Clone RE34459 Report

Search the DGRC for RE34459

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:344
Well:59
Vector:pFlc-1
Associated Gene/TranscriptNtmt-RA
Protein status:RE34459.pep: gold
Sequenced Size:1054

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1675 2003-01-01 Sim4 clustering to Release 3
CG1675 2004-01-14 Blastp of sequenced clone
CG1675 2008-04-29 Release 5.5 accounting
CG1675 2008-08-15 Release 5.9 accounting
CG1675 2008-12-18 5.12 accounting

Clone Sequence Records

RE34459.complete Sequence

1054 bp (1054 high quality bases) assembled on 2004-01-14

GenBank Submission: BT011456

> RE34459.complete
CTGGTTATCGCACTAAAACAAAACAAAGCATGCGGCCTTCGAAATCCTGA
CAAAAATGACGACTACATTAGAAGAGCAGCTTTCAGACAAGTTGCAGATG
ATGGACGAGACCACGGATAAGGTCCAGGGGTCGTCGAAGCAGAAGGATGA
TAGCAGTATAGCCGCAAGTTCAGATGCCAAGACAGCGTCCCCTTCTTCGA
GCGATAGTTCGACCAAAGTCGCCGCACCGGAGTCCGAATTTTACAATAAG
GCACAAAAATATTGGTCTGAGGTACCGGCGACTGTTAACGGGATGCTCGG
CGGCCTGGGCTACATTAGTGCCATAGATATACAGGGATCGAATGTGTTCC
TGCGCGAGATCCGCGTGCCGGGCAACAGGTTGGCCCTCGACTGCGGAGCT
GGCATTGGTCGGGTGACTCGGAATCTCCTGATCCCCCGCTTCAGCTGCGT
GGATCTTGTCGAGCAGGATCCCGCGTTTGCCGATAAAGCACGGGAGTACT
GCACTTCGGAAGACGGAAGCCGTGGAAAGGTGGGACAGATCTATAACGTG
GGATTGCAGAAGTTTACGCCTACGCAACAGTACGACCTCGTTTGGACCCA
GTGGGTCCTGGGCCATCTCACGGACCGCGATCTGGTCTCGTTCTTTCGAC
GCATAAAGCAGGGACTGGCGCCCGGCGCCTTCTTGTGTCTGAAGGAGAAC
GTGAGCAGCTCGAAGAAGACAGTGGAAGATAGGAACGACTCGTCGGTAAC
GAGGCCTCTGGACAGCTATGAACACTTCCTAAAGGAAGCCGGATTTCGCA
TTGTACGCAAGGTCAAGCAACAAAACTTTCCCAAGGGACTCTTTCCAGTG
TACATGATAGCCTGCAAACCCGTCTCCAAGGAATAGGTTTAGTATTTAGT
TAGTTTTACTGTTGACCTACAAGCGATTGTACTAAAGTTATCCGAAAAAT
TTAATGTCACATTACTAGCTAGTCACTTCAAATTGTAGCGTTCTAATCAA
CGAATAAACAAGCTTACAAAAGCTTGAACACGTTCCCCAAAAAAAAAAAA
AAAA

RE34459.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:08:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG1675-RA 886 CG1675-RA 1..886 1..886 4430 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 04:56:35
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 5753127..5754162 1..1036 5165 99.9 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:51:06 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 04:56:33
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9865649..9866684 1..1036 5180 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:53:25
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 9866848..9867883 1..1036 5180 100 Plus
Blast to na_te.dros performed 2019-03-16 04:56:33
Subject Length Description Subject Range Query Range Score Percent Strand
invader4 3105 invader4 INVADER4 3105bp 2036..2097 992..931 112 64.5 Minus

