BDGP Sequence Production Resources |
Search the DGRC for RE35194
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 351 |
Well: | 94 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Syx6-RB |
Protein status: | RE35194.pep: gold |
Preliminary Size: | 1709 |
Sequenced Size: | 1745 |
Gene | Date | Evidence |
---|---|---|
CG7736 | 2002-01-01 | Sim4 clustering to Release 2 |
CG7736 | 2002-05-20 | Blastp of sequenced clone |
Syx6 | 2008-04-29 | Release 5.5 accounting |
Syx6 | 2008-08-15 | Release 5.9 accounting |
Syx6 | 2008-12-18 | 5.12 accounting |
1745 bp (1745 high quality bases) assembled on 2002-05-20
GenBank Submission: BT003505
> RE35194.complete ATCGCACTTGGGTCATACTAAGCCTTACGGTTTATTTTGCTAGCAGCAAA ACAGAAATAAAACCTTTACTTAAATTTATTTATCAGAATTTGTCTCGTGT GAACTTGAAATTAAAGTCCGTCACCGTGTTCTCGGACCGAAGTTTGCTAA ATGACGTGGAGACGAGCAGCAGCGAGGTATTCAAAGCTCTGAACAAAACC CGCGGCCTCTATCTGCGTTGGCGGGAGCTGGGCGAGAACGGCGGAACGGA GGCTGAATGGACCACCACCGAGCTGCGTAACTCGCTACGGAGCATCGAGT GGGATCTCGAGGACCTCGAGGACACTATCAGCATCGTTGAGAAGAATCCA AGCAAGTTTCGGATCGACAACCGCGAACTCTCCAGCCGGCGCCACTTCAT CGACAACACTCGCGATGAGGTCAAGCAGATGAAGGATAAGATGAGCCTGA ACCGGAGCCGGGACAGAGACATCACCGCACACCAGCCGCTGCTCGACAAC GATCGCCACAGCCCCAATCACAATCATTCCATTGCCATACCCAATTCGAA TTCCAACTCCAACGAGTACCATCAGCATCCACACAACGATCGCACGTACC TCGTGGAGTGTCCCAACGGCAACTCGCTGATCAATAGCGGCAGTCAGGTG GCCAATACCATAGCTGGGACCATGTCGGCGGCAGCGGCAGCAGCATCCCG CCACAGCGGCACCAAGTACTCCAAGCTGGAGAACGCCCTGGACAGTCCCA GTCACTATGGGCAGACGCATCACGGCGGCATGGACAGTCCGAGTCATAGG TACGTGGGCGAAACAGTGTCCATACAGCAGCGTATGATCCAGGGACAGGA TGAGCAGCTAGACATGATCAGCGATTCGATTGGTACCCTCAAGACGGTCT CGCGGCAAATTGGCGTTGAGCTCGATGAGCAGGCCGTCATGCTAGACGAC TTTGGGAACGAGTTCGATACCACGGAGTCCAAGTTGGATACGACCATGAA GAAAGTTGCCAAAGTCTTGCACATGAATAATGATAAACGACAGTGGGCCG CCATTCTCATCCTATCCGGACTGTTATTGTTTGTGATAATTTTGTTTATT ATTTTGTAATTGCTTTCGTTGTTCCCAAATCGTTTATATTTAGTGTAAAT TAGATTTATTTATGACTTAGCTTGCTTTTGAATTCGGGCTCTTAATTACA ATTCCATGTAAACTCCCTTGCTGTATATACACGGAAACATTTTAACCTGA TTTATTACCAGCCGCCTCTCTCTATATATATATAATGTAATTCCAAAGCT ACGGACAAATGATCATGTAAAGTCAATGTAGGCGGGTAATAAAAGATAAC TAACTACTTACATATAAACCAAGTGCTCCAGAGTTCTGTCATTCCCAATT TGGCCAAAGGATACTGCAACTGTAAGCTGTATATACATCGAAGGATATAT CTGCATATATATACATACAAACAAAATGGACCTACCAATATCAAACGAGT TATTTAACGAAGAGTCTTAGGAAATTTCACTAACCAAATCTAGCAAAAAC TTGTATGCAATTGAGTAAATATATATACTTATAAATTAAATTCCTAATTT AAAGCCAAATGAGGTACTTCTTACGGGTCACCTAGAAATACTGTATGAGT GCACAGAGAGAAATTGTATACATATACAAAAATTTGTTCGCTATTTTGAA AGCCTAAATTAAACAAAAATTGGAAATACAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 7109245..7109942 | 1032..1729 | 3475 | 99.9 | Plus |
chr2R | 21145070 | chr2R | 7108390..7109091 | 331..1032 | 3465 | 99.6 | Plus |
chr2R | 21145070 | chr2R | 7107919..7108079 | 170..330 | 805 | 100 | Plus |
chr2R | 21145070 | chr2R | 7106999..7107170 | 1..172 | 785 | 97.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 11220928..11221629 | 331..1032 | 3510 | 100 | Plus |
