Clone RE35194 Report

Search the DGRC for RE35194

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:351
Well:94
Vector:pFlc-1
Associated Gene/TranscriptSyx6-RB
Protein status:RE35194.pep: gold
Preliminary Size:1709
Sequenced Size:1745

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7736 2002-01-01 Sim4 clustering to Release 2
CG7736 2002-05-20 Blastp of sequenced clone
Syx6 2008-04-29 Release 5.5 accounting
Syx6 2008-08-15 Release 5.9 accounting
Syx6 2008-12-18 5.12 accounting

Clone Sequence Records

RE35194.complete Sequence

1745 bp (1745 high quality bases) assembled on 2002-05-20

GenBank Submission: BT003505

> RE35194.complete
ATCGCACTTGGGTCATACTAAGCCTTACGGTTTATTTTGCTAGCAGCAAA
ACAGAAATAAAACCTTTACTTAAATTTATTTATCAGAATTTGTCTCGTGT
GAACTTGAAATTAAAGTCCGTCACCGTGTTCTCGGACCGAAGTTTGCTAA
ATGACGTGGAGACGAGCAGCAGCGAGGTATTCAAAGCTCTGAACAAAACC
CGCGGCCTCTATCTGCGTTGGCGGGAGCTGGGCGAGAACGGCGGAACGGA
GGCTGAATGGACCACCACCGAGCTGCGTAACTCGCTACGGAGCATCGAGT
GGGATCTCGAGGACCTCGAGGACACTATCAGCATCGTTGAGAAGAATCCA
AGCAAGTTTCGGATCGACAACCGCGAACTCTCCAGCCGGCGCCACTTCAT
CGACAACACTCGCGATGAGGTCAAGCAGATGAAGGATAAGATGAGCCTGA
ACCGGAGCCGGGACAGAGACATCACCGCACACCAGCCGCTGCTCGACAAC
GATCGCCACAGCCCCAATCACAATCATTCCATTGCCATACCCAATTCGAA
TTCCAACTCCAACGAGTACCATCAGCATCCACACAACGATCGCACGTACC
TCGTGGAGTGTCCCAACGGCAACTCGCTGATCAATAGCGGCAGTCAGGTG
GCCAATACCATAGCTGGGACCATGTCGGCGGCAGCGGCAGCAGCATCCCG
CCACAGCGGCACCAAGTACTCCAAGCTGGAGAACGCCCTGGACAGTCCCA
GTCACTATGGGCAGACGCATCACGGCGGCATGGACAGTCCGAGTCATAGG
TACGTGGGCGAAACAGTGTCCATACAGCAGCGTATGATCCAGGGACAGGA
TGAGCAGCTAGACATGATCAGCGATTCGATTGGTACCCTCAAGACGGTCT
CGCGGCAAATTGGCGTTGAGCTCGATGAGCAGGCCGTCATGCTAGACGAC
TTTGGGAACGAGTTCGATACCACGGAGTCCAAGTTGGATACGACCATGAA
GAAAGTTGCCAAAGTCTTGCACATGAATAATGATAAACGACAGTGGGCCG
CCATTCTCATCCTATCCGGACTGTTATTGTTTGTGATAATTTTGTTTATT
ATTTTGTAATTGCTTTCGTTGTTCCCAAATCGTTTATATTTAGTGTAAAT
TAGATTTATTTATGACTTAGCTTGCTTTTGAATTCGGGCTCTTAATTACA
ATTCCATGTAAACTCCCTTGCTGTATATACACGGAAACATTTTAACCTGA
TTTATTACCAGCCGCCTCTCTCTATATATATATAATGTAATTCCAAAGCT
ACGGACAAATGATCATGTAAAGTCAATGTAGGCGGGTAATAAAAGATAAC
TAACTACTTACATATAAACCAAGTGCTCCAGAGTTCTGTCATTCCCAATT
TGGCCAAAGGATACTGCAACTGTAAGCTGTATATACATCGAAGGATATAT
CTGCATATATATACATACAAACAAAATGGACCTACCAATATCAAACGAGT
TATTTAACGAAGAGTCTTAGGAAATTTCACTAACCAAATCTAGCAAAAAC
TTGTATGCAATTGAGTAAATATATATACTTATAAATTAAATTCCTAATTT
AAAGCCAAATGAGGTACTTCTTACGGGTCACCTAGAAATACTGTATGAGT
GCACAGAGAGAAATTGTATACATATACAAAAATTTGTTCGCTATTTTGAA
AGCCTAAATTAAACAAAAATTGGAAATACAAAAAAAAAAAAAAAA

