BDGP Sequence Production Resources |
Search the DGRC for RE34459
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 344 |
Well: | 59 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Ntmt-RA |
Protein status: | RE34459.pep: gold |
Sequenced Size: | 1054 |
Gene | Date | Evidence |
---|---|---|
CG1675 | 2003-01-01 | Sim4 clustering to Release 3 |
CG1675 | 2004-01-14 | Blastp of sequenced clone |
CG1675 | 2008-04-29 | Release 5.5 accounting |
CG1675 | 2008-08-15 | Release 5.9 accounting |
CG1675 | 2008-12-18 | 5.12 accounting |
1054 bp (1054 high quality bases) assembled on 2004-01-14
GenBank Submission: BT011456
> RE34459.complete CTGGTTATCGCACTAAAACAAAACAAAGCATGCGGCCTTCGAAATCCTGA CAAAAATGACGACTACATTAGAAGAGCAGCTTTCAGACAAGTTGCAGATG ATGGACGAGACCACGGATAAGGTCCAGGGGTCGTCGAAGCAGAAGGATGA TAGCAGTATAGCCGCAAGTTCAGATGCCAAGACAGCGTCCCCTTCTTCGA GCGATAGTTCGACCAAAGTCGCCGCACCGGAGTCCGAATTTTACAATAAG GCACAAAAATATTGGTCTGAGGTACCGGCGACTGTTAACGGGATGCTCGG CGGCCTGGGCTACATTAGTGCCATAGATATACAGGGATCGAATGTGTTCC TGCGCGAGATCCGCGTGCCGGGCAACAGGTTGGCCCTCGACTGCGGAGCT GGCATTGGTCGGGTGACTCGGAATCTCCTGATCCCCCGCTTCAGCTGCGT GGATCTTGTCGAGCAGGATCCCGCGTTTGCCGATAAAGCACGGGAGTACT GCACTTCGGAAGACGGAAGCCGTGGAAAGGTGGGACAGATCTATAACGTG GGATTGCAGAAGTTTACGCCTACGCAACAGTACGACCTCGTTTGGACCCA GTGGGTCCTGGGCCATCTCACGGACCGCGATCTGGTCTCGTTCTTTCGAC GCATAAAGCAGGGACTGGCGCCCGGCGCCTTCTTGTGTCTGAAGGAGAAC GTGAGCAGCTCGAAGAAGACAGTGGAAGATAGGAACGACTCGTCGGTAAC GAGGCCTCTGGACAGCTATGAACACTTCCTAAAGGAAGCCGGATTTCGCA TTGTACGCAAGGTCAAGCAACAAAACTTTCCCAAGGGACTCTTTCCAGTG TACATGATAGCCTGCAAACCCGTCTCCAAGGAATAGGTTTAGTATTTAGT TAGTTTTACTGTTGACCTACAAGCGATTGTACTAAAGTTATCCGAAAAAT TTAATGTCACATTACTAGCTAGTCACTTCAAATTGTAGCGTTCTAATCAA CGAATAAACAAGCTTACAAAAGCTTGAACACGTTCCCCAAAAAAAAAAAA AAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG1675-RA | 886 | CG1675-RA | 1..886 | 1..886 | 4430 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 5753127..5754162 | 1..1036 | 5165 | 99.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 9865649..9866684 | 1..1036 | 5180 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 9866848..9867883 | 1..1036 | 5180 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
invader4 | 3105 | invader4 INVADER4 3105bp | 2036..2097 | 992..931 | 112 | 64.5 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 5753127..5754162 | 1..1038 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1675-RA | 1..831 | 56..886 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1675-RA | 1..831 | 56..886 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ntmt-RA | 1..831 | 56..886 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1675-RA | 1..831 | 56..886 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ntmt-RA | 1..831 | 56..886 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1675-RA | 1..886 | 1..886 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1675-RA | 1..1036 | 1..1036 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ntmt-RA | 18..1053 | 1..1036 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1675-RA | 1..886 | 1..886 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ntmt-RA | 18..1053 | 1..1036 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 9865649..9866684 | 1..1038 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 9865649..9866684 | 1..1038 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 9865649..9866684 | 1..1038 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 5753154..5754189 | 1..1038 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 9866848..9867883 | 1..1038 | 99 | Plus |
Translation from 55 to 885
> RE34459.hyp MTTTLEEQLSDKLQMMDETTDKVQGSSKQKDDSSIAASSDAKTASPSSSD SSTKVAAPESEFYNKAQKYWSEVPATVNGMLGGLGYISAIDIQGSNVFLR EIRVPGNRLALDCGAGIGRVTRNLLIPRFSCVDLVEQDPAFADKAREYCT SEDGSRGKVGQIYNVGLQKFTPTQQYDLVWTQWVLGHLTDRDLVSFFRRI KQGLAPGAFLCLKENVSSSKKTVEDRNDSSVTRPLDSYEHFLKEAGFRIV RKVKQQNFPKGLFPVYMIACKPVSKE*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Ntmt-PA | 276 | CG1675-PA | 1..276 | 1..276 | 1423 | 100 | Plus |
Translation from 55 to 885
> RE34459.pep MTTTLEEQLSDKLQMMDETTDKVQGSSKQKDDSSIAASSDAKTASPSSSD SSTKVAAPESEFYNKAQKYWSEVPATVNGMLGGLGYISAIDIQGSNVFLR EIRVPGNRLALDCGAGIGRVTRNLLIPRFSCVDLVEQDPAFADKAREYCT SEDGSRGKVGQIYNVGLQKFTPTQQYDLVWTQWVLGHLTDRDLVSFFRRI KQGLAPGAFLCLKENVSSSKKTVEDRNDSSVTRPLDSYEHFLKEAGFRIV RKVKQQNFPKGLFPVYMIACKPVSKE*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF11861-PA | 254 | GF11861-PA | 8..254 | 26..276 | 1048 | 75.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG24113-PA | 276 | GG24113-PA | 1..276 | 1..276 | 1287 | 90.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH21679-PA | 239 | GH21679-PA | 12..236 | 47..271 | 886 | 70.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Ntmt-PB | 276 | CG1675-PB | 1..276 | 1..276 | 1423 | 100 | Plus |
Ntmt-PA | 276 | CG1675-PA | 1..276 | 1..276 | 1423 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI18834-PA | 269 | GI18834-PA | 52..262 | 61..271 | 927 | 76.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL10697-PA | 253 | GL10697-PA | 8..251 | 18..274 | 954 | 68.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA14125-PA | 253 | GA14125-PA | 1..251 | 16..274 | 953 | 68 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM21161-PA | 276 | GM21161-PA | 1..276 | 1..276 | 1419 | 94.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD10692-PA | 276 | GD10692-PA | 1..276 | 1..276 | 1407 | 93.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ21861-PA | 255 | GJ21861-PA | 26..253 | 45..272 | 920 | 71.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK21963-PA | 276 | GK21963-PA | 1..271 | 1..272 | 962 | 65.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE19310-PA | 276 | GE19310-PA | 1..276 | 1..276 | 1374 | 91.7 | Plus |