Clone RE34993 Report

Search the DGRC for RE34993

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:349
Well:93
Vector:pFlc-1
Associated Gene/Transcriptdpn-RA
Protein status:RE34993.pep: gold
Preliminary Size:1569
Sequenced Size:2049

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8704 2001-12-14 Blastp of sequenced clone
CG8704 2002-01-01 Sim4 clustering to Release 2
CG8704 2003-01-01 Sim4 clustering to Release 3
dpn 2008-04-29 Release 5.5 accounting
dpn 2008-08-15 Release 5.9 accounting
dpn 2008-12-18 5.12 accounting

Clone Sequence Records

RE34993.complete Sequence

2049 bp (2049 high quality bases) assembled on 2001-12-14

GenBank Submission: AY071330

> RE34993.complete
AGTATCCTTTTGGCATCTCGCGAGCGCGGTCGTCTGCCGCTCTCCTTTGA
ATGAACATTTAAAATACTATTCTATACGATTCGATAACCAGAACGATCTT
TAACGCGTACCGCTTGTTAAGTTTTTGTTGTTCGGACATTACTAAGAAGT
ACGTGCAATAATTGTTATAACTATTTTCGTACTCGAACCAAAGTTATTGT
GTTGTGAAAAAGACCAAATCGAAATCGAACTATCTTGGATTATCTCCCAC
TTGGATATACAAATTAAAATCGTTACAAAATGGATTACAAAAACGATATT
AATTCCGACGACGATTTCGACTGCTCCAACGGCTATAGCGACAGCTATGG
CTCCAATGGACGCATGTCCAATCCCAATGGATTGTCAAAAGCAGAACTTA
GAAAGACCAACAAACCGATTATGGAGAAACGTCGCCGAGCTCGCATTAAT
CACTGCCTCAACGAACTGAAGTCCCTTATCCTGGAGGCGATGAAAAAAGA
CCCGGCTCGTCATACCAAACTGGAGAAGGCCGACATACTTGAGATGACGG
TGAAGCATCTGCAGTCGGTGCAGCGCCAGCAGCTCAACATGGCCATCCAA
TCGGATCCCAGCGTTGTCCAGAAGTTCAAGACGGGATTCGTTGAGTGCGC
GGAGGAGGTGAACCGCTATGTAAGCCAAATGGATGGCATCGATACCGGTG
TTCGTCAGCGGCTCAGCGCCCATCTTAACCAGTGTGCCAATAGTCTGGAG
CAGATCGGTTCGATGAGCAACTTCAGCAATGGATACCGTGGTGGCTTGTT
TCCCGCCACAGCTGTCACGGCTGCTCCCACTCCGCTGTTTCCCTCGTTGC
CGCAGGACTTGAACAACAACAGCCGCACGGAGTCATCGGCTCCGGCCATC
CAAATGGGTGGACTTCAGCTAATTCCCTCCCGCCTGCCCTCGGGAGAGTT
TGCCCTCATCATGCCGAACACAGGTTCCGCTGCTCCGCCTCCGGGACCCT
TTGCCTGGCCAGGATCTGCAGCGGGAGTCGCAGCTGGAACAGCCAGTGCC
GCCTTGGCCAGCATTGCCAATCCCACACATCTAAATGACTATACACAGAG
CTTCAGGATGAGCGCGTTCAGCAAACCGGTCAATACCTCAGTTCCGGCCA
ATCTTCCGGAAAACCTCATCCACACACTGCCCGGCCAAACGCAGCTGCCG
GTGAAGAACAGCACAAGCCCACCGCTGAGCCCAATCTCCTCCATCTCCAG
CCACTGCGAGGAGTCCCGGGCTGCCTCGCCCACCGTGGATGTGATGAGCA
AGCACAGTTTCGCCGGCGTCTTCTCAACTCCGCCACCAACCAGCGCGGAG
ACCTCCTTCAACACCAGCGGATCCCTCAACTTGAGTGCCGGAAGCCACGA
CAGCAGCGGATGCTCGCGACCGCTGGCCCACTTGCAGCAACAGCAAGTGA
GCTCCACCAGCGGAATCGCCAAGCGCGACAGGGAGGCGGAGGCCGAGTCC
AGCGACTGCTCCCTGGACGAGCCCTCGTCCAAGAAATTCCTAGCTGGCGC
CATCGAAAAGTCGAGCTCCGCTTGGAGGCCGTGGTAGATCAACCGCACAG
GCCACTTCTATGTTACGTTTATACATTGTTAATTTATTTCATTGCAATTT
TTTCAAAGATCACTTCAATGCTTTAGAACCCCATTAAGTTTCAACGATTT
CTATATGTTTTTATGTATCCCCGTTTCGCTTTCTTCATTTTAAGTTCAGC
TGTGATTTTGTATATTTTTTGTGTAGTTCTCGTTTAAGCGCTTTATACGA
CTATTATGTAGTTCATTAAATAATTATGTTCTTTAATGTTTCATTAACTG
CTCAAGTATTTAAACAATTAAACGTGTTTCTATTTAAGTTATGTAGTTTT
CATTGTATAGCGTTTATCATTAGGTCATTCACGTTTCTATATTAGTGTTT
TAATTTAACGATTGTAATTTTAACTTTTAGGTAATGCAAAATTCGATGGA
GTGAAAATAATGATAATAAAAAAAAAATGCTGCAAAAAAAAAAAAAAAA

