Clone RE35195 Report

Search the DGRC for RE35195

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:351
Well:95
Vector:pFlc-1
Associated Gene/TranscriptCG5694-RA
Protein status:RE35195.pep: gold
Preliminary Size:1437
Sequenced Size:2134

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5694 2002-10-09 Blastp of sequenced clone
CG5694 2008-04-29 Release 5.5 accounting
CG5694 2008-08-15 Release 5.9 accounting
CG5694 2008-12-18 5.12 accounting

Clone Sequence Records

RE35195.complete Sequence

2134 bp (2134 high quality bases) assembled on 2002-10-09

GenBank Submission: BT001618

> RE35195.complete
AGTTCTCACTTCGACTATTCGATAGCAACTACAACAAATGGTTTTTTTAC
GAAGAAAGTGTTGTGTACTGTAACTATGTTATCATATTTGTGATTGTAGA
TCTCGGTGTCTACCGTTTTGTTAATCATTGCGAATTCTTGTGACAATGGA
TGAAAAAGATAAAGCTCAACACAACATGATATCCAACCTACCACTTTTGT
TTGCGAACGGATATCCAACATCCCTAGAAAAAATTACGGAGTCCCAGTTA
GAAAATTTTATTCCCTTCATGGTGCAATGCTCTTTAGGACACATAAACTT
ACCAAAGAAAATAGATTGCAGTGAACCAGAATGGTGGCCCGAAAGCGCTC
CTTTCGAGATTCCGCTCAAAAAGCCGAAAGCATTTGTTGGGAATTGGATG
GAAAAAATGAAAGAAATTGTGGTTATATGCTATCAATTTCACAAAAGCTT
ATTTCTATTAAGATTTTGTAATGATTTAGCTGCGTATGAACACGCGAGCT
TAAGATTCATAAACAATTATAACTCAACAACTTCATTGTATGACAGGAGA
AACAACAAACTGTTGGTTACATTTCGAAATGAAAACATGTCATATGATAG
ACAACAAAAGAACAGAAAGTGCTTGTTGCTGCAAAAGAACAACAGTTCCA
TTAGCGAAAACGTACAGCATATGATGGTTGAGCCACCACCTTTTGATATC
TACCTATGTGACAACTGTGATGCCGAACTTTATTCTAAAGAAGCTATACT
CGAACACGAAAACATTTGTTGCATGGAGGATGACGTTATACTTTGTGATT
CCCCTGAGCCAGATAACAAAAGTGATGGGAAAAACGAAGATATCGAACAG
CGCAACGCCTTTCTCTTAAACTTTAAACTGCAACCCAAATTCTCCGATAA
TAGTTTATCTAAAGAGAAACAGAAAACATATTCATTCAGCGAAGAAACAT
CAACGGAAACATCAAACAGAAAGAGGCGTTTACCATCGCGGAGAAATCGA
ACAGTTCATTCGTTTAGTAGGTGTTCGTTTATCCCAATATCATCACCTGC
AGGACAGCAATTGTTAAAATCGACAAAACAAACAATATCAATGGATTATA
TTGCGGAAAGACAGGAACGCCTGGAACGCTTTTGTTACACTCCATTGATC
AATAAATCAAATACCAAGCAAAAGTATTTTGAAAAAAAAACAAACACTAC
AGTGCATTGTACATTTAAAAAGTCACATGAACACAATTATCACATATATT
CCTTTCCGCGGCGTCAATTTGTTAAACGCAGGGACACTACTGAGAACTTT
TTGTTTTTGAACTCTCCGCTGATTAAACAATGCCGTCCAATATCAGTCAG
ATTGAAAAAAATATCCGAACACGTAATGGAAGAGCAAAATCACACTGCAA
ATACAAAACTCAATATAAGACTAACGCGCCACAATTCGCTCAACTCACAC
TGGAGAATTTCACCCACAAAGGAAGTTGTTGTTGATACAATTGACTTATG
CTCCTCGGACGACGATGAGCAACAAGAGCCAGCAATAGGCTCGCCCAAAA
GACTTGGCTCGGATGCACTGACTGTAATAAAACTTACACATAACAACAGA
AATTTGTACAGTAGCCGCGTCGTCGAGCCAAGTAAATGTGCTCCAGAGCC
AGAATCAGTAATAGTTGATAATTCGGTTAAGCCCCTACAGCAATCTTTAT
ATATTTATTCAAACTATAAGGCTAATTCAGTAATTAGTCGCTGTACCGTA
GACTCGATAGCCAATCATTCACTGGTTGGTTCCCTGAGTACATCGAATAC
TTTTGCTGATTCTGAGGGACACAGAAAGGAATACAATCAGGAAAACTGCA
ATTTTTCTAAGAACTTGGTCGCACTCACAGACTGGTACGCTCATTCGGCT
AATTCGAAAAAAAGCACTACAAATCAGACTACTGAGAGTAGTACGTTTGA
TGCGATTTCCGCGGCTCCGCCTTTCAATGGCACTGGGCGTATAATTTCCA
TTGATTTAACTTCTTAGACATTTTAATCCATAGTTAAGTTAAGAAATTGT
TATTTTACAAGAAAACCTAAACTAAGAATTACCATATATGAATAAATAAT
TTGTTTAAATACTTTTACAAAAAAAAAAAAAAAA

