Clone RE35042 Report

Search the DGRC for RE35042

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:350
Well:42
Vector:pFlc-1
Associated Gene/TranscriptnAChRbeta1-RA
Protein status:RE35042.pep: gold
Sequenced Size:2454

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
nAcRbeta-64B-RA 2010-11-11 Gleaning Pick By Joe Carlson

Clone Sequence Records

RE35042.complete Sequence

2454 bp assembled on 2011-01-03

GenBank Submission: BT125991.1

> RE35042.complete
CTTAATCCGCACCCAAACTGACGGCTCCAGTTCAAGACGGAAAGTTCGGA
AAGAAAATTCCCTGAAAAATCAGTGAAAATTAAGAAAATATTCATAAAGC
ACTAGCTAAAATTAAGAAAAGCTTGAGATAAGTTTTGGGGCGTGGGCCAG
CGAAATCCCAATGCGAAAAAATATAAATTAGCCATGTCCCTGGAGTAAGT
GAAAAGTGTGGAAAAATCATGGAGTCTTCCTGCAAATCCTGGCTGTTGTG
CAGCATCCTGGTGCTTGTGGCCTTTTCGTTGGTCAGTGCATCCGAAGATG
AAGAGCGCTTGGTGCGTGACCTCTTTCGAGGCTACAATAAACTCATACGA
CCCGTACAGAATATGACACAAAAAGTTGGAGTAAGATTTGGTTTGGCGTT
CGTACAGCTAATCAATGTCAATGAGAAAAATCAAATTATGAAATCAAACG
TTTGGTTACGTTTGGTTTGGTACGACTACCAGCTGCAGTGGGATGAGGCC
GACTACGGCGGCATCGGGGTGTTGCGTCTGCCCCCCGACAAGGTTTGGAA
GCCGGACATTGTGCTCTTCAATAATGCCGATGGCAACTACGAGGTGCGCT
ACAAGTCCAACGTGCTGATTTATCCCACGGGAGAGGTCCTGTGGGTTCCT
CCGGCCATTTACCAGAGCTCCTGCACCATCGATGTGACCTACTTCCCCTT
CGATCAGCAGACCTGTATCATGAAGTTCGGATCGTGGACCTTCAATGGAG
ATCAGGTCTCATTGGCGCTCTATAATAATAAGAACTTTGTGGATCTGTCG
GATTACTGGAAGTCCGGCACCTGGGACATTATAGAGGTGCCCGCCTATCT
GAACGTTTACGAGGGCGATAGCAACCACCCCACGGAGACTGACATCACAT
TCTACATCATCATCCGGCGAAAGACTCTCTTCTACACTGTGAATTTAATT
CTGCCCACGGTGCTGATTTCCTTCCTCTGCGTCTTGGTATTTTACCTGCC
AGCCGAGGCCGGCGAAAAGGTTACGCTCGGAATTAGCATTTTGCTGTCAC
TGGTTGTGTTCCTGTTGCTGGTGTCGAAGATTCTGCCACCAACGTCGCTG
GTGCTGCCACTGATCGCCAAATATTTGCTGTTCACCTTCATCATGAACAC
GGTTTCCATCCTGGTGACCGTGATCATCATCAACTGGAACTTCCGGGGGC
CGCGCACCCACCGCATGCCCATGTACATCCGCTCCATCTTCCTGCACTAC
CTGCCCGCCTTCCTATTCATGAAGCGCCCTCGGAAGACCCGCCTGCGCTG
GATGATGGAGATGCCCGGAATGAGCATGCCCGCCCATCCTCATCCCTCCT
ACGGCTCGCCAGCGGAGCTGCCCAAGCATATCAGCGCCATCGGCGGCAAG
CAATCCAAGATGGAGGTCATGGAGTTGTCCGACCTGCATCACCCCAACTG
CAAGATCAACCGCAAGGTCAACAGTGGTGGGGAACTTGGCCTGGGTGACG
GTTGTCGCCGGGAGAGCGAGTCCTCCGATTCCATCCTGCTCTCTCCGGAG
GCCAGCAAGGCCACCGAGGCGGTGGAGTTCATTGCCGAGCACTTGCGGAA
CGAGGATCTGTACATTCAGACCCGCGAAGATTGGAAGTACGTGGCCATGG
TGATCGATCGCTTGCAACTATACATCTTCTTCATTGTGACCACGGCCGGA
ACGGTGGGCATTCTGATGGATGCTCCGCATATTTTCGAGTACGTTGATCA
GGATCGCATCATCGAGATTTACAGGGGAAAGTAAGCGAGTGAGGACTTGG
AGCAGCCGGGGGCTGATTGAAATGGTTAACAGCATTGCAAACGCAACAAT
AATAAGCAAACGAGGTATTGAGACAGAGGAAAACAATGAAAATTGCAACA
ATTAATGCGGATTTTTAGATTTTAATAATTAATGAACACTAAACGATACT
TGCTTGAGCAGAATTAACACCTAAAATAACTAACTAATATTAACTTTTTG
GTAAACACACGAATTGGAACACAGAACACACACTAAGCAGACGTCGAGTA
AAACAAATACGCAAAATAACTCACCAGCAACAAATGTTAAACAAATAAAT
CAAAACAAAGAAAACCAACCTAGTGGAATTGTGAGTAAATTTATAATTTT
TAAAACGAACTTAGCTAATATGGACATCTAGAATGAAGTTTAGTTTAAGA
GCAATAAATAGCAAACAAACGTTTCCCAAATAATTTGTTATGTTGTGCCA
GGAACTTAATCATAAGTAATCGCAGTTTTACGCATAAGATTTAAGAATGG
AATACATCCCGAATCAATTTGTAAATGCTTCTCACACGATCGCAGCTAGC
AAAAAGATCGACTTAATCGTAGGCTCCGAAGATCCGAAGATCCGGAGACC
CGGAGCCTACATGAAACCAATAAAAATGCAAAGTTAATCAAAAAAAAAAA
AAAA

