Clone RE35104 Report

Search the DGRC for RE35104

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:351
Well:4
Vector:pFlc-1
Associated Gene/TranscriptPis-RA
Protein status:RE35104.pep: gold
Preliminary Size:832
Sequenced Size:1389

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9245 2002-01-01 Sim4 clustering to Release 2
CG9245 2002-03-28 Blastp of sequenced clone
CG9245 2003-01-01 Sim4 clustering to Release 3
Pis 2008-04-29 Release 5.5 accounting
Pis 2008-08-15 Release 5.9 accounting
Pis 2008-12-18 5.12 accounting

Clone Sequence Records

RE35104.complete Sequence

1389 bp (1389 high quality bases) assembled on 2002-03-28

GenBank Submission: AY094866

> RE35104.complete
AATGGTCACGCTGCGGTCACACCAGATACAGCAAATTCTGTTTCCACTGT
TTTTTCTGCAGCACTTTTGGCATTTAATTGGATAAAAACAAGCCGCAAAG
CTAGAAGATCGCAAAATAAACGAAAAACCAAAGTGGCGAAACAAAATGAC
AATTGCCGAGCACGATAACGTCTTCATCTTTGTGCCAAATCTGATCGGCT
ACGCCCGCATCGTTCTGGCCCTGATCGCCTTCTGGTTCATGTCCACCAAC
TATGTGATCTCCGGCTGGTGTTATGTAACCTCCGCCCTCCTGGACGCCGT
CGATGGACAAGCAGCCCGAGCCTTTAACCAAAGCACTCGCTTTGGCGCCA
TGCTAGACCAGTTGACCGATCGCTGCGGCACCACCGGCCTACTGGTCACC
CTGGCCTACTTCTATCCCCGGTACATGTTCTGGTTCCAGCTGTCCATCGC
CATCGACGTGGCCTGTCACTGGCTCTTCATGCAGACGAGCGTTGTGGTCG
GACGCAGCTCGCACAAGGTGAATGACAACTTCATAATGCGATTGTATTAC
CAGAAGGACATACTCACATTCATGTGCTGCGTCAATGAGCTGTTTTACGT
GTGCTTGTACCTCTTGCATTTCACCTACGGCCCGCTGATATTCGGCGCAT
CGCTCTTCAAGATACTCGCCTTCCTCACGGGTCCCTTCGCCGTGCTCAAG
GCCCTGATCTCGGTGATGCACGCCTACGTGGCGGGCATCGATCTGGCGGC
CGTGGATGTACGCGAGCGGCAGGAGCGGCGCCAGAAGTCGGAGCCGGTGA
GCGGCAAGAAAGTGGAGTGAAAATGGGATGCGATCCGGGATCAATCTTCC
AGCGACAGTTCTATCAACAGAAAGTACTAAATGAAACAACTCTTGATTCC
AAGCTAAAAAAACAGAATTTTGAAGACGAATTGCGATCAGATGAAATATG
GGCATTAGGCAACCAAATAGGCCGTAGTAGGAATTTAATTTATTTTTAAT
GCGCTATTGCAATGATTGTTGATTTTATTTGATATATTTTAGTTAGACGG
GTGGTGAAATCACCCGACAATTTGTATTTAATAGATTTTTGAATTGAAAT
TTAAGCGATTCGTTCCAGTCAGTAGCTGTTGCATATTTATTTTGCCTTTA
GTTAGCGTAGTTTACACGCTATATATGTATATATATGCCAATGCGTAAAT
GCAGGCCGATATACTATGAATGAGTGTCTATTTCCAGGATTTATCTCACT
GTGCACGTTTTGGGTTTGACTAACCACCTTGTCCCAGCAACTCTCTCAAT
GTAACTAATGTATTTCTAATCGTAAGTTAAAGAATGTAATTGGAGACCTG
CATGAAATATATACGACAAATGGAAAAGAAAAAAAAAAA

