Clone RE35182 Report

Search the DGRC for RE35182

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:351
Well:82
Vector:pFlc-1
Associated Gene/TranscriptOsi24-RA
Protein status:RE35182.pep: gold
Preliminary Size:1449
Sequenced Size:2641

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG15589 2002-01-01 Sim4 clustering to Release 2
CG15589 2002-05-17 Blastp of sequenced clone
CG15589 2003-01-01 Sim4 clustering to Release 3
CG15589 2008-04-29 Release 5.5 accounting
CG15589 2008-08-15 Release 5.9 accounting
CG15589 2008-12-18 5.12 accounting

Clone Sequence Records

RE35182.complete Sequence

2641 bp (2641 high quality bases) assembled on 2002-05-17

GenBank Submission: AY119131

> RE35182.complete
AGTCCAAATCTTCGCGAGCTGAAAGGCAGACGCAGACGCGCGAGTAAAGC
GGGAATATAAGTTTGCGATCCCGAGCCTCTGATTATAATAACTGCCAGAA
TACAGACTACAGTGGCGTGTGCTGCTCTAGTTCAAAGTGGGTATATTGTT
TGCAGAGGCTAAAACTCCGATGCAGTGAATCTAAGTGTTGTTAAAGTGAA
ACGAGCTGCAGCAATTGCATTGACAAAGGAAGTGAGCCAGTGAGTGAACG
GGTTTCGGCCAGCATTTTCACCAAGCTAAATCGGAGAGCCGACGCGGAGC
GGCAGTGAATGCAATTCCGATTTCGAAACATACAGAAACGAAAGTCTGCT
GAAGAAAGTTCTCCGCTGCCGAATGCAAAAATTTAATTGCCAGCCAGCCG
AGTGAACCAGAAACTCCTGCAGGAATTACAAGCTCCCCCGACTGCGAGAA
GAAAACTGAACCGAATCGAGTCGAGTCGAAGCGAAGCGAGAACCTTGGCA
TGCGAGTGCAGCTGCAAGGCGAAGGATAATGAAAATGGGTAGCCAGTACA
TCGACGGGGCGAAATTAAAAGCAAACAGCCACAGAAAGCGGCGATGCAGT
CCGCTGCTTTATGGAATTATCTTGCTCTGCAAAGTGGCGATGATACCGGC
AGCTGTTCCGGAATCGGAATTGGATGCAGGAGCCCTCTATAGTCAGCCCC
TCACTACGATGGCGGGACAGCCGCGCAACGATGACACATTCCGGCCCATC
CTACCCATCGACATCAGTCCGGAGTTCATTTCGAGGAATGTATTCACAAA
GTCGGGCCAGTACAGAGTGTTCCAGCCGGCGGAGAGCGAGAGTGATCTGC
GCTTGGCGGTGGCCATGCGTCGACGGAACTTTAAACACCCCTCGGATTCA
CCCAGAAAGCAGGAGTCCGAAAGTTCGGCAGCCGCTTTTAAAAACCAAAC
CATTACCTCTATCGACGCCGAACTAAAAGGTCTGGAGGATCTGCTCGTGG
ACTACGTGGAGCAGTTCTTCAGCAACGGCAGATATGAGCCCACTCCTGGT
TTGGTCCTGGCTCTTCAGCAGAACCACTCGCACCCACAATCTTATACTGG
CAAGCGCACCACCCGAAGCATTTTGGAGGACACCAACGTTGAGCTGAATG
TTCCAAGGGCTTTTGAAAGCGCCCGACTGCTTTTCTTTAGCGGTTTGAAG
AAGGTGATGTGGCCCATCTATATGGGTTTGCAAGTGCTGAAGAGCGTGCT
CTTCGCCATGTTCCTGCCAACCATCATCAGCAGTGTAAGCCGACTGATTG
GCAAGGGCATCACTTCCGGCTCGGCTGGGTCGGTGCCGTTGTTTATCCGC
CCCATTGAGCCGCCACAAGAACTGGACTTCCGGGACAACAGCATGAATTT
CGATGATGACAGCAAATTTTCCCTGGCGGACGAGGGCAAAACGCCAGCCG
GCTACGAGTACAATGCAGAGGCATCACAGCAGCAGGCGCAATATGCCCAG
GTCAATGGGAACTCGGTGAACCAGGCCACTTTGTCGCGCTATGGAGGTCA
GCAGATGATGCAGGACACCTATCTGAGTGCTCTGCAGAGCATTGGCGCTG
CCTCCTTCAAAAACTCCCAGAGCATGTCAGGATCCTTCAGCGCCGGAGCT
GGTGGCGGAGCTCCAGGAATGACGAAGAAACCAACGCCGGCCGTGATGAA
CACGTTCCAGAGCTTCCAGAAGGTGCCCAGCTCGTCGCTTTTGCTGTCCA
ACTATGACCCCTTCTACAGTCCACTATTGTCCCGCCTGGACTCGGTGTTT
GCCCAGCTCAAATTGAATCCGGAGAACGAAGCTTGCCGCGAGAAACTCAT
CTGCCTGATGTACGCCAACCCCGCGAAGTATGCTCCGTACAGCAACCTGG
TCTCAGCTCAACTCAGCAGGGAACTGAACGAGCTGCGGAAGCCTACTTCC
GACAACCCGGACATCCTGCGATTCTTCAAGTACATGCGAGCGGCGAAGGA
CGGTCAGGACGGCGTCGACTGCGACGAGTCCTTCGCCAAGTGCAAGGAGC
TGAAGGACCTCGAGAACCCGGCAATGCTGTCCACCTACAACGACATCAAC
AAACTGGTCCAGGCCCGCAAGCTGGCGTAGACGGGGTCTAAAGGTCTCGG
AGCCATCTCTCGGACGGTATGGGGTCGAGATGACAGCAAAGTTCGTGGGA
GTCACGTCAAAAGTCCGTCTGACGGATGCCTGCCTTCTGGGGATGGGCGG
TGTAATTATGCAAATCGTACTTTAGATAGGATAGCCTAGCCATATATAGA
GGTTCGTCAGACGGCAGCTGTCGGCGGCGGGTGGGGGTTGGTGCGCAGGG
GCAGGGACGGGGCTTCATTAATACGCTGTAAATAGAAAAGTTTGTTTCGT
AGTTTAATTAGCACCAGCACCAATTACTGGAGGATGCTGTTATTTTTAGC
CATTTAGCTGAATTTTAAGTATTTATTTCTAGCCTACGACTATTTTTAAA
CCTAACCCGACTATTTTTAACTATTTATTCTGTTGTTATTATGCGATTAG
TCAGCGAGCATTGTTCAATGTCCTTAAATTATTCAACAAAATCATGTTGT
ACCACCAGAAATAAACCAAACTTATTGAAAAAAAAAAAAAA

