BDGP Sequence Production Resources |
Search the DGRC for RE35195
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 351 |
Well: | 95 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG5694-RA |
Protein status: | RE35195.pep: gold |
Preliminary Size: | 1437 |
Sequenced Size: | 2134 |
Gene | Date | Evidence |
---|---|---|
CG5694 | 2002-10-09 | Blastp of sequenced clone |
CG5694 | 2008-04-29 | Release 5.5 accounting |
CG5694 | 2008-08-15 | Release 5.9 accounting |
CG5694 | 2008-12-18 | 5.12 accounting |
2134 bp (2134 high quality bases) assembled on 2002-10-09
GenBank Submission: BT001618
> RE35195.complete AGTTCTCACTTCGACTATTCGATAGCAACTACAACAAATGGTTTTTTTAC GAAGAAAGTGTTGTGTACTGTAACTATGTTATCATATTTGTGATTGTAGA TCTCGGTGTCTACCGTTTTGTTAATCATTGCGAATTCTTGTGACAATGGA TGAAAAAGATAAAGCTCAACACAACATGATATCCAACCTACCACTTTTGT TTGCGAACGGATATCCAACATCCCTAGAAAAAATTACGGAGTCCCAGTTA GAAAATTTTATTCCCTTCATGGTGCAATGCTCTTTAGGACACATAAACTT ACCAAAGAAAATAGATTGCAGTGAACCAGAATGGTGGCCCGAAAGCGCTC CTTTCGAGATTCCGCTCAAAAAGCCGAAAGCATTTGTTGGGAATTGGATG GAAAAAATGAAAGAAATTGTGGTTATATGCTATCAATTTCACAAAAGCTT ATTTCTATTAAGATTTTGTAATGATTTAGCTGCGTATGAACACGCGAGCT TAAGATTCATAAACAATTATAACTCAACAACTTCATTGTATGACAGGAGA AACAACAAACTGTTGGTTACATTTCGAAATGAAAACATGTCATATGATAG ACAACAAAAGAACAGAAAGTGCTTGTTGCTGCAAAAGAACAACAGTTCCA TTAGCGAAAACGTACAGCATATGATGGTTGAGCCACCACCTTTTGATATC TACCTATGTGACAACTGTGATGCCGAACTTTATTCTAAAGAAGCTATACT CGAACACGAAAACATTTGTTGCATGGAGGATGACGTTATACTTTGTGATT CCCCTGAGCCAGATAACAAAAGTGATGGGAAAAACGAAGATATCGAACAG CGCAACGCCTTTCTCTTAAACTTTAAACTGCAACCCAAATTCTCCGATAA TAGTTTATCTAAAGAGAAACAGAAAACATATTCATTCAGCGAAGAAACAT CAACGGAAACATCAAACAGAAAGAGGCGTTTACCATCGCGGAGAAATCGA ACAGTTCATTCGTTTAGTAGGTGTTCGTTTATCCCAATATCATCACCTGC AGGACAGCAATTGTTAAAATCGACAAAACAAACAATATCAATGGATTATA TTGCGGAAAGACAGGAACGCCTGGAACGCTTTTGTTACACTCCATTGATC AATAAATCAAATACCAAGCAAAAGTATTTTGAAAAAAAAACAAACACTAC AGTGCATTGTACATTTAAAAAGTCACATGAACACAATTATCACATATATT CCTTTCCGCGGCGTCAATTTGTTAAACGCAGGGACACTACTGAGAACTTT TTGTTTTTGAACTCTCCGCTGATTAAACAATGCCGTCCAATATCAGTCAG ATTGAAAAAAATATCCGAACACGTAATGGAAGAGCAAAATCACACTGCAA ATACAAAACTCAATATAAGACTAACGCGCCACAATTCGCTCAACTCACAC TGGAGAATTTCACCCACAAAGGAAGTTGTTGTTGATACAATTGACTTATG CTCCTCGGACGACGATGAGCAACAAGAGCCAGCAATAGGCTCGCCCAAAA GACTTGGCTCGGATGCACTGACTGTAATAAAACTTACACATAACAACAGA AATTTGTACAGTAGCCGCGTCGTCGAGCCAAGTAAATGTGCTCCAGAGCC AGAATCAGTAATAGTTGATAATTCGGTTAAGCCCCTACAGCAATCTTTAT ATATTTATTCAAACTATAAGGCTAATTCAGTAATTAGTCGCTGTACCGTA GACTCGATAGCCAATCATTCACTGGTTGGTTCCCTGAGTACATCGAATAC TTTTGCTGATTCTGAGGGACACAGAAAGGAATACAATCAGGAAAACTGCA ATTTTTCTAAGAACTTGGTCGCACTCACAGACTGGTACGCTCATTCGGCT AATTCGAAAAAAAGCACTACAAATCAGACTACTGAGAGTAGTACGTTTGA TGCGATTTCCGCGGCTCCGCCTTTCAATGGCACTGGGCGTATAATTTCCA TTGATTTAACTTCTTAGACATTTTAATCCATAGTTAAGTTAAGAAATTGT TATTTTACAAGAAAACCTAAACTAAGAATTACCATATATGAATAAATAAT TTGTTTAAATACTTTTACAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG5694-RA | 2232 | CG5694-RA | 69..2185 | 1..2117 | 10585 | 100 | Plus |
CG5694-RB | 2465 | CG5694-RB | 441..2418 | 140..2117 | 9890 | 100 | Plus |
CG5694.c | 2265 | CG5694.c | 288..2264 | 141..2117 | 9885 | 100 | Plus |
CG5694-RB | 2465 | CG5694-RB | 46..185 | 1..140 | 700 | 100 | Plus |
CG5694.c | 2265 | CG5694.c | 4..143 | 1..140 | 700 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2L | 23010047 | chr2L | 10226612..10227977 | 2117..752 | 6830 | 100 | Minus |
chr2L | 23010047 | chr2L | 10228556..10228807 | 391..140 | 1260 | 100 | Minus |
