BDGP Sequence Production Resources |
Search the DGRC for RE34993
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 349 |
Well: | 93 |
Vector: | pFlc-1 |
Associated Gene/Transcript | dpn-RA |
Protein status: | RE34993.pep: gold |
Preliminary Size: | 1569 |
Sequenced Size: | 2049 |
Gene | Date | Evidence |
---|---|---|
CG8704 | 2001-12-14 | Blastp of sequenced clone |
CG8704 | 2002-01-01 | Sim4 clustering to Release 2 |
CG8704 | 2003-01-01 | Sim4 clustering to Release 3 |
dpn | 2008-04-29 | Release 5.5 accounting |
dpn | 2008-08-15 | Release 5.9 accounting |
dpn | 2008-12-18 | 5.12 accounting |
2049 bp (2049 high quality bases) assembled on 2001-12-14
GenBank Submission: AY071330
> RE34993.complete AGTATCCTTTTGGCATCTCGCGAGCGCGGTCGTCTGCCGCTCTCCTTTGA ATGAACATTTAAAATACTATTCTATACGATTCGATAACCAGAACGATCTT TAACGCGTACCGCTTGTTAAGTTTTTGTTGTTCGGACATTACTAAGAAGT ACGTGCAATAATTGTTATAACTATTTTCGTACTCGAACCAAAGTTATTGT GTTGTGAAAAAGACCAAATCGAAATCGAACTATCTTGGATTATCTCCCAC TTGGATATACAAATTAAAATCGTTACAAAATGGATTACAAAAACGATATT AATTCCGACGACGATTTCGACTGCTCCAACGGCTATAGCGACAGCTATGG CTCCAATGGACGCATGTCCAATCCCAATGGATTGTCAAAAGCAGAACTTA GAAAGACCAACAAACCGATTATGGAGAAACGTCGCCGAGCTCGCATTAAT CACTGCCTCAACGAACTGAAGTCCCTTATCCTGGAGGCGATGAAAAAAGA CCCGGCTCGTCATACCAAACTGGAGAAGGCCGACATACTTGAGATGACGG TGAAGCATCTGCAGTCGGTGCAGCGCCAGCAGCTCAACATGGCCATCCAA TCGGATCCCAGCGTTGTCCAGAAGTTCAAGACGGGATTCGTTGAGTGCGC GGAGGAGGTGAACCGCTATGTAAGCCAAATGGATGGCATCGATACCGGTG TTCGTCAGCGGCTCAGCGCCCATCTTAACCAGTGTGCCAATAGTCTGGAG CAGATCGGTTCGATGAGCAACTTCAGCAATGGATACCGTGGTGGCTTGTT TCCCGCCACAGCTGTCACGGCTGCTCCCACTCCGCTGTTTCCCTCGTTGC CGCAGGACTTGAACAACAACAGCCGCACGGAGTCATCGGCTCCGGCCATC CAAATGGGTGGACTTCAGCTAATTCCCTCCCGCCTGCCCTCGGGAGAGTT TGCCCTCATCATGCCGAACACAGGTTCCGCTGCTCCGCCTCCGGGACCCT TTGCCTGGCCAGGATCTGCAGCGGGAGTCGCAGCTGGAACAGCCAGTGCC GCCTTGGCCAGCATTGCCAATCCCACACATCTAAATGACTATACACAGAG CTTCAGGATGAGCGCGTTCAGCAAACCGGTCAATACCTCAGTTCCGGCCA ATCTTCCGGAAAACCTCATCCACACACTGCCCGGCCAAACGCAGCTGCCG GTGAAGAACAGCACAAGCCCACCGCTGAGCCCAATCTCCTCCATCTCCAG CCACTGCGAGGAGTCCCGGGCTGCCTCGCCCACCGTGGATGTGATGAGCA AGCACAGTTTCGCCGGCGTCTTCTCAACTCCGCCACCAACCAGCGCGGAG ACCTCCTTCAACACCAGCGGATCCCTCAACTTGAGTGCCGGAAGCCACGA CAGCAGCGGATGCTCGCGACCGCTGGCCCACTTGCAGCAACAGCAAGTGA GCTCCACCAGCGGAATCGCCAAGCGCGACAGGGAGGCGGAGGCCGAGTCC AGCGACTGCTCCCTGGACGAGCCCTCGTCCAAGAAATTCCTAGCTGGCGC CATCGAAAAGTCGAGCTCCGCTTGGAGGCCGTGGTAGATCAACCGCACAG GCCACTTCTATGTTACGTTTATACATTGTTAATTTATTTCATTGCAATTT TTTCAAAGATCACTTCAATGCTTTAGAACCCCATTAAGTTTCAACGATTT CTATATGTTTTTATGTATCCCCGTTTCGCTTTCTTCATTTTAAGTTCAGC TGTGATTTTGTATATTTTTTGTGTAGTTCTCGTTTAAGCGCTTTATACGA CTATTATGTAGTTCATTAAATAATTATGTTCTTTAATGTTTCATTAACTG CTCAAGTATTTAAACAATTAAACGTGTTTCTATTTAAGTTATGTAGTTTT CATTGTATAGCGTTTATCATTAGGTCATTCACGTTTCTATATTAGTGTTT TAATTTAACGATTGTAATTTTAACTTTTAGGTAATGCAAAATTCGATGGA GTGAAAATAATGATAATAAAAAAAAAATGCTGCAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 4116508..4118039 | 2033..502 | 7630 | 99.9 | Minus |