RE34993.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:45:46
Subject Length Description Subject Range Query Range Score Percent Strand
dpn-RA 2185 dpn-RA 153..2185 1..2033 10165 100 Plus
hairy-RA 2380 hairy-RA 631..804 409..582 360 80.4 Plus
hairy-RB 2380 hairy-RB 631..804 409..582 360 80.4 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 04:56:53
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 4116508..4118039 2033..502 7630 99.9 Minus
chr2R 21145070 chr2R 4119459..4119863 405..1 2010 99.8 Minus
chr2R 21145070 chr2R 4119135..4119232 501..404 490 100 Minus
chr3L 24539361 chr3L 8669622..8669702 502..582 210 84 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:51:27 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 04:56:50
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8228961..8230502 2043..502 7695 99.9 Minus
2R 25286936 2R 8231923..8232327 405..1 2025 100 Minus
2R 25286936 2R 8231599..8231696 501..404 490 100 Minus
3L 28110227 3L 8677605..8677685 502..582 210 84 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:12:17
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 8230160..8231701 2043..502 7695 99.9 Minus
2R 25260384 2R 8233122..8233526 405..1 2025 100 Minus
2R 25260384 2R 8232798..8232895 501..404 490 100 Minus
3L 28103327 3L 8670705..8670785 502..582 210 83.9 Plus
3L 28103327 3L 8670475..8670567 409..501 150 77.4 Plus
Blast to na_te.dros performed 2019-03-16 04:56:51
Subject Length Description Subject Range Query Range Score Percent Strand
ZAM 8435 ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). 6742..6955 1943..1738 200 61.8 Minus
Dtei\I-element 5386 Dtei\I-element DTEII 5386bp 2843..3007 1954..1794 138 59.5 Minus
I-element 5371 I-element DMIFACA 5371bp Derived from M14954 (g157749) (Rel. 44, Last updated, Version 2). 2881..2984 1896..1794 138 64.2 Minus
rover 7318 rover ROVER 7318bp 5227..5580 1947..1607 129 56.2 Minus
blood 7410 blood BLOOD 7410bp 1573..1939 1980..1626 129 53.9 Minus
Idefix 7411 Idefix DME9736 7411bp Derived from AJ009736 (e1371475) (Rel. 58, Last updated, Version 1). 1516..1676 1977..1801 126 59.6 Minus
gypsy9 5349 gypsy9 GYPSY9 5349bp 4197..4241 1663..1619 117 73.3 Minus