RE35194.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:59:08
Subject Length Description Subject Range Query Range Score Percent Strand
Syx6-RB 1747 Syx6-RB 17..1747 1..1731 8655 100 Plus
Syx6-RE 2121 Syx6-RE 560..2121 170..1731 7810 100 Plus
Syx6-RD 2016 Syx6-RD 458..2016 173..1731 7795 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:43:29
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 7109245..7109942 1032..1729 3475 99.9 Plus
chr2R 21145070 chr2R 7108390..7109091 331..1032 3465 99.6 Plus
chr2R 21145070 chr2R 7107919..7108079 170..330 805 100 Plus
chr2R 21145070 chr2R 7106999..7107170 1..172 785 97.1 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:51:38 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:43:27
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11220928..11221629 331..1032 3510 100 Plus
2R 25286936 2R 11221783..11222482 1032..1731 3500 100 Plus
2R 25286936 2R 11219541..11219712 1..172 860 100 Plus
2R 25286936 2R 11220461..11220621 170..330 805 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:31:13
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 11222127..11222828 331..1032 3510 100 Plus
2R 25260384 2R 11222982..11223681 1032..1731 3500 100 Plus
2R 25260384 2R 11220740..11220911 1..172 860 100 Plus
2R 25260384 2R 11221660..11221820 170..330 805 100 Plus
Blast to na_te.dros performed 2019-03-15 22:43:28
Subject Length Description Subject Range Query Range Score Percent Strand
Stalker2 7672 Stalker2 STALKER2 7672bp 1420..1583 1564..1728 149 59.1 Plus
Idefix 7411 Idefix DME9736 7411bp Derived from AJ009736 (e1371475) (Rel. 58, Last updated, Version 1). 1597..1681 1154..1069 148 69.7 Minus
rooA 7621 rooA ROOA_LTR 7621bp 3938..3975 32..68 115 81.6 Plus
Circe 7450 Circe CIRC 7450bp 6560..6645 1547..1628 114 62.8 Plus

RE35194.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:44:43 Download gff for RE35194.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 7106999..7107170 1..172 97 -> Plus
chr2R 7107922..7108079 173..330 100 -> Plus
chr2R 7108390..7109091 331..1032 99 -> Plus
chr2R 7109246..7109942 1033..1729 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:11:43 Download gff for RE35194.complete
Subject Subject Range Query Range Percent Splice Strand
Syx6-RE 78..1020 167..1109 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:38:44 Download gff for RE35194.complete
Subject Subject Range Query Range Percent Splice Strand
Syx6-RE 78..1020 167..1109 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:30:44 Download gff for RE35194.complete
Subject Subject Range Query Range Percent Splice Strand
Syx6-RE 78..1020 167..1109 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:30:27 Download gff for RE35194.complete
Subject Subject Range Query Range Percent Splice Strand
Syx6-RE 78..1020 167..1109 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:33:16 Download gff for RE35194.complete
Subject Subject Range Query Range Percent Splice Strand
Syx6-RE 78..1020 167..1109 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:11:43 Download gff for RE35194.complete
Subject Subject Range Query Range Percent Splice Strand
Syx6-RB 1..1729 1..1729 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:38:44 Download gff for RE35194.complete
Subject Subject Range Query Range Percent Splice Strand
Syx6-RB 1..1729 1..1729 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:30:44 Download gff for RE35194.complete
Subject Subject Range Query Range Percent Splice Strand
Syx6-RD 422..1982 168..1729 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:30:27 Download gff for RE35194.complete
Subject Subject Range Query Range Percent Splice Strand
Syx6-RB 1..1729 1..1729 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:33:16 Download gff for RE35194.complete
Subject Subject Range Query Range Percent Splice Strand
Syx6-RD 422..1982 168..1729 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:44:43 Download gff for RE35194.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11220464..11220621 173..330 100 -> Plus
2R 11219541..11219712 1..172 100 -> Plus
2R 11220928..11221629 331..1032 100 -> Plus
2R 11221784..11222480 1033..1729 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:44:43 Download gff for RE35194.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11220464..11220621 173..330 100 -> Plus
2R 11219541..11219712 1..172 100 -> Plus
2R 11220928..11221629 331..1032 100 -> Plus
2R 11221784..11222480 1033..1729 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:44:43 Download gff for RE35194.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11220464..11220621 173..330 100 -> Plus
2R 11219541..11219712 1..172 100 -> Plus
2R 11220928..11221629 331..1032 100 -> Plus
2R 11221784..11222480 1033..1729 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:30:44 Download gff for RE35194.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7107969..7108126 173..330 100 -> Plus
arm_2R 7107046..7107217 1..172 100 -> Plus
arm_2R 7108433..7109134 331..1032 100 -> Plus
arm_2R 7109289..7109985 1033..1729 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:03:03 Download gff for RE35194.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11222127..11222828 331..1032 100 -> Plus
2R 11222983..11223679 1033..1729 100   Plus
2R 11220740..11220911 1..172 100 -> Plus
2R 11221663..11221820 173..330 100 -> Plus