RE35182.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:05:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG15589.a 2967 CG15589.a 4..2633 1..2630 13150 100 Plus
CG15589-RA 2660 CG15589-RA 4..2633 1..2630 13150 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 19:46:48
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 2030018..2030762 450..1194 3725 100 Plus
chr3R 27901430 chr3R 2032621..2033330 1918..2627 3550 100 Plus
chr3R 27901430 chr3R 2031532..2031988 1464..1920 2285 100 Plus
chr3R 27901430 chr3R 2024465..2024915 1..451 2255 100 Plus
chr3R 27901430 chr3R 2031309..2031471 1306..1468 815 100 Plus
chr3R 27901430 chr3R 2031135..2031250 1192..1307 580 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:51:36 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 19:46:47
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6204366..6205110 450..1194 3725 100 Plus
3R 32079331 3R 6206969..6207681 1918..2630 3565 100 Plus
3R 32079331 3R 6205880..6206336 1464..1920 2285 100 Plus
3R 32079331 3R 6198813..6199263 1..451 2255 100 Plus
3R 32079331 3R 6205657..6205819 1306..1468 815 100 Plus
3R 32079331 3R 6205483..6205598 1192..1307 580 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:37:02
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 5945197..5945941 450..1194 3725 100 Plus
3R 31820162 3R 5947800..5948512 1918..2630 3565 100 Plus
3R 31820162 3R 5946711..5947167 1464..1920 2285 100 Plus
3R 31820162 3R 5939644..5940094 1..451 2255 100 Plus
3R 31820162 3R 5946488..5946650 1306..1468 815 100 Plus
3R 31820162 3R 5946314..5946429 1192..1307 580 100 Plus
Blast to na_te.dros performed on 2019-03-15 19:46:47 has no hits.