RE34993.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 04:57:36 Download gff for RE34993.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 4116508..4118039 502..2033 99 <- Minus
chr2R 4119135..4119230 406..501 100 <- Minus
chr2R 4119459..4119863 1..405 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:11:32 Download gff for RE34993.complete
Subject Subject Range Query Range Percent Splice Strand
dpn-RA 1..1308 280..1587 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:12:55 Download gff for RE34993.complete
Subject Subject Range Query Range Percent Splice Strand
dpn-RA 1..1308 280..1587 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:46:24 Download gff for RE34993.complete
Subject Subject Range Query Range Percent Splice Strand
dpn-RA 1..1308 280..1587 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:37:05 Download gff for RE34993.complete
Subject Subject Range Query Range Percent Splice Strand
dpn-RA 1..1308 280..1587 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:55:01 Download gff for RE34993.complete
Subject Subject Range Query Range Percent Splice Strand
dpn-RA 1..1308 280..1587 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:43:57 Download gff for RE34993.complete
Subject Subject Range Query Range Percent Splice Strand
dpn-RA 1..2033 1..2033 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:12:54 Download gff for RE34993.complete
Subject Subject Range Query Range Percent Splice Strand
dpn-RA 1..2033 1..2033 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:46:24 Download gff for RE34993.complete
Subject Subject Range Query Range Percent Splice Strand
dpn-RA 4..2036 1..2033 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:37:05 Download gff for RE34993.complete
Subject Subject Range Query Range Percent Splice Strand
dpn-RA 1..2033 1..2033 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:55:01 Download gff for RE34993.complete
Subject Subject Range Query Range Percent Splice Strand
dpn-RA 4..2036 1..2033 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:57:36 Download gff for RE34993.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8228971..8230502 502..2033 100 <- Minus
2R 8231599..8231694 406..501 100 <- Minus
2R 8231923..8232327 1..405 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:57:36 Download gff for RE34993.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8228971..8230502 502..2033 100 <- Minus
2R 8231599..8231694 406..501 100 <- Minus
2R 8231923..8232327 1..405 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:57:36 Download gff for RE34993.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8228971..8230502 502..2033 100 <- Minus
2R 8231599..8231694 406..501 100 <- Minus
2R 8231923..8232327 1..405 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:46:24 Download gff for RE34993.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4116476..4118007 502..2033 100 <- Minus
arm_2R 4119104..4119199 406..501 100 <- Minus
arm_2R 4119428..4119832 1..405 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:14:39 Download gff for RE34993.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8230170..8231701 502..2033 100 <- Minus
2R 8232798..8232893 406..501 100 <- Minus
2R 8233122..8233526 1..405 100   Minus

RE34993.pep Sequence

Translation from 279 to 1586

> RE34993.pep
MDYKNDINSDDDFDCSNGYSDSYGSNGRMSNPNGLSKAELRKTNKPIMEK
RRRARINHCLNELKSLILEAMKKDPARHTKLEKADILEMTVKHLQSVQRQ
QLNMAIQSDPSVVQKFKTGFVECAEEVNRYVSQMDGIDTGVRQRLSAHLN
QCANSLEQIGSMSNFSNGYRGGLFPATAVTAAPTPLFPSLPQDLNNNSRT
ESSAPAIQMGGLQLIPSRLPSGEFALIMPNTGSAAPPPGPFAWPGSAAGV
AAGTASAALASIANPTHLNDYTQSFRMSAFSKPVNTSVPANLPENLIHTL
PGQTQLPVKNSTSPPLSPISSISSHCEESRAASPTVDVMSKHSFAGVFST
PPPTSAETSFNTSGSLNLSAGSHDSSGCSRPLAHLQQQQVSSTSGIAKRD
REAEAESSDCSLDEPSSKKFLAGAIEKSSSAWRPW*