2R | 25286936 | 2R | 11221783..11222482 | 1032..1731 | 3500 | 100 | Plus |
2R | 25286936 | 2R | 11219541..11219712 | 1..172 | 860 | 100 | Plus |
2R | 25286936 | 2R | 11220461..11220621 | 170..330 | 805 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 11222127..11222828 | 331..1032 | 3510 | 100 | Plus |
2R | 25260384 | 2R | 11222982..11223681 | 1032..1731 | 3500 | 100 | Plus |
2R | 25260384 | 2R | 11220740..11220911 | 1..172 | 860 | 100 | Plus |
2R | 25260384 | 2R | 11221660..11221820 | 170..330 | 805 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Stalker2 | 7672 | Stalker2 STALKER2 7672bp | 1420..1583 | 1564..1728 | 149 | 59.1 | Plus |
Idefix | 7411 | Idefix DME9736 7411bp Derived from AJ009736 (e1371475) (Rel. 58, Last updated, Version 1). | 1597..1681 | 1154..1069 | 148 | 69.7 | Minus |
rooA | 7621 | rooA ROOA_LTR 7621bp | 3938..3975 | 32..68 | 115 | 81.6 | Plus |
Circe | 7450 | Circe CIRC 7450bp | 6560..6645 | 1547..1628 | 114 | 62.8 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 7106999..7107170 | 1..172 | 97 | -> | Plus |
chr2R | 7107922..7108079 | 173..330 | 100 | -> | Plus |
chr2R | 7108390..7109091 | 331..1032 | 99 | -> | Plus |
chr2R | 7109246..7109942 | 1033..1729 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Syx6-RE | 78..1020 | 167..1109 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Syx6-RE | 78..1020 | 167..1109 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Syx6-RE | 78..1020 | 167..1109 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Syx6-RE | 78..1020 | 167..1109 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Syx6-RE | 78..1020 | 167..1109 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Syx6-RB | 1..1729 | 1..1729 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Syx6-RB | 1..1729 | 1..1729 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Syx6-RD | 422..1982 | 168..1729 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Syx6-RB | 1..1729 | 1..1729 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Syx6-RD | 422..1982 | 168..1729 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 11220464..11220621 | 173..330 | 100 | -> | Plus |
2R | 11219541..11219712 | 1..172 | 100 | -> | Plus |
2R | 11220928..11221629 | 331..1032 | 100 | -> | Plus |
2R | 11221784..11222480 | 1033..1729 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 11220464..11220621 | 173..330 | 100 | -> | Plus |
2R | 11219541..11219712 | 1..172 | 100 | -> | Plus |
2R | 11220928..11221629 | 331..1032 | 100 | -> | Plus |
2R | 11221784..11222480 | 1033..1729 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 11220464..11220621 | 173..330 | 100 | -> | Plus |
2R | 11219541..11219712 | 1..172 | 100 | -> | Plus |
2R | 11220928..11221629 | 331..1032 | 100 | -> | Plus |
2R | 11221784..11222480 | 1033..1729 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 7107969..7108126 | 173..330 | 100 | -> | Plus |