RE35194.hyp Sequence

Translation from 2 to 1108

> RE35194.hyp
RTWVILSLTVYFASSKTEIKPLLKFIYQNLSRVNLKLKSVTVFSDRSLLN
DVETSSSEVFKALNKTRGLYLRWRELGENGGTEAEWTTTELRNSLRSIEW
DLEDLEDTISIVEKNPSKFRIDNRELSSRRHFIDNTRDEVKQMKDKMSLN
RSRDRDITAHQPLLDNDRHSPNHNHSIAIPNSNSNSNEYHQHPHNDRTYL
VECPNGNSLINSGSQVANTIAGTMSAAAAAASRHSGTKYSKLENALDSPS
HYGQTHHGGMDSPSHRYVGETVSIQQRMIQGQDEQLDMISDSIGTLKTVS
RQIGVELDEQAVMLDDFGNEFDTTESKLDTTMKKVAKVLHMNNDKRQWAA
ILILSGLLLFVIILFIIL*

RE35194.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:06:31
Subject Length Description Subject Range Query Range Score Percent Strand
Syx6-PE 339 CG7736-PE 12..339 37..368 1620 95.8 Plus
Syx6-PD 323 CG7736-PD 13..323 58..368 1613 100 Plus
Syx6-PB 226 CG7736-PB 1..226 143..368 1169 100 Plus

RE35194.pep Sequence

Translation from 428 to 1108

> RE35194.pep
MKDKMSLNRSRDRDITAHQPLLDNDRHSPNHNHSIAIPNSNSNSNEYHQH
PHNDRTYLVECPNGNSLINSGSQVANTIAGTMSAAAAAASRHSGTKYSKL
ENALDSPSHYGQTHHGGMDSPSHRYVGETVSIQQRMIQGQDEQLDMISDS
IGTLKTVSRQIGVELDEQAVMLDDFGNEFDTTESKLDTTMKKVAKVLHMN
NDKRQWAAILILSGLLLFVIILFIIL*

RE35194.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 03:55:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12527-PA 327 GF12527-PA 98..327 1..226 1151 95.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 03:55:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20169-PA 323 GG20169-PA 98..323 1..226 1210 100 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 03:55:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21291-PA 317 GH21291-PA 98..317 1..226 838 79.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:09:32
Subject Length Description Subject Range Query Range Score Percent Strand
Syx6-PB 226 CG7736-PB 1..226 1..226 1169 100 Plus
Syx6-PD 323 CG7736-PD 98..323 1..226 1169 100 Plus
Syx6-PE 339 CG7736-PE 114..339 1..226 1169 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 03:55:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19781-PA 308 GI19781-PA 98..308 1..226 868 80.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 03:55:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19968-PA 330 GL19968-PA 98..330 1..226 996 88.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 03:55:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA24086-PA 330 GA24086-PA 98..330 1..226 1005 88.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 03:55:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21258-PA 379 GM21258-PA 98..303 1..208 1078 97.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 03:55:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10772-PA 323 GD10772-PA 98..323 1..226 1202 99.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 03:55:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17697-PA 311 GJ17697-PA 98..311 1..226 859 79.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 03:55:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20954-PA 338 GK20954-PA 99..338 1..226 916 81.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 03:55:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12858-PA 323 GE12858-PA 98..323 1..226 1204 99.6 Plus