RE34993.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:20:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12602-PA 441 GF12602-PA 1..441 1..435 1770 85.4 Plus
Dana\GF24345-PA 346 GF24345-PA 33..226 41..231 382 45.4 Plus
Dana\GF14690-PA 510 GF14690-PA 51..175 41..157 251 45.1 Plus
Dana\GF16796-PA 205 GF16796-PA 14..134 39..157 243 38.8 Plus
Dana\GF18225-PA 200 GF18225-PA 12..141 39..159 234 36.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:20:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10662-PA 435 GG10662-PA 1..435 1..435 2283 98.4 Plus
Dere\GG14338-PA 339 GG14338-PA 32..220 41..231 392 46.8 Plus
Dere\GG21149-PA 509 GG21149-PA 51..175 41..157 252 44.4 Plus
Dere\GG11450-PA 205 GG11450-PA 14..134 39..157 245 38.8 Plus
Dere\GG12207-PA 195 GG12207-PA 12..142 39..159 231 35.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:20:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20825-PA 456 GH20825-PA 1..456 1..435 1442 70.1 Plus
Dgri\GH10835-PA 523 GH10835-PA 19..170 18..152 253 42.5 Plus
Dgri\GH19452-PA 217 GH19452-PA 14..135 39..157 247 41 Plus
Dgri\GH18148-PA 210 GH18148-PA 12..141 39..159 235 36.2 Plus
Dgri\GH19458-PA 207 GH19458-PA 1..128 29..158 204 36.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:16:01
Subject Length Description Subject Range Query Range Score Percent Strand
dpn-PA 435 CG8704-PA 1..435 1..435 2244 100 Plus
h-PB 337 CG6494-PB 32..219 41..231 411 47 Plus
h-PA 337 CG6494-PA 32..219 41..231 411 47 Plus
E(spl)mgamma-HLH-PA 205 CG8333-PA 14..134 39..157 244 38.8 Plus
Sidpn-PA 507 CG10446-PA 51..507 41..435 238 24.9 Plus
E(spl)mbeta-HLH-PA 195 CG14548-PA 12..142 39..159 225 35.9 Plus
E(spl)m7-HLH-PA 186 CG8361-PA 12..125 39..158 211 37.5 Plus
Hey-PA 425 CG11194-PA 74..248 14..191 206 33.7 Plus
E(spl)mdelta-HLH-PA 173 CG8328-PA 16..135 41..158 197 37.5 Plus
E(spl)m3-HLH-PA 224 CG8346-PA 10..143 39..158 192 33.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:20:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20925-PA 473 GI20925-PA 1..473 1..435 1302 66.8 Plus
Dmoj\GI12920-PA 368 GI12920-PA 32..237 41..231 384 43.5 Plus
Dmoj\GI17350-PA 528 GI17350-PA 51..175 41..157 250 43.6 Plus
Dmoj\GI24686-PA 217 GI24686-PA 14..135 39..157 240 37.7 Plus
Dmoj\GI22910-PA 210 GI22910-PA 12..142 39..159 225 35.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:20:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10878-PA 439 GL10878-PA 1..439 1..435 1749 78.6 Plus
Dper\GL10333-PA 354 GL10333-PA 41..229 41..233 384 46.2 Plus
Dper\GL18909-PA 497 GL18909-PA 52..176 41..157 257 45.1 Plus
Dper\GL21815-PA 214 GL21815-PA 14..134 39..157 241 38 Plus
Dper\GL22021-PA 200 GL22021-PA 12..142 39..159 225 35.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:20:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21268-PA 450 GA21268-PA 1..450 1..435 1780 81.5 Plus
Dpse\GA19636-PA 354 GA19636-PA 41..229 41..233 384 46.2 Plus
Dpse\GA10322-PA 497 GA10322-PA 52..176 41..157 256 45.1 Plus
Dpse\GA20996-PA 214 GA20996-PA 14..134 39..157 241 38 Plus
Dpse\GA13073-PA 200 GA13073-PA 12..142 39..159 225 35.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:20:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20707-PA 435 GM20707-PA 1..435 1..435 2298 99.1 Plus
Dsec\GM25080-PA 337 GM25080-PA 32..219 41..231 392 47 Plus
Dsec\GM17313-PA 507 GM17313-PA 51..175 41..157 252 44.4 Plus
Dsec\GM10294-PA 205 GM10294-PA 14..134 39..157 245 38.8 Plus
Dsec\GM10206-PA 195 GM10206-PA 12..142 39..159 233 36.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:20:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15288-PA 435 GD15288-PA 1..435 1..435 2300 99.1 Plus
Dsim\h-PA 337 GD14118-PA 32..219 41..231 392 47 Plus
Dsim\GD24173-PA 507 GD24173-PA 51..175 41..157 252 44.4 Plus
Dsim\HLHmgamma-PA 205 GD21258-PA 14..134 39..157 245 38.8 Plus
Dsim\HLHmbeta-PA 195 GD18157-PA 12..142 39..159 231 35.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:20:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20653-PA 555 GJ20653-PA 138..555 43..435 1248 66.1 Plus
Dvir\h-PA 379 GJ13064-PA 39..247 41..231 374 43.3 Plus
Dvir\GJ16129-PA 515 GJ16129-PA 51..176 41..157 262 44.4 Plus
Dvir\GJ23903-PA 217 GJ23903-PA 14..135 39..157 239 37.7 Plus
Dvir\GJ23323-PA 209 GJ23323-PA 12..141 39..159 235 36.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:20:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15770-PA 465 GK15770-PA 1..465 1..435 1496 73.4 Plus
Dwil\h-PA 380 GK16728-PA 32..230 41..231 371 44.9 Plus
Dwil\GK24825-PA 514 GK24825-PA 54..189 41..167 251 43.1 Plus
Dwil\GK14455-PA 209 GK14455-PA 14..135 39..157 248 38.5 Plus
Dwil\GK14459-PA 200 GK14459-PA 1..130 29..158 221 38.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:20:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23198-PA 435 GE23198-PA 1..435 1..435 2282 98.2 Plus
Dyak\GE20765-PA 338 GE20765-PA 32..220 41..231 392 46.8 Plus
Dyak\GE13222-PA 507 GE13222-PA 51..175 41..157 252 44.4 Plus
Dyak\HLHmgamma-PA 205 GE23644-PA 14..134 39..157 245 38.8 Plus
Dyak\HLHmbeta-PA 195 GE10652-PA 12..142 39..159 234 36.6 Plus