chr2R | 21145070 | chr2R | 4119459..4119863 | 405..1 | 2010 | 99.8 | Minus |
chr2R | 21145070 | chr2R | 4119135..4119232 | 501..404 | 490 | 100 | Minus |
chr3L | 24539361 | chr3L | 8669622..8669702 | 502..582 | 210 | 84 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 8228961..8230502 | 2043..502 | 7695 | 99.9 | Minus |
2R | 25286936 | 2R | 8231923..8232327 | 405..1 | 2025 | 100 | Minus |
2R | 25286936 | 2R | 8231599..8231696 | 501..404 | 490 | 100 | Minus |
3L | 28110227 | 3L | 8677605..8677685 | 502..582 | 210 | 84 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 8230160..8231701 | 2043..502 | 7695 | 99.9 | Minus |
2R | 25260384 | 2R | 8233122..8233526 | 405..1 | 2025 | 100 | Minus |
2R | 25260384 | 2R | 8232798..8232895 | 501..404 | 490 | 100 | Minus |
3L | 28103327 | 3L | 8670705..8670785 | 502..582 | 210 | 83.9 | Plus |
3L | 28103327 | 3L | 8670475..8670567 | 409..501 | 150 | 77.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
ZAM | 8435 | ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). | 6742..6955 | 1943..1738 | 200 | 61.8 | Minus |
Dtei\I-element | 5386 | Dtei\I-element DTEII 5386bp | 2843..3007 | 1954..1794 | 138 | 59.5 | Minus |
I-element | 5371 | I-element DMIFACA 5371bp Derived from M14954 (g157749) (Rel. 44, Last updated, Version 2). | 2881..2984 | 1896..1794 | 138 | 64.2 | Minus |
rover | 7318 | rover ROVER 7318bp | 5227..5580 | 1947..1607 | 129 | 56.2 | Minus |
blood | 7410 | blood BLOOD 7410bp | 1573..1939 | 1980..1626 | 129 | 53.9 | Minus |
Idefix | 7411 | Idefix DME9736 7411bp Derived from AJ009736 (e1371475) (Rel. 58, Last updated, Version 1). | 1516..1676 | 1977..1801 | 126 | 59.6 | Minus |
gypsy9 | 5349 | gypsy9 GYPSY9 5349bp | 4197..4241 | 1663..1619 | 117 | 73.3 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 4116508..4118039 | 502..2033 | 99 | <- | Minus |
chr2R | 4119135..4119230 | 406..501 | 100 | <- | Minus |
chr2R | 4119459..4119863 | 1..405 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
dpn-RA | 1..1308 | 280..1587 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
dpn-RA | 1..1308 | 280..1587 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
dpn-RA | 1..1308 | 280..1587 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
dpn-RA | 1..1308 | 280..1587 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
dpn-RA | 1..1308 | 280..1587 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
dpn-RA | 1..2033 | 1..2033 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