RE34459.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 04:57:27 Download gff for RE34459.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 5753127..5754162 1..1038 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:11:11 Download gff for RE34459.complete
Subject Subject Range Query Range Percent Splice Strand
CG1675-RA 1..831 56..886 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:41:54 Download gff for RE34459.complete
Subject Subject Range Query Range Percent Splice Strand
CG1675-RA 1..831 56..886 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:46:01 Download gff for RE34459.complete
Subject Subject Range Query Range Percent Splice Strand
Ntmt-RA 1..831 56..886 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:30:40 Download gff for RE34459.complete
Subject Subject Range Query Range Percent Splice Strand
CG1675-RA 1..831 56..886 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:54:42 Download gff for RE34459.complete
Subject Subject Range Query Range Percent Splice Strand
Ntmt-RA 1..831 56..886 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:51:20 Download gff for RE34459.complete
Subject Subject Range Query Range Percent Splice Strand
CG1675-RA 1..886 1..886 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:41:53 Download gff for RE34459.complete
Subject Subject Range Query Range Percent Splice Strand
CG1675-RA 1..1036 1..1036 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:46:01 Download gff for RE34459.complete
Subject Subject Range Query Range Percent Splice Strand
Ntmt-RA 18..1053 1..1036 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:30:41 Download gff for RE34459.complete
Subject Subject Range Query Range Percent Splice Strand
CG1675-RA 1..886 1..886 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:54:42 Download gff for RE34459.complete
Subject Subject Range Query Range Percent Splice Strand
Ntmt-RA 18..1053 1..1036 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:57:27 Download gff for RE34459.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9865649..9866684 1..1038 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:57:27 Download gff for RE34459.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9865649..9866684 1..1038 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:57:27 Download gff for RE34459.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9865649..9866684 1..1038 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:46:01 Download gff for RE34459.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5753154..5754189 1..1038 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:03:13 Download gff for RE34459.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9866848..9867883 1..1038 99   Plus

RE34459.hyp Sequence

Translation from 55 to 885

> RE34459.hyp
MTTTLEEQLSDKLQMMDETTDKVQGSSKQKDDSSIAASSDAKTASPSSSD
SSTKVAAPESEFYNKAQKYWSEVPATVNGMLGGLGYISAIDIQGSNVFLR
EIRVPGNRLALDCGAGIGRVTRNLLIPRFSCVDLVEQDPAFADKAREYCT
SEDGSRGKVGQIYNVGLQKFTPTQQYDLVWTQWVLGHLTDRDLVSFFRRI
KQGLAPGAFLCLKENVSSSKKTVEDRNDSSVTRPLDSYEHFLKEAGFRIV
RKVKQQNFPKGLFPVYMIACKPVSKE*

RE34459.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:14:58
Subject Length Description Subject Range Query Range Score Percent Strand
Ntmt-PA 276 CG1675-PA 1..276 1..276 1423 100 Plus

RE34459.pep Sequence

Translation from 55 to 885

> RE34459.pep
MTTTLEEQLSDKLQMMDETTDKVQGSSKQKDDSSIAASSDAKTASPSSSD
SSTKVAAPESEFYNKAQKYWSEVPATVNGMLGGLGYISAIDIQGSNVFLR
EIRVPGNRLALDCGAGIGRVTRNLLIPRFSCVDLVEQDPAFADKAREYCT
SEDGSRGKVGQIYNVGLQKFTPTQQYDLVWTQWVLGHLTDRDLVSFFRRI
KQGLAPGAFLCLKENVSSSKKTVEDRNDSSVTRPLDSYEHFLKEAGFRIV
RKVKQQNFPKGLFPVYMIACKPVSKE*

RE34459.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 19:50:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11861-PA 254 GF11861-PA 8..254 26..276 1048 75.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 19:50:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24113-PA 276 GG24113-PA 1..276 1..276 1287 90.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 19:50:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21679-PA 239 GH21679-PA 12..236 47..271 886 70.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:26:59
Subject Length Description Subject Range Query Range Score Percent Strand
Ntmt-PB 276 CG1675-PB 1..276 1..276 1423 100 Plus
Ntmt-PA 276 CG1675-PA 1..276 1..276 1423 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 19:50:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18834-PA 269 GI18834-PA 52..262 61..271 927 76.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 19:50:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10697-PA 253 GL10697-PA 8..251 18..274 954 68.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 19:50:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14125-PA 253 GA14125-PA 1..251 16..274 953 68 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 19:50:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21161-PA 276 GM21161-PA 1..276 1..276 1419 94.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 19:50:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10692-PA 276 GD10692-PA 1..276 1..276 1407 93.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 19:50:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21861-PA 255 GJ21861-PA 26..253 45..272 920 71.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 19:50:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21963-PA 276 GK21963-PA 1..271 1..272 962 65.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 19:50:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19310-PA 276 GE19310-PA 1..276 1..276 1374 91.7 Plus