RE35104.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:18:52
Subject Length Description Subject Range Query Range Score Percent Strand
Pis-RA 1378 Pis-RA 3..1373 4..1374 6840 99.9 Plus
Pis-RB 756 Pis-RB 3..331 4..332 1645 100 Plus
Pis-RB 756 Pis-RB 607..756 333..482 750 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 05:32:41
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 15591267..15592002 1374..639 3665 99.9 Minus
chrX 22417052 chrX 15593386..15593580 198..4 975 100 Minus
chrX 22417052 chrX 15592325..15592479 487..333 775 100 Minus
chrX 22417052 chrX 15592081..15592232 638..487 760 100 Minus
chrX 22417052 chrX 15593000..15593136 333..197 670 99.3 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:51:31 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 05:32:40
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15701450..15702185 1374..639 3665 99.9 Minus
X 23542271 X 15703569..15703763 198..4 975 100 Minus
X 23542271 X 15702508..15702662 487..333 775 100 Minus
X 23542271 X 15702264..15702415 638..487 760 100 Minus
X 23542271 X 15703183..15703319 333..197 685 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:48:31
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 15709548..15710283 1374..639 3665 99.8 Minus
X 23527363 X 15711667..15711861 198..4 975 100 Minus
X 23527363 X 15710606..15710760 487..333 775 100 Minus
X 23527363 X 15710362..15710513 638..487 760 100 Minus
X 23527363 X 15711281..15711417 333..197 685 100 Minus
Blast to na_te.dros performed 2019-03-16 05:32:40
Subject Length Description Subject Range Query Range Score Percent Strand
HeT-A 6083 HeT-A DM06920 6083bp Derived from U06920.2 (Rel. 67, Last updated, Version 14). 5971..6025 1192..1135 111 70.7 Minus

RE35104.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 05:33:53 Download gff for RE35104.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 15592326..15592479 333..486 100 <- Minus
chrX 15593001..15593135 198..332 99 <- Minus
chrX 15593387..15593582 1..197 99   Minus
chrX 15591265..15592002 639..1378 99 <- Minus
chrX 15592081..15592232 487..638 100 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:11:37 Download gff for RE35104.complete
Subject Subject Range Query Range Percent Splice Strand
Pis-RA 1..675 146..820 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:23:27 Download gff for RE35104.complete
Subject Subject Range Query Range Percent Splice Strand
Pis-RA 1..675 146..820 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 08:27:54 Download gff for RE35104.complete
Subject Subject Range Query Range Percent Splice Strand
Pis-RA 1..675 146..820 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:59:48 Download gff for RE35104.complete
Subject Subject Range Query Range Percent Splice Strand
Pis-RA 1..675 146..820 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:05:01 Download gff for RE35104.complete
Subject Subject Range Query Range Percent Splice Strand
Pis-RA 1..675 146..820 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:50:22 Download gff for RE35104.complete
Subject Subject Range Query Range Percent Splice Strand
Pis-RA 1..1375 2..1378 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:23:27 Download gff for RE35104.complete
Subject Subject Range Query Range Percent Splice Strand
Pis-RA 1..1375 2..1378 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:27:54 Download gff for RE35104.complete
Subject Subject Range Query Range Percent Splice Strand
Pis-RA 5..1377 1..1373 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:59:48 Download gff for RE35104.complete
Subject Subject Range Query Range Percent Splice Strand
Pis-RA 1..1375 2..1378 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:05:01 Download gff for RE35104.complete
Subject Subject Range Query Range Percent Splice Strand
Pis-RA 5..1377 1..1373 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:33:53 Download gff for RE35104.complete
Subject Subject Range Query Range Percent Splice Strand
X 15701448..15702185 639..1378 99 <- Minus
X 15702264..15702415 487..638 100 <- Minus
X 15702509..15702662 333..486 100 <- Minus
X 15703184..15703318 198..332 100 <- Minus
X 15703570..15703765 1..197 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:33:53 Download gff for RE35104.complete
Subject Subject Range Query Range Percent Splice Strand
X 15701448..15702185 639..1378 99 <- Minus
X 15702264..15702415 487..638 100 <- Minus
X 15702509..15702662 333..486 100 <- Minus
X 15703184..15703318 198..332 100 <- Minus
X 15703570..15703765 1..197 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:33:53 Download gff for RE35104.complete
Subject Subject Range Query Range Percent Splice Strand
X 15701448..15702185 639..1378 99 <- Minus
X 15702264..15702415 487..638 100 <- Minus
X 15702509..15702662 333..486 100 <- Minus
X 15703184..15703318 198..332 100 <- Minus
X 15703570..15703765 1..197 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:27:54 Download gff for RE35104.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 15595481..15596218 639..1378 99 <- Minus
arm_X 15596297..15596448 487..638 100 <- Minus
arm_X 15596542..15596695 333..486 100 <- Minus
arm_X 15597217..15597351 198..332 100 <- Minus
arm_X 15597603..15597798 1..197 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:32:42 Download gff for RE35104.complete
Subject Subject Range Query Range Percent Splice Strand
X 15709546..15710283 639..1378 99 <- Minus
X 15710362..15710513 487..638 100 <- Minus
X 15710607..15710760 333..486 100 <- Minus
X 15711282..15711416 198..332 100 <- Minus
X 15711668..15711863 1..197 99   Minus