RE35195.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:40:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG5694-RA 2232 CG5694-RA 69..2185 1..2117 10585 100 Plus
CG5694-RB 2465 CG5694-RB 441..2418 140..2117 9890 100 Plus
CG5694.c 2265 CG5694.c 288..2264 141..2117 9885 100 Plus
CG5694-RB 2465 CG5694-RB 46..185 1..140 700 100 Plus
CG5694.c 2265 CG5694.c 4..143 1..140 700 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 13:10:31
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 10226612..10227977 2117..752 6830 100 Minus
chr2L 23010047 chr2L 10228556..10228807 391..140 1260 100 Minus
chr2L 23010047 chr2L 10228265..10228463 589..391 995 100 Minus
chr2L 23010047 chr2L 10228035..10228198 752..589 820 100 Minus
chr2L 23010047 chr2L 10230390..10230529 140..1 700 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:51:39 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 13:10:29
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10227761..10229126 2117..752 6830 100 Minus
2L 23513712 2L 10229705..10229956 391..140 1260 100 Minus
2L 23513712 2L 10229414..10229612 589..391 995 100 Minus
2L 23513712 2L 10229184..10229347 752..589 820 100 Minus
2L 23513712 2L 10231539..10231678 140..1 700 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:13:36
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10227761..10229126 2117..752 6830 100 Minus
2L 23513712 2L 10229705..10229956 391..140 1260 100 Minus
2L 23513712 2L 10229414..10229612 589..391 995 100 Minus
2L 23513712 2L 10229184..10229347 752..589 820 100 Minus
2L 23513712 2L 10231539..10231678 140..1 700 100 Minus
Blast to na_te.dros performed 2019-03-16 13:10:30
Subject Length Description Subject Range Query Range Score Percent Strand
rooA 7621 rooA ROOA_LTR 7621bp 2285..2359 888..962 122 65.8 Plus

RE35195.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 13:11:33 Download gff for RE35195.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 10230390..10230529 1..140 100   Minus
chr2L 10226640..10227977 752..2089 100 <- Minus
chr2L 10228036..10228197 590..751 100 <- Minus
chr2L 10228265..10228462 392..589 100 <- Minus
chr2L 10228556..10228806 141..391 100 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:11:44 Download gff for RE35195.complete
Subject Subject Range Query Range Percent Splice Strand
CG5694-RB 1..1872 146..2017 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:12:25 Download gff for RE35195.complete
Subject Subject Range Query Range Percent Splice Strand
CG5694-RB 1..1872 146..2017 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 11:52:22 Download gff for RE35195.complete
Subject Subject Range Query Range Percent Splice Strand
CG5694-RA 1..1872 146..2017 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:03:17 Download gff for RE35195.complete
Subject Subject Range Query Range Percent Splice Strand
CG5694-RB 1..1872 146..2017 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:10:22 Download gff for RE35195.complete
Subject Subject Range Query Range Percent Splice Strand
CG5694-RA 1..1872 146..2017 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:34:40 Download gff for RE35195.complete
Subject Subject Range Query Range Percent Splice Strand
CG5694-RA 12..2128 1..2118 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:12:25 Download gff for RE35195.complete
Subject Subject Range Query Range Percent Splice Strand
CG5694-RA 12..2128 1..2118 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:52:22 Download gff for RE35195.complete
Subject Subject Range Query Range Percent Splice Strand
CG5694-RA 15..2131 1..2118 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:03:18 Download gff for RE35195.complete
Subject Subject Range Query Range Percent Splice Strand
CG5694-RA 12..2128 1..2118 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:10:22 Download gff for RE35195.complete
Subject Subject Range Query Range Percent Splice Strand
CG5694-RA 15..2131 1..2118 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:11:33 Download gff for RE35195.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10227760..10229126 752..2118 99 <- Minus
2L 10229185..10229346 590..751 100 <- Minus
2L 10229414..10229611 392..589 100 <- Minus
2L 10229705..10229955 141..391 100 <- Minus
2L 10231539..10231678 1..140 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:11:33 Download gff for RE35195.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10227760..10229126 752..2118 99 <- Minus
2L 10229185..10229346 590..751 100 <- Minus
2L 10229414..10229611 392..589 100 <- Minus
2L 10229705..10229955 141..391 100 <- Minus
2L 10231539..10231678 1..140 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:11:33 Download gff for RE35195.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10227760..10229126 752..2118 99 <- Minus
2L 10229185..10229346 590..751 100 <- Minus
2L 10229414..10229611 392..589 100 <- Minus
2L 10229705..10229955 141..391 100 <- Minus
2L 10231539..10231678 1..140 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:52:22 Download gff for RE35195.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10231539..10231678 1..140 100   Minus
arm_2L 10229414..10229611 392..589 100 <- Minus
arm_2L 10227760..10229126 752..2118 99 <- Minus
arm_2L 10229185..10229346 590..751 100 <- Minus
arm_2L 10229705..10229955 141..391 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:35:01 Download gff for RE35195.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10227760..10229126 752..2118 99 <- Minus
2L 10229185..10229346 590..751 100 <- Minus
2L 10229705..10229955 141..391 100 <- Minus
2L 10231539..10231678 1..140 100   Minus
2L 10229414..10229611 392..589 100 <- Minus