RE35042.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-17 01:24:29
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 4434556..4435377 1617..2438 4110 100 Plus
chr3L 24539361 chr3L 4433872..4434473 1018..1619 2980 99.7 Plus
chr3L 24539361 chr3L 4432997..4433443 575..1021 2145 98.7 Plus
chr3L 24539361 chr3L 4432687..4432841 420..574 775 100 Plus
chr3L 24539361 chr3L 4428956..4429107 131..282 760 100 Plus
chr3L 24539361 chr3L 4431766..4431903 282..419 690 100 Plus
chr3L 24539361 chr3L 4428763..4428894 1..132 660 100 Plus
chr3R 27901430 chr3R 20310806..20310882 681..757 235 87 Plus
chrX 22417052 chrX 8198449..8198528 730..651 190 82.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2019-03-17 01:24:27
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4435172..4435993 1617..2438 4110 100 Plus
3L 28110227 3L 4434488..4435089 1018..1619 3010 100 Plus
3L 28110227 3L 4433615..4434061 575..1021 2235 100 Plus
3L 28110227 3L 4433305..4433459 420..574 775 100 Plus
3L 28110227 3L 4429564..4429715 131..282 760 100 Plus
3L 28110227 3L 4432385..4432522 282..419 690 100 Plus
3L 28110227 3L 4429371..4429502 1..132 660 100 Plus
3R 32079331 3R 24487529..24487605 681..757 235 87 Plus
X 23542271 X 8306670..8306749 730..651 190 82.5 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 23:04:37
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 4435172..4435993 1617..2438 4110 100 Plus
3L 28103327 3L 4434488..4435089 1018..1619 3010 100 Plus
3L 28103327 3L 4433615..4434061 575..1021 2235 100 Plus
3L 28103327 3L 4433305..4433459 420..574 775 100 Plus
3L 28103327 3L 4429564..4429715 131..282 760 100 Plus
3L 28103327 3L 4432385..4432522 282..419 690 100 Plus
3L 28103327 3L 4429371..4429502 1..132 660 100 Plus
3R 31820162 3R 24228360..24228436 681..757 235 87 Plus
X 23527363 X 8314768..8314847 730..651 190 82.5 Minus
Blast to na_te.dros performed 2019-03-17 01:24:28
Subject Length Description Subject Range Query Range Score Percent Strand
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 5322..5702 1822..2183 130 52.7 Plus
I-element 5371 I-element DMIFACA 5371bp Derived from M14954 (g157749) (Rel. 44, Last updated, Version 2). 77..275 1964..2159 123 56.4 Plus
McClintock 6450 McClintock McCLINTOCK 6450bp 5766..5836 51..120 118 66.7 Plus