RE35104.hyp Sequence

Translation from 145 to 819

> RE35104.hyp
MTIAEHDNVFIFVPNLIGYARIVLALIAFWFMSTNYVISGWCYVTSALLD
AVDGQAARAFNQSTRFGAMLDQLTDRCGTTGLLVTLAYFYPRYMFWFQLS
IAIDVACHWLFMQTSVVVGRSSHKVNDNFIMRLYYQKDILTFMCCVNELF
YVCLYLLHFTYGPLIFGASLFKILAFLTGPFAVLKALISVMHAYVAGIDL
AAVDVRERQERRQKSEPVSGKKVE*

RE35104.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:38:22
Subject Length Description Subject Range Query Range Score Percent Strand
Pis-PA 224 CG9245-PA 1..224 1..224 1171 100 Plus
Pis-PB 81 CG9245-PB 1..63 1..63 324 98.4 Plus

RE35104.pep Sequence

Translation from 145 to 819

> RE35104.pep
MTIAEHDNVFIFVPNLIGYARIVLALIAFWFMSTNYVISGWCYVTSALLD
AVDGQAARAFNQSTRFGAMLDQLTDRCGTTGLLVTLAYFYPRYMFWFQLS
IAIDVACHWLFMQTSVVVGRSSHKVNDNFIMRLYYQKDILTFMCCVNELF
YVCLYLLHFTYGPLIFGASLFKILAFLTGPFAVLKALISVMHAYVAGIDL
AAVDVRERQERRQKSEPVSGKKVE*

RE35104.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 05:08:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22242-PA 225 GF22242-PA 1..225 1..224 1160 96.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 05:08:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19382-PA 224 GG19382-PA 1..224 1..224 1180 98.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 05:08:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17635-PA 225 GH17635-PA 1..225 1..224 1111 91.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:39:15
Subject Length Description Subject Range Query Range Score Percent Strand
Pis-PA 224 CG9245-PA 1..224 1..224 1171 100 Plus
Pis-PB 81 CG9245-PB 1..63 1..63 324 98.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 05:08:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16073-PA 225 GI16073-PA 1..225 1..224 1067 87.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 05:08:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16524-PA 226 GL16524-PA 1..226 1..224 1139 93.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 05:08:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21640-PA 226 GA21640-PA 1..226 1..224 1139 93.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 05:08:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22537-PA 224 GM22537-PA 1..224 1..224 1185 99.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 05:08:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15785-PA 224 GD15785-PA 1..224 1..224 1181 98.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 05:08:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15718-PA 225 GJ15718-PA 1..225 1..224 1113 90.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 05:08:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15994-PA 226 GK15994-PA 1..226 1..224 1094 89.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 05:08:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16030-PA 224 GE16030-PA 1..224 1..224 1176 98.2 Plus