RE35195.pep Sequence

Translation from 145 to 2016

> RE35195.pep
MDEKDKAQHNMISNLPLLFANGYPTSLEKITESQLENFIPFMVQCSLGHI
NLPKKIDCSEPEWWPESAPFEIPLKKPKAFVGNWMEKMKEIVVICYQFHK
SLFLLRFCNDLAAYEHASLRFINNYNSTTSLYDRRNNKLLVTFRNENMSY
DRQQKNRKCLLLQKNNSSISENVQHMMVEPPPFDIYLCDNCDAELYSKEA
ILEHENICCMEDDVILCDSPEPDNKSDGKNEDIEQRNAFLLNFKLQPKFS
DNSLSKEKQKTYSFSEETSTETSNRKRRLPSRRNRTVHSFSRCSFIPISS
PAGQQLLKSTKQTISMDYIAERQERLERFCYTPLINKSNTKQKYFEKKTN
TTVHCTFKKSHEHNYHIYSFPRRQFVKRRDTTENFLFLNSPLIKQCRPIS
VRLKKISEHVMEEQNHTANTKLNIRLTRHNSLNSHWRISPTKEVVVDTID
LCSSDDDEQQEPAIGSPKRLGSDALTVIKLTHNNRNLYSSRVVEPSKCAP
EPESVIVDNSVKPLQQSLYIYSNYKANSVISRCTVDSIANHSLVGSLSTS
NTFADSEGHRKEYNQENCNFSKNLVALTDWYAHSANSKKSTTNQTTESST
FDAISAAPPFNGTGRIISIDLTS*

RE35195.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 22:29:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19656-PA 621 GF19656-PA 1..621 1..623 2741 84.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 22:29:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23968-PA 621 GG23968-PA 1..621 1..623 3110 93.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 22:29:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13366-PA 634 GH13366-PA 1..634 1..623 1949 63.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:09:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG5694-PB 623 CG5694-PB 1..623 1..623 3290 100 Plus
CG5694-PA 623 CG5694-PA 1..623 1..623 3290 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 22:29:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17620-PA 613 GI17620-PA 1..613 1..623 2013 65.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 22:29:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14798-PA 413 GL14798-PA 1..413 210..623 1488 69.3 Plus
Dper\GL14797-PA 93 GL14797-PA 1..82 1..82 414 90.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 22:29:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19063-PA 420 GA19063-PA 1..420 203..623 1531 69.8 Plus
Dpse\GA23189-PA 207 GA23189-PA 1..203 1..202 1015 91.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 22:29:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11935-PA 623 GM11935-PA 1..623 1..623 3251 97 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 22:29:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22292-PA 623 GD22292-PA 1..623 1..623 3248 97 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 22:29:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17532-PA 466 GJ17532-PA 1..466 149..623 1329 59.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 22:29:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15269-PA 673 GK15269-PA 1..673 1..623 2227 67.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 22:29:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE26307-PA 621 GE26307-PA 1..621 1..623 3153 94.7 Plus

RE35195.hyp Sequence

Translation from 145 to 2016

> RE35195.hyp
MDEKDKAQHNMISNLPLLFANGYPTSLEKITESQLENFIPFMVQCSLGHI
NLPKKIDCSEPEWWPESAPFEIPLKKPKAFVGNWMEKMKEIVVICYQFHK
SLFLLRFCNDLAAYEHASLRFINNYNSTTSLYDRRNNKLLVTFRNENMSY
DRQQKNRKCLLLQKNNSSISENVQHMMVEPPPFDIYLCDNCDAELYSKEA
ILEHENICCMEDDVILCDSPEPDNKSDGKNEDIEQRNAFLLNFKLQPKFS
DNSLSKEKQKTYSFSEETSTETSNRKRRLPSRRNRTVHSFSRCSFIPISS
PAGQQLLKSTKQTISMDYIAERQERLERFCYTPLINKSNTKQKYFEKKTN
TTVHCTFKKSHEHNYHIYSFPRRQFVKRRDTTENFLFLNSPLIKQCRPIS
VRLKKISEHVMEEQNHTANTKLNIRLTRHNSLNSHWRISPTKEVVVDTID
LCSSDDDEQQEPAIGSPKRLGSDALTVIKLTHNNRNLYSSRVVEPSKCAP
EPESVIVDNSVKPLQQSLYIYSNYKANSVISRCTVDSIANHSLVGSLSTS
NTFADSEGHRKEYNQENCNFSKNLVALTDWYAHSANSKKSTTNQTTESST
FDAISAAPPFNGTGRIISIDLTS*

RE35195.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:03:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG5694-PB 623 CG5694-PB 1..623 1..623 3290 100 Plus
CG5694-PA 623 CG5694-PA 1..623 1..623 3290 100 Plus