arm_2R | 7107046..7107217 | 1..172 | 100 | -> | Plus |
arm_2R | 7108433..7109134 | 331..1032 | 100 | -> | Plus |
arm_2R | 7109289..7109985 | 1033..1729 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 11222127..11222828 | 331..1032 | 100 | -> | Plus |
2R | 11222983..11223679 | 1033..1729 | 100 | Plus | |
2R | 11220740..11220911 | 1..172 | 100 | -> | Plus |
2R | 11221663..11221820 | 173..330 | 100 | -> | Plus |
Translation from 2 to 1108
> RE35194.hyp RTWVILSLTVYFASSKTEIKPLLKFIYQNLSRVNLKLKSVTVFSDRSLLN DVETSSSEVFKALNKTRGLYLRWRELGENGGTEAEWTTTELRNSLRSIEW DLEDLEDTISIVEKNPSKFRIDNRELSSRRHFIDNTRDEVKQMKDKMSLN RSRDRDITAHQPLLDNDRHSPNHNHSIAIPNSNSNSNEYHQHPHNDRTYL VECPNGNSLINSGSQVANTIAGTMSAAAAAASRHSGTKYSKLENALDSPS HYGQTHHGGMDSPSHRYVGETVSIQQRMIQGQDEQLDMISDSIGTLKTVS RQIGVELDEQAVMLDDFGNEFDTTESKLDTTMKKVAKVLHMNNDKRQWAA ILILSGLLLFVIILFIIL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Syx6-PE | 339 | CG7736-PE | 12..339 | 37..368 | 1620 | 95.8 | Plus |
Syx6-PD | 323 | CG7736-PD | 13..323 | 58..368 | 1613 | 100 | Plus |
Syx6-PB | 226 | CG7736-PB | 1..226 | 143..368 | 1169 | 100 | Plus |
Translation from 428 to 1108
> RE35194.pep MKDKMSLNRSRDRDITAHQPLLDNDRHSPNHNHSIAIPNSNSNSNEYHQH PHNDRTYLVECPNGNSLINSGSQVANTIAGTMSAAAAAASRHSGTKYSKL ENALDSPSHYGQTHHGGMDSPSHRYVGETVSIQQRMIQGQDEQLDMISDS IGTLKTVSRQIGVELDEQAVMLDDFGNEFDTTESKLDTTMKKVAKVLHMN NDKRQWAAILILSGLLLFVIILFIIL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF12527-PA | 327 | GF12527-PA | 98..327 | 1..226 | 1151 | 95.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG20169-PA | 323 | GG20169-PA | 98..323 | 1..226 | 1210 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH21291-PA | 317 | GH21291-PA | 98..317 | 1..226 | 838 | 79.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Syx6-PB | 226 | CG7736-PB | 1..226 | 1..226 | 1169 | 100 | Plus |
Syx6-PD | 323 | CG7736-PD | 98..323 | 1..226 | 1169 | 100 | Plus |
Syx6-PE | 339 | CG7736-PE | 114..339 | 1..226 | 1169 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI19781-PA | 308 | GI19781-PA | 98..308 | 1..226 | 868 | 80.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL19968-PA | 330 | GL19968-PA | 98..330 | 1..226 | 996 | 88.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA24086-PA | 330 | GA24086-PA | 98..330 | 1..226 | 1005 | 88.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM21258-PA | 379 | GM21258-PA | 98..303 | 1..208 | 1078 | 97.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD10772-PA | 323 | GD10772-PA | 98..323 | 1..226 | 1202 | 99.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ17697-PA | 311 | GJ17697-PA | 98..311 | 1..226 | 859 | 79.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK20954-PA | 338 | GK20954-PA | 99..338 | 1..226 | 916 | 81.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE12858-PA | 323 | GE12858-PA | 98..323 | 1..226 | 1204 | 99.6 | Plus |