chr2L | 23010047 | chr2L | 10228265..10228463 | 589..391 | 995 | 100 | Minus |
chr2L | 23010047 | chr2L | 10228035..10228198 | 752..589 | 820 | 100 | Minus |
chr2L | 23010047 | chr2L | 10230390..10230529 | 140..1 | 700 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 10227761..10229126 | 2117..752 | 6830 | 100 | Minus |
2L | 23513712 | 2L | 10229705..10229956 | 391..140 | 1260 | 100 | Minus |
2L | 23513712 | 2L | 10229414..10229612 | 589..391 | 995 | 100 | Minus |
2L | 23513712 | 2L | 10229184..10229347 | 752..589 | 820 | 100 | Minus |
2L | 23513712 | 2L | 10231539..10231678 | 140..1 | 700 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 10227761..10229126 | 2117..752 | 6830 | 100 | Minus |
2L | 23513712 | 2L | 10229705..10229956 | 391..140 | 1260 | 100 | Minus |
2L | 23513712 | 2L | 10229414..10229612 | 589..391 | 995 | 100 | Minus |
2L | 23513712 | 2L | 10229184..10229347 | 752..589 | 820 | 100 | Minus |
2L | 23513712 | 2L | 10231539..10231678 | 140..1 | 700 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
rooA | 7621 | rooA ROOA_LTR 7621bp | 2285..2359 | 888..962 | 122 | 65.8 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 10230390..10230529 | 1..140 | 100 | Minus | |
chr2L | 10226640..10227977 | 752..2089 | 100 | <- | Minus |
chr2L | 10228036..10228197 | 590..751 | 100 | <- | Minus |
chr2L | 10228265..10228462 | 392..589 | 100 | <- | Minus |
chr2L | 10228556..10228806 | 141..391 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5694-RB | 1..1872 | 146..2017 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5694-RB | 1..1872 | 146..2017 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5694-RA | 1..1872 | 146..2017 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5694-RB | 1..1872 | 146..2017 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5694-RA | 1..1872 | 146..2017 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5694-RA | 12..2128 | 1..2118 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5694-RA | 12..2128 | 1..2118 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5694-RA | 15..2131 | 1..2118 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5694-RA | 12..2128 | 1..2118 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5694-RA | 15..2131 | 1..2118 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 10227760..10229126 | 752..2118 | 99 | <- | Minus |
2L | 10229185..10229346 | 590..751 | 100 | <- | Minus |
2L | 10229414..10229611 | 392..589 | 100 | <- | Minus |
2L | 10229705..10229955 | 141..391 | 100 | <- | Minus |
2L | 10231539..10231678 | 1..140 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 10227760..10229126 | 752..2118 | 99 | <- | Minus |
2L | 10229185..10229346 | 590..751 | 100 | <- | Minus |
2L | 10229414..10229611 | 392..589 | 100 | <- | Minus |
2L | 10229705..10229955 | 141..391 | 100 | <- | Minus |
2L | 10231539..10231678 | 1..140 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 10227760..10229126 | 752..2118 | 99 | <- | Minus |
2L | 10229185..10229346 | 590..751 | 100 | <- | Minus |
2L | 10229414..10229611 | 392..589 | 100 | <- | Minus |
2L | 10229705..10229955 | 141..391 | 100 | <- | Minus |
2L | 10231539..10231678 | 1..140 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 10231539..10231678 | 1..140 | 100 | Minus | |
arm_2L | 10229414..10229611 | 392..589 | 100 | <- | Minus |
arm_2L | 10227760..10229126 | 752..2118 | 99 | <- | Minus |