RE34993.hyp Sequence

Translation from 279 to 1586

> RE34993.hyp
MDYKNDINSDDDFDCSNGYSDSYGSNGRMSNPNGLSKAELRKTNKPIMEK
RRRARINHCLNELKSLILEAMKKDPARHTKLEKADILEMTVKHLQSVQRQ
QLNMAIQSDPSVVQKFKTGFVECAEEVNRYVSQMDGIDTGVRQRLSAHLN
QCANSLEQIGSMSNFSNGYRGGLFPATAVTAAPTPLFPSLPQDLNNNSRT
ESSAPAIQMGGLQLIPSRLPSGEFALIMPNTGSAAPPPGPFAWPGSAAGV
AAGTASAALASIANPTHLNDYTQSFRMSAFSKPVNTSVPANLPENLIHTL
PGQTQLPVKNSTSPPLSPISSISSHCEESRAASPTVDVMSKHSFAGVFST
PPPTSAETSFNTSGSLNLSAGSHDSSGCSRPLAHLQQQQVSSTSGIAKRD
REAEAESSDCSLDEPSSKKFLAGAIEKSSSAWRPW*

RE34993.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:10:39
Subject Length Description Subject Range Query Range Score Percent Strand
dpn-PA 435 CG8704-PA 1..435 1..435 2244 100 Plus
h-PB 337 CG6494-PB 32..219 41..231 411 47 Plus
h-PA 337 CG6494-PA 32..219 41..231 411 47 Plus
E(spl)mgamma-HLH-PA 205 CG8333-PA 14..134 39..157 244 38.8 Plus
Side-PA 507 CG10446-PA 51..507 41..435 238 24.9 Plus