RE35042.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-17 01:25:34 Download gff for RE35042.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 4428763..4428894 1..132 100 -> Plus
chr3L 4428958..4429107 133..282 100 -> Plus
chr3L 4431767..4431903 283..419 100 -> Plus
chr3L 4432687..4432841 420..574 100 -> Plus
chr3L 4432997..4433441 575..1019 98 -> Plus
chr3L 4433874..4434473 1020..1619 99 -> Plus
chr3L 4434559..4435377 1620..2439 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-01-05 09:01:11 Download gff for RE35042.complete
Subject Subject Range Query Range Percent Splice Strand
nAcRbeta-64B-RA 1..1566 219..1784 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 20:38:04 Download gff for RE35042.complete
Subject Subject Range Query Range Percent Splice Strand
nAcRbeta-64B-RA 1..1566 219..1784 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:57:17 Download gff for RE35042.complete
Subject Subject Range Query Range Percent Splice Strand
nAChRbeta1-RA 1..1566 219..1784 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-05 09:01:11 Download gff for RE35042.complete
Subject Subject Range Query Range Percent Splice Strand
nAcRbeta-64B-RA 2..2439 1..2439 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 20:38:04 Download gff for RE35042.complete
Subject Subject Range Query Range Percent Splice Strand
nAcRbeta-64B-RA 23..2460 1..2438 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:57:17 Download gff for RE35042.complete
Subject Subject Range Query Range Percent Splice Strand
nAChRbeta1-RA 23..2460 1..2438 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 01:25:34 Download gff for RE35042.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4429371..4429502 1..132 100 -> Plus
3L 4429566..4429715 133..282 100 -> Plus
3L 4432386..4432522 283..419 100 -> Plus
3L 4433305..4433459 420..574 100 -> Plus
3L 4433615..4434059 575..1019 100 -> Plus
3L 4434490..4435089 1020..1619 100 -> Plus
3L 4435175..4435993 1620..2439 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 01:25:34 Download gff for RE35042.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4429371..4429502 1..132 100 -> Plus
3L 4429566..4429715 133..282 100 -> Plus
3L 4432386..4432522 283..419 100 -> Plus
3L 4433305..4433459 420..574 100 -> Plus
3L 4433615..4434059 575..1019 100 -> Plus
3L 4434490..4435089 1020..1619 100 -> Plus
3L 4435175..4435993 1620..2439 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 01:25:34 Download gff for RE35042.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4429371..4429502 1..132 100 -> Plus
3L 4429566..4429715 133..282 100 -> Plus
3L 4432386..4432522 283..419 100 -> Plus
3L 4433305..4433459 420..574 100 -> Plus
3L 4433615..4434059 575..1019 100 -> Plus
3L 4434490..4435089 1020..1619 100 -> Plus
3L 4435175..4435993 1620..2439 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 20:38:04 Download gff for RE35042.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4433615..4434059 575..1019 100 -> Plus
arm_3L 4429371..4429502 1..132 100 -> Plus
arm_3L 4429566..4429715 133..282 100 -> Plus
arm_3L 4432386..4432522 283..419 100 -> Plus
arm_3L 4433305..4433459 420..574 100 -> Plus
arm_3L 4434490..4435089 1020..1619 100 -> Plus
arm_3L 4435175..4435993 1620..2439 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:53:56 Download gff for RE35042.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4433615..4434059 575..1019 100 -> Plus
3L 4434490..4435089 1020..1619 100 -> Plus
3L 4435175..4435993 1620..2439 99   Plus
3L 4429371..4429502 1..132 100 -> Plus
3L 4433305..4433459 420..574 100 -> Plus
3L 4429566..4429715 133..282 100 -> Plus
3L 4432386..4432522 283..419 100 -> Plus