RE35182.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 19:47:27 Download gff for RE35182.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 2024465..2024915 1..451 100 -> Plus
chr3R 2030020..2030760 452..1192 100 -> Plus
chr3R 2031136..2031249 1193..1306 100 -> Plus
chr3R 2031310..2031471 1307..1468 100 -> Plus
chr3R 2031537..2031987 1469..1919 100 -> Plus
chr3R 2032623..2033330 1920..2627 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:11:41 Download gff for RE35182.complete
Subject Subject Range Query Range Percent Splice Strand
CG15589-RA 1..1602 529..2130 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:48:08 Download gff for RE35182.complete
Subject Subject Range Query Range Percent Splice Strand
CG15589-RA 1..1602 529..2130 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:57:45 Download gff for RE35182.complete
Subject Subject Range Query Range Percent Splice Strand
Osi24-RA 1..1602 529..2130 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:40:34 Download gff for RE35182.complete
Subject Subject Range Query Range Percent Splice Strand
CG15589-RA 1..1602 529..2130 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:23:50 Download gff for RE35182.complete
Subject Subject Range Query Range Percent Splice Strand
Osi24-RA 1..1602 529..2130 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:24:33 Download gff for RE35182.complete
Subject Subject Range Query Range Percent Splice Strand
CG15589-RA 1..2627 1..2627 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:48:08 Download gff for RE35182.complete
Subject Subject Range Query Range Percent Splice Strand
CG15589-RA 1..2627 1..2627 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:57:45 Download gff for RE35182.complete
Subject Subject Range Query Range Percent Splice Strand
Osi24-RA 3..2629 1..2627 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:40:35 Download gff for RE35182.complete
Subject Subject Range Query Range Percent Splice Strand
CG15589-RA 1..2627 1..2627 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:23:50 Download gff for RE35182.complete
Subject Subject Range Query Range Percent Splice Strand
Osi24-RA 3..2629 1..2627 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:47:27 Download gff for RE35182.complete
Subject Subject Range Query Range Percent Splice Strand
3R 6198813..6199263 1..451 100 -> Plus
3R 6204368..6205108 452..1192 100 -> Plus
3R 6205484..6205597 1193..1306 100 -> Plus
3R 6205658..6205819 1307..1468 100 -> Plus
3R 6205885..6206335 1469..1919 100 -> Plus
3R 6206971..6207678 1920..2627 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:47:27 Download gff for RE35182.complete
Subject Subject Range Query Range Percent Splice Strand
3R 6198813..6199263 1..451 100 -> Plus
3R 6204368..6205108 452..1192 100 -> Plus
3R 6205484..6205597 1193..1306 100 -> Plus
3R 6205658..6205819 1307..1468 100 -> Plus
3R 6205885..6206335 1469..1919 100 -> Plus
3R 6206971..6207678 1920..2627 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:47:27 Download gff for RE35182.complete
Subject Subject Range Query Range Percent Splice Strand
3R 6198813..6199263 1..451 100 -> Plus
3R 6204368..6205108 452..1192 100 -> Plus
3R 6205484..6205597 1193..1306 100 -> Plus
3R 6205658..6205819 1307..1468 100 -> Plus
3R 6205885..6206335 1469..1919 100 -> Plus
3R 6206971..6207678 1920..2627 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:57:45 Download gff for RE35182.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2031380..2031541 1307..1468 100 -> Plus
arm_3R 2024535..2024985 1..451 100 -> Plus
arm_3R 2030090..2030830 452..1192 100 -> Plus
arm_3R 2031206..2031319 1193..1306 100 -> Plus
arm_3R 2031607..2032057 1469..1919 100 -> Plus
arm_3R 2032693..2033400 1920..2627 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:12:55 Download gff for RE35182.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5939644..5940094 1..451 100 -> Plus
3R 5945199..5945939 452..1192 100 -> Plus
3R 5946315..5946428 1193..1306 100 -> Plus
3R 5946489..5946650 1307..1468 100 -> Plus
3R 5946716..5947166 1469..1919 100 -> Plus
3R 5947802..5948509 1920..2627 100   Plus

RE35182.pep Sequence

Translation from 528 to 2129

> RE35182.pep
MKMGSQYIDGAKLKANSHRKRRCSPLLYGIILLCKVAMIPAAVPESELDA
GALYSQPLTTMAGQPRNDDTFRPILPIDISPEFISRNVFTKSGQYRVFQP
AESESDLRLAVAMRRRNFKHPSDSPRKQESESSAAAFKNQTITSIDAELK
GLEDLLVDYVEQFFSNGRYEPTPGLVLALQQNHSHPQSYTGKRTTRSILE
DTNVELNVPRAFESARLLFFSGLKKVMWPIYMGLQVLKSVLFAMFLPTII
SSVSRLIGKGITSGSAGSVPLFIRPIEPPQELDFRDNSMNFDDDSKFSLA
DEGKTPAGYEYNAEASQQQAQYAQVNGNSVNQATLSRYGGQQMMQDTYLS
ALQSIGAASFKNSQSMSGSFSAGAGGGAPGMTKKPTPAVMNTFQSFQKVP
SSSLLLSNYDPFYSPLLSRLDSVFAQLKLNPENEACREKLICLMYANPAK
YAPYSNLVSAQLSRELNELRKPTSDNPDILRFFKYMRAAKDGQDGVDCDE
SFAKCKELKDLENPAMLSTYNDINKLVQARKLA*