dpn-RA | 1..2033 | 1..2033 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
dpn-RA | 4..2036 | 1..2033 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
dpn-RA | 1..2033 | 1..2033 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
dpn-RA | 4..2036 | 1..2033 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 8228971..8230502 | 502..2033 | 100 | <- | Minus |
2R | 8231599..8231694 | 406..501 | 100 | <- | Minus |
2R | 8231923..8232327 | 1..405 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 8228971..8230502 | 502..2033 | 100 | <- | Minus |
2R | 8231599..8231694 | 406..501 | 100 | <- | Minus |
2R | 8231923..8232327 | 1..405 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 8228971..8230502 | 502..2033 | 100 | <- | Minus |
2R | 8231599..8231694 | 406..501 | 100 | <- | Minus |
2R | 8231923..8232327 | 1..405 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 4116476..4118007 | 502..2033 | 100 | <- | Minus |
arm_2R | 4119104..4119199 | 406..501 | 100 | <- | Minus |
arm_2R | 4119428..4119832 | 1..405 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 8230170..8231701 | 502..2033 | 100 | <- | Minus |
2R | 8232798..8232893 | 406..501 | 100 | <- | Minus |
2R | 8233122..8233526 | 1..405 | 100 | Minus |
Translation from 279 to 1586
> RE34993.pep MDYKNDINSDDDFDCSNGYSDSYGSNGRMSNPNGLSKAELRKTNKPIMEK RRRARINHCLNELKSLILEAMKKDPARHTKLEKADILEMTVKHLQSVQRQ QLNMAIQSDPSVVQKFKTGFVECAEEVNRYVSQMDGIDTGVRQRLSAHLN QCANSLEQIGSMSNFSNGYRGGLFPATAVTAAPTPLFPSLPQDLNNNSRT ESSAPAIQMGGLQLIPSRLPSGEFALIMPNTGSAAPPPGPFAWPGSAAGV AAGTASAALASIANPTHLNDYTQSFRMSAFSKPVNTSVPANLPENLIHTL PGQTQLPVKNSTSPPLSPISSISSHCEESRAASPTVDVMSKHSFAGVFST PPPTSAETSFNTSGSLNLSAGSHDSSGCSRPLAHLQQQQVSSTSGIAKRD REAEAESSDCSLDEPSSKKFLAGAIEKSSSAWRPW*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF12602-PA | 441 | GF12602-PA | 1..441 | 1..435 | 1770 | 85.4 | Plus |
Dana\GF24345-PA | 346 | GF24345-PA | 33..226 | 41..231 | 382 | 45.4 | Plus |
Dana\GF14690-PA | 510 | GF14690-PA | 51..175 | 41..157 | 251 | 45.1 | Plus |
Dana\GF16796-PA | 205 | GF16796-PA | 14..134 | 39..157 | 243 | 38.8 | Plus |
Dana\GF18225-PA | 200 | GF18225-PA | 12..141 | 39..159 | 234 | 36.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG10662-PA | 435 | GG10662-PA | 1..435 | 1..435 | 2283 | 98.4 | Plus |
Dere\GG14338-PA | 339 | GG14338-PA | 32..220 | 41..231 | 392 | 46.8 | Plus |
Dere\GG21149-PA | 509 | GG21149-PA | 51..175 | 41..157 | 252 | 44.4 | Plus |
Dere\GG11450-PA | 205 | GG11450-PA | 14..134 | 39..157 | 245 | 38.8 | Plus |
Dere\GG12207-PA | 195 | GG12207-PA | 12..142 | 39..159 | 231 | 35.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH20825-PA | 456 | GH20825-PA | 1..456 | 1..435 | 1442 | 70.1 | Plus |