RE35042.pep Sequence

Translation from 218 to 1783

> RE35042.pep
MESSCKSWLLCSILVLVAFSLVSASEDEERLVRDLFRGYNKLIRPVQNMT
QKVGVRFGLAFVQLINVNEKNQIMKSNVWLRLVWYDYQLQWDEADYGGIG
VLRLPPDKVWKPDIVLFNNADGNYEVRYKSNVLIYPTGEVLWVPPAIYQS
SCTIDVTYFPFDQQTCIMKFGSWTFNGDQVSLALYNNKNFVDLSDYWKSG
TWDIIEVPAYLNVYEGDSNHPTETDITFYIIIRRKTLFYTVNLILPTVLI
SFLCVLVFYLPAEAGEKVTLGISILLSLVVFLLLVSKILPPTSLVLPLIA
KYLLFTFIMNTVSILVTVIIINWNFRGPRTHRMPMYIRSIFLHYLPAFLF
MKRPRKTRLRWMMEMPGMSMPAHPHPSYGSPAELPKHISAIGGKQSKMEV
MELSDLHHPNCKINRKVNSGGELGLGDGCRRESESSDSILLSPEASKATE
AVEFIAEHLRNEDLYIQTREDWKYVAMVIDRLQLYIFFIVTTAGTVGILM
DAPHIFEYVDQDRIIEIYRGK*