arm_2L | 10229185..10229346 | 590..751 | 100 | <- | Minus |
arm_2L | 10229705..10229955 | 141..391 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 10227760..10229126 | 752..2118 | 99 | <- | Minus |
2L | 10229185..10229346 | 590..751 | 100 | <- | Minus |
2L | 10229705..10229955 | 141..391 | 100 | <- | Minus |
2L | 10231539..10231678 | 1..140 | 100 | Minus | |
2L | 10229414..10229611 | 392..589 | 100 | <- | Minus |
Translation from 145 to 2016
> RE35195.pep MDEKDKAQHNMISNLPLLFANGYPTSLEKITESQLENFIPFMVQCSLGHI NLPKKIDCSEPEWWPESAPFEIPLKKPKAFVGNWMEKMKEIVVICYQFHK SLFLLRFCNDLAAYEHASLRFINNYNSTTSLYDRRNNKLLVTFRNENMSY DRQQKNRKCLLLQKNNSSISENVQHMMVEPPPFDIYLCDNCDAELYSKEA ILEHENICCMEDDVILCDSPEPDNKSDGKNEDIEQRNAFLLNFKLQPKFS DNSLSKEKQKTYSFSEETSTETSNRKRRLPSRRNRTVHSFSRCSFIPISS PAGQQLLKSTKQTISMDYIAERQERLERFCYTPLINKSNTKQKYFEKKTN TTVHCTFKKSHEHNYHIYSFPRRQFVKRRDTTENFLFLNSPLIKQCRPIS VRLKKISEHVMEEQNHTANTKLNIRLTRHNSLNSHWRISPTKEVVVDTID LCSSDDDEQQEPAIGSPKRLGSDALTVIKLTHNNRNLYSSRVVEPSKCAP EPESVIVDNSVKPLQQSLYIYSNYKANSVISRCTVDSIANHSLVGSLSTS NTFADSEGHRKEYNQENCNFSKNLVALTDWYAHSANSKKSTTNQTTESST FDAISAAPPFNGTGRIISIDLTS*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF19656-PA | 621 | GF19656-PA | 1..621 | 1..623 | 2741 | 84.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG23968-PA | 621 | GG23968-PA | 1..621 | 1..623 | 3110 | 93.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH13366-PA | 634 | GH13366-PA | 1..634 | 1..623 | 1949 | 63.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG5694-PB | 623 | CG5694-PB | 1..623 | 1..623 | 3290 | 100 | Plus |
CG5694-PA | 623 | CG5694-PA | 1..623 | 1..623 | 3290 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI17620-PA | 613 | GI17620-PA | 1..613 | 1..623 | 2013 | 65.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL14798-PA | 413 | GL14798-PA | 1..413 | 210..623 | 1488 | 69.3 | Plus |
Dper\GL14797-PA | 93 | GL14797-PA | 1..82 | 1..82 | 414 | 90.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA19063-PA | 420 | GA19063-PA | 1..420 | 203..623 | 1531 | 69.8 | Plus |
Dpse\GA23189-PA | 207 | GA23189-PA | 1..203 | 1..202 | 1015 | 91.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM11935-PA | 623 | GM11935-PA | 1..623 | 1..623 | 3251 | 97 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD22292-PA | 623 | GD22292-PA | 1..623 | 1..623 | 3248 | 97 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ17532-PA | 466 | GJ17532-PA | 1..466 | 149..623 | 1329 | 59.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK15269-PA | 673 | GK15269-PA | 1..673 | 1..623 | 2227 | 67.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE26307-PA | 621 | GE26307-PA | 1..621 | 1..623 | 3153 | 94.7 | Plus |
Translation from 145 to 2016
> RE35195.hyp MDEKDKAQHNMISNLPLLFANGYPTSLEKITESQLENFIPFMVQCSLGHI NLPKKIDCSEPEWWPESAPFEIPLKKPKAFVGNWMEKMKEIVVICYQFHK SLFLLRFCNDLAAYEHASLRFINNYNSTTSLYDRRNNKLLVTFRNENMSY DRQQKNRKCLLLQKNNSSISENVQHMMVEPPPFDIYLCDNCDAELYSKEA ILEHENICCMEDDVILCDSPEPDNKSDGKNEDIEQRNAFLLNFKLQPKFS DNSLSKEKQKTYSFSEETSTETSNRKRRLPSRRNRTVHSFSRCSFIPISS PAGQQLLKSTKQTISMDYIAERQERLERFCYTPLINKSNTKQKYFEKKTN TTVHCTFKKSHEHNYHIYSFPRRQFVKRRDTTENFLFLNSPLIKQCRPIS VRLKKISEHVMEEQNHTANTKLNIRLTRHNSLNSHWRISPTKEVVVDTID LCSSDDDEQQEPAIGSPKRLGSDALTVIKLTHNNRNLYSSRVVEPSKCAP EPESVIVDNSVKPLQQSLYIYSNYKANSVISRCTVDSIANHSLVGSLSTS NTFADSEGHRKEYNQENCNFSKNLVALTDWYAHSANSKKSTTNQTTESST FDAISAAPPFNGTGRIISIDLTS*