Dgri\GH10835-PA | 523 | GH10835-PA | 19..170 | 18..152 | 253 | 42.5 | Plus |
Dgri\GH19452-PA | 217 | GH19452-PA | 14..135 | 39..157 | 247 | 41 | Plus |
Dgri\GH18148-PA | 210 | GH18148-PA | 12..141 | 39..159 | 235 | 36.2 | Plus |
Dgri\GH19458-PA | 207 | GH19458-PA | 1..128 | 29..158 | 204 | 36.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
dpn-PA | 435 | CG8704-PA | 1..435 | 1..435 | 2244 | 100 | Plus |
h-PB | 337 | CG6494-PB | 32..219 | 41..231 | 411 | 47 | Plus |
h-PA | 337 | CG6494-PA | 32..219 | 41..231 | 411 | 47 | Plus |
E(spl)mgamma-HLH-PA | 205 | CG8333-PA | 14..134 | 39..157 | 244 | 38.8 | Plus |
Sidpn-PA | 507 | CG10446-PA | 51..507 | 41..435 | 238 | 24.9 | Plus |
E(spl)mbeta-HLH-PA | 195 | CG14548-PA | 12..142 | 39..159 | 225 | 35.9 | Plus |
E(spl)m7-HLH-PA | 186 | CG8361-PA | 12..125 | 39..158 | 211 | 37.5 | Plus |
Hey-PA | 425 | CG11194-PA | 74..248 | 14..191 | 206 | 33.7 | Plus |
E(spl)mdelta-HLH-PA | 173 | CG8328-PA | 16..135 | 41..158 | 197 | 37.5 | Plus |
E(spl)m3-HLH-PA | 224 | CG8346-PA | 10..143 | 39..158 | 192 | 33.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI20925-PA | 473 | GI20925-PA | 1..473 | 1..435 | 1302 | 66.8 | Plus |
Dmoj\GI12920-PA | 368 | GI12920-PA | 32..237 | 41..231 | 384 | 43.5 | Plus |
Dmoj\GI17350-PA | 528 | GI17350-PA | 51..175 | 41..157 | 250 | 43.6 | Plus |
Dmoj\GI24686-PA | 217 | GI24686-PA | 14..135 | 39..157 | 240 | 37.7 | Plus |
Dmoj\GI22910-PA | 210 | GI22910-PA | 12..142 | 39..159 | 225 | 35.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL10878-PA | 439 | GL10878-PA | 1..439 | 1..435 | 1749 | 78.6 | Plus |
Dper\GL10333-PA | 354 | GL10333-PA | 41..229 | 41..233 | 384 | 46.2 | Plus |
Dper\GL18909-PA | 497 | GL18909-PA | 52..176 | 41..157 | 257 | 45.1 | Plus |
Dper\GL21815-PA | 214 | GL21815-PA | 14..134 | 39..157 | 241 | 38 | Plus |
Dper\GL22021-PA | 200 | GL22021-PA | 12..142 | 39..159 | 225 | 35.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA21268-PA | 450 | GA21268-PA | 1..450 | 1..435 | 1780 | 81.5 | Plus |
Dpse\GA19636-PA | 354 | GA19636-PA | 41..229 | 41..233 | 384 | 46.2 | Plus |
Dpse\GA10322-PA | 497 | GA10322-PA | 52..176 | 41..157 | 256 | 45.1 | Plus |
Dpse\GA20996-PA | 214 | GA20996-PA | 14..134 | 39..157 | 241 | 38 | Plus |
Dpse\GA13073-PA | 200 | GA13073-PA | 12..142 | 39..159 | 225 | 35.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM20707-PA | 435 | GM20707-PA | 1..435 | 1..435 | 2298 | 99.1 | Plus |
Dsec\GM25080-PA | 337 | GM25080-PA | 32..219 | 41..231 | 392 | 47 | Plus |
Dsec\GM17313-PA | 507 | GM17313-PA | 51..175 | 41..157 | 252 | 44.4 | Plus |