RE35042.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 21:56:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF25072-PA 521 GF25072-PA 1..521 1..521 2737 98.1 Plus
Dana\GF20710-PA 519 GF20710-PA 3..488 7..507 1033 42.7 Plus
Dana\GF20712-PA 750 GF20712-PA 183..733 7..521 1030 42.6 Plus
Dana\GF20752-PA 567 GF20752-PA 30..543 22..507 987 41.8 Plus
Dana\GF22443-PA 817 GF22443-PA 9..347 23..354 942 54.3 Plus
Dana\GF22443-PA 817 GF22443-PA 727..791 443..507 172 47.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 21:56:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15229-PA 521 GG15229-PA 1..521 1..521 2774 99.8 Plus
Dere\GG12341-PA 519 GG12341-PA 4..488 8..507 1030 42.6 Plus
Dere\GG12342-PA 574 GG12342-PA 3..557 7..521 1026 42.3 Plus
Dere\GG11295-PA 573 GG11295-PA 36..549 22..507 988 42 Plus
Dere\GG13154-PA 417 GG13154-PA 6..346 22..354 944 53.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 21:56:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22330-PA 557 GH22330-PA 6..539 2..516 1082 42.4 Plus
Dgri\GH15682-PA 223 GH15682-PA 1..196 74..269 1053 99.5 Plus
Dgri\GH18787-PA 571 GH18787-PA 3..554 7..521 1045 42.3 Plus
Dgri\GH18785-PA 519 GH18785-PA 26..488 24..507 1029 43.8 Plus
Dgri\GH18824-PA 572 GH18824-PA 35..548 22..507 991 41.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:35:12
Subject Length Description Subject Range Query Range Score Percent Strand
nAChRbeta1-PA 521 CG11348-PA 1..521 1..521 2739 100 Plus
nAChRalpha1-PC 567 CG5610-PC 3..550 7..521 1070 42.8 Plus
nAChRalpha1-PA 567 CG5610-PA 3..550 7..521 1070 42.8 Plus
nAChRalpha1-PB 597 CG5610-PB 3..550 7..521 1070 42.8 Plus
nAChRalpha4-PC 539 CG12414-PC 6..521 22..516 1066 43.9 Plus
nAChRalpha4-PG 499 CG12414-PG 6..481 22..516 1064 44.6 Plus
nAChRalpha4-PH 539 CG12414-PH 6..521 22..516 1061 43.3 Plus
nAChRbeta2-PA 519 CG6798-PA 4..488 8..507 1025 42.6 Plus
nAChRalpha2-PB 576 CG6844-PB 26..552 10..507 990 42.2 Plus
nAChRalpha2-PA 576 CG6844-PA 26..552 10..507 990 42.2 Plus
nAChRalpha3-PC 795 CG2302-PC 11..359 13..354 980 54.2 Plus
nAChRalpha3-PB 795 CG2302-PB 11..359 13..354 980 54.2 Plus
nAChRalpha5-PH 808 CG32975-PH 292..805 7..505 899 37.5 Plus
nAChRalpha5-PD 808 CG32975-PD 292..805 7..505 899 37.5 Plus
nAChRalpha5-PB 808 CG32975-PB 292..805 7..505 899 37.5 Plus
nAChRalpha7-PF 560 CG32538-PF 42..556 9..504 873 36.4 Plus
nAChRalpha7-PD 560 CG32538-PD 42..556 9..504 873 36.4 Plus
nAChRalpha7-PA 560 CG32538-PA 42..556 9..504 873 36.4 Plus
nAChRalpha7-PE 564 CG32538-PE 42..556 9..504 873 36.4 Plus
nAChRalpha6-PH 494 CG4128-PH 10..491 12..505 861 38.1 Plus
nAChRalpha6-PA 494 CG4128-PA 10..491 12..505 858 37.9 Plus
nAChRalpha6-PG 494 CG4128-PG 10..491 12..505 857 37.9 Plus
nAChRalpha6-PB 494 CG4128-PB 10..491 12..505 857 37.9 Plus
nAChRalpha6-PC 494 CG4128-PC 10..491 12..505 854 37.7 Plus
nAChRalpha6-PD 509 CG4128-PD 10..506 12..505 832 36.8 Plus
nAChRalpha6-PE 523 CG4128-PE 10..520 12..505 827 36.4 Plus
nAChRbeta2-PB 304 CG6798-PB 4..278 8..269 682 50 Plus
nAChRalpha4-PF 371 CG12414-PF 14..353 191..516 591 40.8 Plus
nAChRalpha4-PD 371 CG12414-PD 14..353 191..516 591 40.8 Plus
nAChRalpha4-PE 384 CG12414-PE 27..366 191..516 591 40.8 Plus
nAChRbeta3-PA 441 CG11822-PA 52..363 29..351 311 25.8 Plus
nAChRalpha3-PC 795 CG2302-PC 705..769 443..507 168 47.7 Plus
nAChRalpha3-PB 795 CG2302-PB 705..769 443..507 168 47.7 Plus
GluClalpha-PF 349 CG7535-PF 8..339 8..332 163 21 Plus
GluClalpha-PK 447 CG7535-PK 8..302 8..293 163 22 Plus
GluClalpha-PM 456 CG7535-PM 8..302 8..293 163 22 Plus
GluClalpha-PO 455 CG7535-PO 8..340 8..333 162 21.2 Plus
GluClalpha-PH 447 CG7535-PH 8..302 8..293 159 21.7 Plus
GluClalpha-PP 456 CG7535-PP 8..302 8..293 159 21.7 Plus
GluClalpha-PI 456 CG7535-PI 8..302 8..293 159 21.7 Plus
GluClalpha-PN 463 CG7535-PN 8..302 8..293 159 21.7 Plus
GluClalpha-PL 448 CG7535-PL 8..303 8..293 157 22.2 Plus
GluClalpha-PJ 457 CG7535-PJ 8..303 8..293 157 22.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 21:56:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12728-PA 521 GI12728-PA 1..521 1..521 2696 96.5 Plus
Dmoj\GI23970-PA 557 GI23970-PA 6..539 2..516 1079 42 Plus
Dmoj\GI22677-PA 570 GI22677-PA 3..553 7..521 1045 42.2 Plus
Dmoj\GI22676-PA 519 GI22676-PA 26..488 24..507 1017 43.6 Plus
Dmoj\GI10081-PA 573 GI10081-PA 19..549 5..507 995 41.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 21:56:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18409-PA 213 GL18409-PA 1..203 68..270 1078 98.5 Plus
Dper\GL21978-PA 574 GL21978-PA 3..557 7..521 1059 42.3 Plus
Dper\GL21977-PA 519 GL21977-PA 4..488 8..507 1032 42.7 Plus
Dper\GL21880-PA 479 GL21880-PA 6..461 22..516 1008 43.7 Plus
Dper\GL19905-PA 594 GL19905-PA 25..568 23..507 1000 41.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 21:57:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10937-PA 522 GA10937-PA 4..522 3..521 2696 97.1 Plus
Dpse\GA27331-PA 571 GA27331-PA 3..554 7..521 1062 42.5 Plus
Dpse\GA19869-PA 519 GA19869-PA 4..488 8..507 1032 42.7 Plus
Dpse\GA19901-PA 574 GA19901-PA 37..550 22..507 981 41.6 Plus
Dpse\GA28361-PA 798 GA28361-PA 25..363 23..354 941 54.3 Plus
Dpse\GA28361-PA 798 GA28361-PA 708..772 443..507 172 47.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 21:57:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14660-PA 521 GM14660-PA 1..521 1..521 2769 99.6 Plus
Dsec\GM23481-PA 519 GM23481-PA 4..488 8..507 1031 42.6 Plus
Dsec\GM23483-PA 571 GM23483-PA 3..554 7..521 1028 42.5 Plus
Dsec\GM26601-PA 576 GM26601-PA 39..552 22..507 988 42 Plus
Dsec\GM22494-PA 447 GM22494-PA 20..376 4..354 954 51.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 21:57:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13845-PA 503 GD13845-PA 1..380 1..379 1696 90 Plus
Dsim\GD18288-PA 519 GD18288-PA 4..488 8..507 1031 42.6 Plus
Dsim\GD18289-PA 572 GD18289-PA 3..555 7..521 1021 42.7 Plus
Dsim\GD21103-PA 576 GD21103-PA 39..552 22..507 988 42 Plus
Dsim\GD23953-PA 546 GD23953-PA 43..543 20..505 901 38.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 21:57:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12715-PA 521 GJ12715-PA 1..521 1..521 2602 96.2 Plus
Dvir\GJ23403-PA 519 GJ23403-PA 26..488 24..507 1031 43.8 Plus
Dvir\GJ23404-PA 733 GJ23404-PA 167..716 7..521 1028 40.3 Plus
Dvir\GJ23817-PA 573 GJ23817-PA 19..549 5..507 993 41.4 Plus
Dvir\GJ19023-PA 808 GJ19023-PA 11..354 18..354 944 53.8 Plus
Dvir\GJ19023-PA 808 GJ19023-PA 718..782 443..507 172 47.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 21:57:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16583-PA 521 GK16583-PA 1..521 1..521 2693 96.9 Plus
Dwil\GK12171-PA 564 GK12171-PA 22..546 6..516 1087 43 Plus
Dwil\GK22820-PA 519 GK22820-PA 26..488 24..507 1028 43.6 Plus
Dwil\GK22821-PA 578 GK22821-PA 3..561 7..521 1021 42.2 Plus
Dwil\GK22341-PA 572 GK22341-PA 35..548 22..507 987 41.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 21:57:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21448-PA 521 GE21448-PA 1..521 1..521 2770 99.6 Plus
Dyak\GE10794-PA 519 GE10794-PA 4..488 8..507 1030 42.6 Plus
Dyak\GE10796-PA 570 GE10796-PA 3..553 7..521 1030 42.6 Plus
Dyak\GE23490-PA 570 GE23490-PA 33..546 22..507 988 42 Plus
Dyak\GE17461-PA 802 GE17461-PA 11..359 13..354 952 54.2 Plus
Dyak\GE17461-PA 802 GE17461-PA 712..776 443..507 172 47.7 Plus

