BDGP Sequence Production Resources |
Search the DGRC for RE35104
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 351 |
Well: | 4 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Pis-RA |
Protein status: | RE35104.pep: gold |
Preliminary Size: | 832 |
Sequenced Size: | 1389 |
Gene | Date | Evidence |
---|---|---|
CG9245 | 2002-01-01 | Sim4 clustering to Release 2 |
CG9245 | 2002-03-28 | Blastp of sequenced clone |
CG9245 | 2003-01-01 | Sim4 clustering to Release 3 |
Pis | 2008-04-29 | Release 5.5 accounting |
Pis | 2008-08-15 | Release 5.9 accounting |
Pis | 2008-12-18 | 5.12 accounting |
1389 bp (1389 high quality bases) assembled on 2002-03-28
GenBank Submission: AY094866
> RE35104.complete AATGGTCACGCTGCGGTCACACCAGATACAGCAAATTCTGTTTCCACTGT TTTTTCTGCAGCACTTTTGGCATTTAATTGGATAAAAACAAGCCGCAAAG CTAGAAGATCGCAAAATAAACGAAAAACCAAAGTGGCGAAACAAAATGAC AATTGCCGAGCACGATAACGTCTTCATCTTTGTGCCAAATCTGATCGGCT ACGCCCGCATCGTTCTGGCCCTGATCGCCTTCTGGTTCATGTCCACCAAC TATGTGATCTCCGGCTGGTGTTATGTAACCTCCGCCCTCCTGGACGCCGT CGATGGACAAGCAGCCCGAGCCTTTAACCAAAGCACTCGCTTTGGCGCCA TGCTAGACCAGTTGACCGATCGCTGCGGCACCACCGGCCTACTGGTCACC CTGGCCTACTTCTATCCCCGGTACATGTTCTGGTTCCAGCTGTCCATCGC CATCGACGTGGCCTGTCACTGGCTCTTCATGCAGACGAGCGTTGTGGTCG GACGCAGCTCGCACAAGGTGAATGACAACTTCATAATGCGATTGTATTAC CAGAAGGACATACTCACATTCATGTGCTGCGTCAATGAGCTGTTTTACGT GTGCTTGTACCTCTTGCATTTCACCTACGGCCCGCTGATATTCGGCGCAT CGCTCTTCAAGATACTCGCCTTCCTCACGGGTCCCTTCGCCGTGCTCAAG GCCCTGATCTCGGTGATGCACGCCTACGTGGCGGGCATCGATCTGGCGGC CGTGGATGTACGCGAGCGGCAGGAGCGGCGCCAGAAGTCGGAGCCGGTGA GCGGCAAGAAAGTGGAGTGAAAATGGGATGCGATCCGGGATCAATCTTCC AGCGACAGTTCTATCAACAGAAAGTACTAAATGAAACAACTCTTGATTCC AAGCTAAAAAAACAGAATTTTGAAGACGAATTGCGATCAGATGAAATATG GGCATTAGGCAACCAAATAGGCCGTAGTAGGAATTTAATTTATTTTTAAT GCGCTATTGCAATGATTGTTGATTTTATTTGATATATTTTAGTTAGACGG GTGGTGAAATCACCCGACAATTTGTATTTAATAGATTTTTGAATTGAAAT TTAAGCGATTCGTTCCAGTCAGTAGCTGTTGCATATTTATTTTGCCTTTA GTTAGCGTAGTTTACACGCTATATATGTATATATATGCCAATGCGTAAAT GCAGGCCGATATACTATGAATGAGTGTCTATTTCCAGGATTTATCTCACT GTGCACGTTTTGGGTTTGACTAACCACCTTGTCCCAGCAACTCTCTCAAT GTAACTAATGTATTTCTAATCGTAAGTTAAAGAATGTAATTGGAGACCTG CATGAAATATATACGACAAATGGAAAAGAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 15591267..15592002 | 1374..639 | 3665 | 99.9 | Minus |
chrX | 22417052 | chrX | 15593386..15593580 | 198..4 | 975 | 100 | Minus |
chrX | 22417052 | chrX | 15592325..15592479 | 487..333 | 775 | 100 | Minus |
chrX | 22417052 | chrX | 15592081..15592232 | 638..487 | 760 | 100 | Minus |
chrX | 22417052 | chrX | 15593000..15593136 | 333..197 | 670 | 99.3 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23542271 | X | 15701450..15702185 | 1374..639 | 3665 | 99.9 | Minus |
X | 23542271 | X | 15703569..15703763 | 198..4 | 975 | 100 | Minus |
X | 23542271 | X | 15702508..15702662 | 487..333 | 775 | 100 | Minus |
X | 23542271 | X | 15702264..15702415 | 638..487 | 760 | 100 | Minus |
X | 23542271 | X | 15703183..15703319 | 333..197 | 685 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23527363 | X | 15709548..15710283 | 1374..639 | 3665 | 99.8 | Minus |
X | 23527363 | X | 15711667..15711861 | 198..4 | 975 | 100 | Minus |
X | 23527363 | X | 15710606..15710760 | 487..333 | 775 | 100 | Minus |
X | 23527363 | X | 15710362..15710513 | 638..487 | 760 | 100 | Minus |
X | 23527363 | X | 15711281..15711417 | 333..197 | 685 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
HeT-A | 6083 | HeT-A DM06920 6083bp Derived from U06920.2 (Rel. 67, Last updated, Version 14). | 5971..6025 | 1192..1135 | 111 | 70.7 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 15592326..15592479 | 333..486 | 100 | <- | Minus |
chrX | 15593001..15593135 | 198..332 | 99 | <- | Minus |
chrX | 15593387..15593582 | 1..197 | 99 | Minus | |
chrX | 15591265..15592002 | 639..1378 | 99 | <- | Minus |