Dsec\GM10294-PA | 205 | GM10294-PA | 14..134 | 39..157 | 245 | 38.8 | Plus |
Dsec\GM10206-PA | 195 | GM10206-PA | 12..142 | 39..159 | 233 | 36.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD15288-PA | 435 | GD15288-PA | 1..435 | 1..435 | 2300 | 99.1 | Plus |
Dsim\h-PA | 337 | GD14118-PA | 32..219 | 41..231 | 392 | 47 | Plus |
Dsim\GD24173-PA | 507 | GD24173-PA | 51..175 | 41..157 | 252 | 44.4 | Plus |
Dsim\HLHmgamma-PA | 205 | GD21258-PA | 14..134 | 39..157 | 245 | 38.8 | Plus |
Dsim\HLHmbeta-PA | 195 | GD18157-PA | 12..142 | 39..159 | 231 | 35.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ20653-PA | 555 | GJ20653-PA | 138..555 | 43..435 | 1248 | 66.1 | Plus |
Dvir\h-PA | 379 | GJ13064-PA | 39..247 | 41..231 | 374 | 43.3 | Plus |
Dvir\GJ16129-PA | 515 | GJ16129-PA | 51..176 | 41..157 | 262 | 44.4 | Plus |
Dvir\GJ23903-PA | 217 | GJ23903-PA | 14..135 | 39..157 | 239 | 37.7 | Plus |
Dvir\GJ23323-PA | 209 | GJ23323-PA | 12..141 | 39..159 | 235 | 36.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK15770-PA | 465 | GK15770-PA | 1..465 | 1..435 | 1496 | 73.4 | Plus |
Dwil\h-PA | 380 | GK16728-PA | 32..230 | 41..231 | 371 | 44.9 | Plus |
Dwil\GK24825-PA | 514 | GK24825-PA | 54..189 | 41..167 | 251 | 43.1 | Plus |
Dwil\GK14455-PA | 209 | GK14455-PA | 14..135 | 39..157 | 248 | 38.5 | Plus |
Dwil\GK14459-PA | 200 | GK14459-PA | 1..130 | 29..158 | 221 | 38.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE23198-PA | 435 | GE23198-PA | 1..435 | 1..435 | 2282 | 98.2 | Plus |
Dyak\GE20765-PA | 338 | GE20765-PA | 32..220 | 41..231 | 392 | 46.8 | Plus |
Dyak\GE13222-PA | 507 | GE13222-PA | 51..175 | 41..157 | 252 | 44.4 | Plus |
Dyak\HLHmgamma-PA | 205 | GE23644-PA | 14..134 | 39..157 | 245 | 38.8 | Plus |
Dyak\HLHmbeta-PA | 195 | GE10652-PA | 12..142 | 39..159 | 234 | 36.6 | Plus |
Translation from 279 to 1586
> RE34993.hyp MDYKNDINSDDDFDCSNGYSDSYGSNGRMSNPNGLSKAELRKTNKPIMEK RRRARINHCLNELKSLILEAMKKDPARHTKLEKADILEMTVKHLQSVQRQ QLNMAIQSDPSVVQKFKTGFVECAEEVNRYVSQMDGIDTGVRQRLSAHLN QCANSLEQIGSMSNFSNGYRGGLFPATAVTAAPTPLFPSLPQDLNNNSRT ESSAPAIQMGGLQLIPSRLPSGEFALIMPNTGSAAPPPGPFAWPGSAAGV AAGTASAALASIANPTHLNDYTQSFRMSAFSKPVNTSVPANLPENLIHTL PGQTQLPVKNSTSPPLSPISSISSHCEESRAASPTVDVMSKHSFAGVFST PPPTSAETSFNTSGSLNLSAGSHDSSGCSRPLAHLQQQQVSSTSGIAKRD REAEAESSDCSLDEPSSKKFLAGAIEKSSSAWRPW*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
dpn-PA | 435 | CG8704-PA | 1..435 | 1..435 | 2244 | 100 | Plus |
h-PB | 337 | CG6494-PB | 32..219 | 41..231 | 411 | 47 | Plus |
h-PA | 337 | CG6494-PA | 32..219 | 41..231 | 411 | 47 | Plus |
E(spl)mgamma-HLH-PA | 205 | CG8333-PA | 14..134 | 39..157 | 244 | 38.8 | Plus |
Side-PA | 507 | CG10446-PA | 51..507 | 41..435 | 238 | 24.9 | Plus |