RE35042.hyp Sequence

Translation from 218 to 1783

> RE35042.hyp
MESSCKSWLLCSILVLVAFSLVSASEDEERLVRDLFRGYNKLIRPVQNMT
QKVGVRFGLAFVQLINVNEKNQIMKSNVWLRLVWYDYQLQWDEADYGGIG
VLRLPPDKVWKPDIVLFNNADGNYEVRYKSNVLIYPTGEVLWVPPAIYQS
SCTIDVTYFPFDQQTCIMKFGSWTFNGDQVSLALYNNKNFVDLSDYWKSG
TWDIIEVPAYLNVYEGDSNHPTETDITFYIIIRRKTLFYTVNLILPTVLI
SFLCVLVFYLPAEAGEKVTLGISILLSLVVFLLLVSKILPPTSLVLPLIA
KYLLFTFIMNTVSILVTVIIINWNFRGPRTHRMPMYIRSIFLHYLPAFLF
MKRPRKTRLRWMMEMPGMSMPAHPHPSYGSPAELPKHISAIGGKQSKMEV
MELSDLHHPNCKINRKVNSGGELGLGDGCRRESESSDSILLSPEASKATE
AVEFIAEHLRNEDLYIQTREDWKYVAMVIDRLQLYIFFIVTTAGTVGILM
DAPHIFEYVDQDRIIEIYRGK*

RE35042.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:58:40
Subject Length Description Subject Range Query Range Score Percent Strand
nAChRbeta1-PA 521 CG11348-PA 1..521 1..521 2739 100 Plus
nAChRalpha1-PC 567 CG5610-PC 3..550 7..521 1070 42.8 Plus
nAChRalpha1-PA 567 CG5610-PA 3..550 7..521 1070 42.8 Plus
nAChRalpha4-PC 539 CG12414-PC 6..521 22..516 1066 43.9 Plus
nAChRalpha4-PG 499 CG12414-PG 6..481 22..516 1064 44.6 Plus