507699..20508484 | 1332..547 | 3930 | 100 | Minus |
3L | 28103327 | 3L | 20508953..20509236 | 313..30 | 1375 | 98.9 | Minus |
3L | 28103327 | 3L | 20508543..20508726 | 548..365 | 920 | 100 | Minus |
3L | 28103327 | 3L | 20508825..20508888 | 367..304 | 320 | 100 | Minus |
3L | 28103327 | 3L | 20510361..20510393 | 33..1 | 165 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
rooA | 7621 | rooA ROOA_LTR 7621bp | 1913..1957 | 661..704 | 114 | 75.6 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 20503588..20504373 | 548..1333 | 99 | <- | Minus |
chr3L | 20504434..20504613 | 368..547 | 100 | <- | Minus |
chr3L | 20504715..20504776 | 306..367 | 100 | <- | Minus |
chr3L | 20504851..20505122 | 34..305 | 100 | <- | Minus |
chr3L | 20506251..20506283 | 1..33 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5059-RB | 1..582 | 18..599 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5059-RB | 1..582 | 18..599 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5059-RB | 1..582 | 18..599 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5059-RB | 1..582 | 18..599 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5059-RB | 1..1332 | 1..1333 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5059-RB | 1..1332 | 1..1333 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5059-RB | 12..1343 | 1..1333 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5059-RB | 12..1343 | 1..1333 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 20515725..20515786 | 306..367 | 100 | <- | Minus |
3L | 20514598..20515383 | 548..1333 | 99 | <- | Minus |
3L | 20515444..20515623 | 368..547 | 100 | <- | Minus |
3L | 20515861..20516132 | 34..305 | 100 | <- | Minus |
3L | 20517261..20517293 | 1..33 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 20515725..20515786 | 306..367 | 100 | <- | Minus |
3L | 20514598..20515383 | 548..1333 | 99 | <- | Minus |
3L | 20515444..20515623 | 368..547 | 100 | <- | Minus |
3L | 20515861..20516132 | 34..305 | 100 | <- | Minus |
3L | 20517261..20517293 | 1..33 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 20515725..20515786 | 306..367 | 100 | <- | Minus |
3L | 20514598..20515383 | 548..1333 | 99 | <- | Minus |
3L | 20515444..20515623 | 368..547 | 100 | <- | Minus |
3L | 20515861..20516132 | 34..305 | 100 | <- | Minus |
3L | 20517261..20517293 | 1..33 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 20508961..20509232 | 34..305 | 100 | <- | Minus |
arm_3L | 20510361..20510393 | 1..33 | 100 | Minus | |
arm_3L | 20507698..20508483 | 548..1333 | 99 | <- | Minus |
arm_3L | 20508544..20508723 | 368..547 | 100 | <- | Minus |
arm_3L | 20508825..20508886 | 306..367 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 20507698..20508483 | 548..1333 | 99 | <- | Minus |
3L | 20508544..20508723 | 368..547 | 100 | <- | Minus |
3L | 20508825..20508886 | 306..367 | 100 | <- | Minus |
3L | 20508961..20509232 | 34..305 | 100 | <- | Minus |
3L | 20510361..20510393 | 1..33 | 100 | Minus |
Translation from 2 to 598
> RE34447.hyp YSIVSMIGVPQSWIELSTTAAMAGIKSPDRITPLPFNNGEEYLRLLREAQ RESNQSSRVVSLASSRRDTPRDSPKSPPNSPQSELCPDDELRNVYINYWT KGGDKQNAGNEDWLKNWNQPPSSWNIEDSSRDAGDEGEKKKTNTGYSIRL KRLGSNSLFSREILYSLLVTNVLSLLLGAGFGLWLSKRGILLTRVVID*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG5059-PB | 193 | CG5059-PB | 1..193 | 6..198 | 1008 | 100 | Plus |
CG5059-PA | 201 | CG5059-PA | 14..201 | 11..198 | 979 | 99.5 | Plus |
CG5059-PE | 177 | CG5059-PE | 1..177 | 22..198 | 927 | 100 | Plus |
CG5059-PD | 177 | CG5059-PD | 1..177 | 22..198 | 927 | 100 | Plus |
CG5059-PC | 177 | CG5059-PC | 1..177 | 22..198 | 927 | 100 | Plus |
Translation from 2 to 598
> RE34447.pep YSIVSMIGVPQSWIELSTTAAMAGIKSPDRITPLPFNNGEEYLRLLREAQ RESNQSSRVVSLASSRRDTPRDSPKSPPNSPQSELCPDDELRNVYINYWT KGGDKQNAGNEDWLKNWNQPPSSWNIEDSSRDAGDEGEKKKTNTGYSIRL KRLGSNSLFSREILYSLLVTNVLSLLLGAGFGLWLSKRGILLTRVVID*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF24126-PA | 208 | GF24126-PA | 14..208 | 11..198 | 887 | 89.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG13304-PA | 206 | GG13304-PA | 14..206 | 11..198 | 890 | 91.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH17012-PA | 203 | GH17012-PA | 14..203 | 11..198 | 819 | 85 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG5059-PB | 193 | CG5059-PB | 1..193 | 6..198 | 1008 | 100 | Plus |
CG5059-PA | 201 | CG5059-PA | 14..201 | 11..198 | 979 | 99.5 | Plus |
CG5059-PE | 177 | CG5059-PE | 1..177 | 22..198 | 927 | 100 | Plus |
CG5059-PD | 177 | CG5059-PD | 1..177 | 22..198 | 927 | 100 | Plus |
CG5059-PC | 177 | CG5059-PC | 1..177 | 22..198 | 927 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI11906-PA | 203 | GI11906-PA | 14..203 | 11..198 | 792 | 83.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL12771-PA | 205 | GL12771-PA | 14..205 | 11..198 | 832 | 85 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA18627-PA | 205 | GA18627-PA | 14..205 | 11..198 | 784 | 85 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM22205-PA | 206 | GM22205-PA | 14..206 | 11..198 | 913 | 93.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD12180-PA | 206 | GD12180-PA | 14..206 | 11..198 | 913 | 93.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ13780-PA | 202 | GJ13780-PA | 14..202 | 11..198 | 823 | 85 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK12337-PA | 209 | GK12337-PA | 14..209 | 11..198 | 807 | 82.7 | Plus |