RE35182.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 22:19:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16374-PA 540 GF16374-PA 1..540 1..533 2297 83.3 Plus
Dana\GF16390-PA 768 GF16390-PA 668..763 408..505 270 45.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 22:19:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13130-PA 532 GG13130-PA 1..532 1..533 2691 94.9 Plus
Dere\GG13280-PA 739 GG13280-PA 639..734 408..505 264 43.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 22:19:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14017-PA 497 GH14017-PA 1..497 61..533 1782 72 Plus
Dgri\GH14034-PA 947 GH14034-PA 847..942 408..505 274 45.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:50:52
Subject Length Description Subject Range Query Range Score Percent Strand
Osi24-PA 533 CG15589-PA 1..533 1..533 2724 100 Plus
Osi17-PB 648 CG15598-PB 548..643 408..505 259 44.9 Plus
Osi17-PA 648 CG15598-PA 548..643 408..505 259 44.9 Plus
Osi17-PD 750 CG15598-PD 650..745 408..505 259 44.9 Plus
Osi17-PC 750 CG15598-PC 650..745 408..505 259 44.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 22:19:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24390-PA 510 GI24390-PA 1..510 61..533 1805 70.6 Plus
Dmoj\GI24407-PA 702 GI24407-PA 602..697 408..505 259 43.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 22:19:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24053-PA 473 GL24053-PA 1..473 61..533 2028 82.1 Plus
Dper\GL24071-PA 741 GL24071-PA 641..736 408..505 270 45.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 22:19:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13830-PA 537 GA13830-PA 14..536 11..532 2160 78.9 Plus
Dpse\GA26496-PC 654 GA26496-PC 554..649 408..505 269 45.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 22:19:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10862-PA 533 GM10862-PA 1..533 1..533 2780 97.6 Plus
Dsec\GM10881-PA 647 GM10881-PA 547..642 408..505 268 44.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 22:19:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19844-PA 533 GD19844-PA 1..533 1..533 2792 97.9 Plus
Dsim\GD19860-PA 545 GD19860-PA 445..540 408..505 268 44.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 22:19:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14246-PA 472 GJ14246-PA 1..472 61..533 1889 76.4 Plus
Dvir\GJ14266-PA 705 GJ14266-PA 605..700 408..505 274 46.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 22:19:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13032-PA 492 GK13032-PA 14..492 54..533 1932 77 Plus
Dwil\GK13049-PA 724 GK13049-PA 624..719 408..505 271 46.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 22:19:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10185-PA 531 GE10185-PA 1..531 1..533 2512 94.6 Plus
Dyak\GE10205-PA 769 GE10205-PA 669..764 408..505 274 45.9 Plus

RE35182.hyp Sequence

Translation from 528 to 2129

> RE35182.hyp
MKMGSQYIDGAKLKANSHRKRRCSPLLYGIILLCKVAMIPAAVPESELDA
GALYSQPLTTMAGQPRNDDTFRPILPIDISPEFISRNVFTKSGQYRVFQP
AESESDLRLAVAMRRRNFKHPSDSPRKQESESSAAAFKNQTITSIDAELK
GLEDLLVDYVEQFFSNGRYEPTPGLVLALQQNHSHPQSYTGKRTTRSILE
DTNVELNVPRAFESARLLFFSGLKKVMWPIYMGLQVLKSVLFAMFLPTII
SSVSRLIGKGITSGSAGSVPLFIRPIEPPQELDFRDNSMNFDDDSKFSLA
DEGKTPAGYEYNAEASQQQAQYAQVNGNSVNQATLSRYGGQQMMQDTYLS
ALQSIGAASFKNSQSMSGSFSAGAGGGAPGMTKKPTPAVMNTFQSFQKVP
SSSLLLSNYDPFYSPLLSRLDSVFAQLKLNPENEACREKLICLMYANPAK
YAPYSNLVSAQLSRELNELRKPTSDNPDILRFFKYMRAAKDGQDGVDCDE
SFAKCKELKDLENPAMLSTYNDINKLVQARKLA*

RE35182.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:46:53
Subject Length Description Subject Range Query Range Score Percent Strand
Osi24-PA 533 CG15589-PA 1..533 1..533 2724 100 Plus
Osi17-PB 648 CG15598-PB 548..643 408..505 259 44.9 Plus
Osi17-PA 648 CG15598-PA 548..643 408..505 259 44.9 Plus
Osi17-PD 750 CG15598-PD 650..745 408..505 259 44.9 Plus
Osi17-PC 750 CG15598-PC 650..745 408..505 259 44.9 Plus