chrX | 15592081..15592232 | 487..638 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pis-RA | 1..675 | 146..820 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pis-RA | 1..675 | 146..820 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pis-RA | 1..675 | 146..820 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pis-RA | 1..675 | 146..820 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pis-RA | 1..675 | 146..820 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pis-RA | 1..1375 | 2..1378 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pis-RA | 1..1375 | 2..1378 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pis-RA | 5..1377 | 1..1373 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pis-RA | 1..1375 | 2..1378 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pis-RA | 5..1377 | 1..1373 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 15701448..15702185 | 639..1378 | 99 | <- | Minus |
X | 15702264..15702415 | 487..638 | 100 | <- | Minus |
X | 15702509..15702662 | 333..486 | 100 | <- | Minus |
X | 15703184..15703318 | 198..332 | 100 | <- | Minus |
X | 15703570..15703765 | 1..197 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 15701448..15702185 | 639..1378 | 99 | <- | Minus |
X | 15702264..15702415 | 487..638 | 100 | <- | Minus |
X | 15702509..15702662 | 333..486 | 100 | <- | Minus |
X | 15703184..15703318 | 198..332 | 100 | <- | Minus |
X | 15703570..15703765 | 1..197 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 15701448..15702185 | 639..1378 | 99 | <- | Minus |
X | 15702264..15702415 | 487..638 | 100 | <- | Minus |
X | 15702509..15702662 | 333..486 | 100 | <- | Minus |
X | 15703184..15703318 | 198..332 | 100 | <- | Minus |
X | 15703570..15703765 | 1..197 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 15595481..15596218 | 639..1378 | 99 | <- | Minus |
arm_X | 15596297..15596448 | 487..638 | 100 | <- | Minus |
arm_X | 15596542..15596695 | 333..486 | 100 | <- | Minus |
arm_X | 15597217..15597351 | 198..332 | 100 | <- | Minus |
arm_X | 15597603..15597798 | 1..197 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 15709546..15710283 | 639..1378 | 99 | <- | Minus |
X | 15710362..15710513 | 487..638 | 100 | <- | Minus |
X | 15710607..15710760 | 333..486 | 100 | <- | Minus |
X | 15711282..15711416 | 198..332 | 100 | <- | Minus |
X | 15711668..15711863 | 1..197 | 99 | Minus |
Translation from 145 to 819
> RE35104.hyp MTIAEHDNVFIFVPNLIGYARIVLALIAFWFMSTNYVISGWCYVTSALLD AVDGQAARAFNQSTRFGAMLDQLTDRCGTTGLLVTLAYFYPRYMFWFQLS IAIDVACHWLFMQTSVVVGRSSHKVNDNFIMRLYYQKDILTFMCCVNELF YVCLYLLHFTYGPLIFGASLFKILAFLTGPFAVLKALISVMHAYVAGIDL AAVDVRERQERRQKSEPVSGKKVE*
Translation from 145 to 819
> RE35104.pep MTIAEHDNVFIFVPNLIGYARIVLALIAFWFMSTNYVISGWCYVTSALLD AVDGQAARAFNQSTRFGAMLDQLTDRCGTTGLLVTLAYFYPRYMFWFQLS IAIDVACHWLFMQTSVVVGRSSHKVNDNFIMRLYYQKDILTFMCCVNELF YVCLYLLHFTYGPLIFGASLFKILAFLTGPFAVLKALISVMHAYVAGIDL AAVDVRERQERRQKSEPVSGKKVE*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF22242-PA | 225 | GF22242-PA | 1..225 | 1..224 | 1160 | 96.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG19382-PA | 224 | GG19382-PA | 1..224 | 1..224 | 1180 | 98.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH17635-PA | 225 | GH17635-PA | 1..225 | 1..224 | 1111 | 91.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Pis-PA | 224 | CG9245-PA | 1..224 | 1..224 | 1171 | 100 | Plus |
Pis-PB | 81 | CG9245-PB | 1..63 | 1..63 | 324 | 98.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI16073-PA | 225 | GI16073-PA | 1..225 | 1..224 | 1067 | 87.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL16524-PA | 226 | GL16524-PA | 1..226 | 1..224 | 1139 | 93.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA21640-PA | 226 | GA21640-PA | 1..226 | 1..224 | 1139 | 93.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM22537-PA | 224 | GM22537-PA | 1..224 | 1..224 | 1185 | 99.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD15785-PA | 224 | GD15785-PA | 1..224 | 1..224 | 1181 | 98.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ15718-PA | 225 | GJ15718-PA | 1..225 | 1..224 | 1113 | 90.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK15994-PA | 226 | GK15994-PA | 1..226 | 1..224 | 1094 | 89.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE16030-PA | 224 | GE16030-PA | 1..224 | 1..224 | 1176 | 98.2 | Plus |