BDGP Sequence Production Resources |
Search the DGRC for RE35228
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 352 |
Well: | 28 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Lint-1-RA |
Protein status: | RE35228.pep: gold |
Preliminary Size: | 2052 |
Sequenced Size: | 2274 |
Gene | Date | Evidence |
---|---|---|
CG1908 | 2001-12-17 | Blastp of sequenced clone |
CG1908 | 2002-01-01 | Sim4 clustering to Release 2 |
CG1908 | 2003-01-01 | Sim4 clustering to Release 3 |
CG1908 | 2008-04-29 | Release 5.5 accounting |
CG1908 | 2008-08-15 | Release 5.9 accounting |
CG1908 | 2008-12-18 | 5.12 accounting |
2274 bp (2274 high quality bases) assembled on 2001-12-17
GenBank Submission: AY071333
> RE35228.complete ATCTATCTGGCAACGCCACCAGTTGATGCAACACATTTTTATCTTAAATT GCGAAGTTCCTCGGCCAGATATCAGTTACGAATGTAGTGATCAATCTATC ACATTTTCTAGCCACATTCGGTTTCAATTCCCACCCCACTCCCTTTCGAA AATTTGCCCAAAATTCCCACAAGTGCATCAATTGCAACGCATCCGAAATC AGTCGCGTGCGTGATTCGTACGATAACCGTCGTTATATATATAGCGTCAA TATAATCGGAACAAGATGAGCAAGTACCATAAGGAGCGCAAGTACGCCAA GTTCAGGTACTACATGGAGAAGTACTACGTGCTGCCGCTGGAGCTGAAGA ACGACATCATCTACTGCCAGCGATCGCTGCGCGATTTCCTCAAGGTTCAC GCGTTGGTCTCGGAGGTCTTCGATGAGCAGGCGGATGCGGATCCAGTGCA GATGCGTCGCATCTTGGACGAACTGGAGGAGGAGGTGTACGAGATCAATG CCGAGCAGCAGTTCCTTCTGCTACGCCTCAACGATAGCCTACAGGAATTC TCCGTGAAGCTGAAGGAGAACAACATCATGTTCCTGCCGGACATCGCCCA TGAGTACGTTTCCGCCCAGGTAGTGCCTTTGATCGTCGATCCCAACTATA AGATTATGCCACAGTCGGTGATGGCTCGTGATACCGAGGAGATGCTTATT CGCAAGCACTTCCTGCTGAGCCAGGACGATGATTCTGGTATGCCGCCGCT TAAGCTCAGCGAATTGGATGAGAATATACCATTGATGCTGGCTCCGCCGG TTAGGGGATTGGGTCAGCAGATCGCCGCCGTTAAGCCGGAGCCAGAGTGG CTCCAAGGCGATGAGGCGACAGTATCAGTGCCACCGCCGCCGCCACAATC GAAGTCGAAGCTGATGAAAGGGTCGCTGGATTCGACCCCGGCCAAGCGAG AGAATATCAGCCGCAGCTCACCGCCGCCCTTGGCGCCTATAACCCAAACC GTAGTGGCTGAGTTGTCACAAGTACCTCCATCACCACAAGCAGAATCTCC ACCAGTAAACTTTCACGTTGTGGCCCAGAGTCGCAAGAACTTGCAGCAGG CATTGAGAAGGGCCAGAAAGACGAAGCAGCAGCCACGTTTGTTCGACGAC GAGGAGGACCTGGAGATCACCAGTTTGCAGAACGATCGCAACAAGAACAG AACCAGCGATGGCAAGGGGACACCGCCATCGCTGGAGCCAACGAATGCTG CCGCCAATCAGGCAGCCAAGAAGACCATCCCACAAATGTCTAGTCAGGGG ATGGCGAAGAATAATACCGCGAAGAGCAAAAACACGTGCAGGAAATCCTC GCCAACGCCCACATCCAGTGGACAGTCGCAGCCAGCGGTATCGTCATCCG GCAGCTCCGATGATTCCAGTGCCGAGCTGCAGCAGGAGCAGCAAAGACGC GTCGCATCCGCCGCCCAGTGGCGCGATGAGCCGCGCGAGAGCCGCACCCA GCCGGAGGAGTACGGCCAGGAGACGTTCCTCGGCCTCTTTGAGCTCTACT CGCCGGAGGTGCTCAAGAAGCTCAGTCAGCGCCACTCGAAGCGCAAGCGT CGCACCGTTCAGAATGCCAGCGGAGTGGATTTTCACTATGGCCAGCAGTT GAATGCCGTGGACGCGTTAGTCATGGGCGTTCGTGGTCAGAAGAAGACCA AGGAGAAGTCCGAATTCCTGCTCTCGCCGACGGAAAAACGTTTGCAGGCC AACTCGAAGAGGACGTACACACGCAAGAGCAAGTCGCCGGACGAGATTTC GGAGAAGAGCAGCGCAGGAGGAGGATCTGGCGCATCGGGAACTGCGTCTT CATCAGCCTGTCAGCATAAAGACGGCGGTGCCTCCAAGTGCCGCAAATGC CGCGAGTGCCGTGAATGCAAACGTCGTGTGGAAACCGAAGCGATGTACTG CCACTTGTGCAGCGGATTATACCACATGGACTGCCACGAGTTCACCAAAA ATCGCCAGCTGATGCAGCTGCAGAACTCTCGCTGCCCCCCATGCTTGCGC GAAAAAGATAAGTTGGAGAAGTAGTGCGTTGCCAAGTGAGCCATTGATGT TAAATGTTTCTCATTCTTGCATAAAGGATTGTATATATTTGAATCAACCC TAGTTGGTATGCTGAGTTCGTGTTTTTATATTAAAATTTATTATTACTTA AATGATTATATGATTATATAAATGATTATTATATTCTTATTTTATAAATA TACTAATTAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG1908-RA | 2446 | CG1908-RA | 127..2388 | 1..2262 | 11295 | 99.9 | Plus |
CG1908.d | 2320 | CG1908.d | 471..2296 | 437..2262 | 9130 | 100 | Plus |
CG1908.a | 2179 | CG1908.a | 333..2155 | 440..2262 | 9115 | 100 | Plus |
CG1908.d | 2320 | CG1908.d | 71..473 | 1..403 | 2000 | 99.7 | Plus |
CG1908.a | 2179 | CG1908.a | 1..179 | 262..440 | 895 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 11041884..11043376 | 439..1931 | 7225 | 98.9 | Plus |
chrX | 22417052 | chrX | 11040699..11041101 | 1..403 | 1970 | 99.3 | Plus |
chrX | 22417052 | chrX | 11043490..11043817 | 1931..2258 | 1610 | 99.4 | Plus |
chrU | 10048995 | chrU | 3540677..3540732 | 2155..2210 | 250 | 96.4 | Plus |
chr2LHet | 368865 | chr2LHet | 133032..133087 | 2155..2210 | 250 | 96.4 | Plus |
chr3L | 24539361 | chr3L | 24519425..24519481 | 2155..2211 | 240 | 94.7 | Plus |
chr3LHet | 2555433 | chr3LHet | 379714..379769 | 2210..2155 | 235 | 94.6 | Minus |
chr3L | 24539361 | chr3L | 23585676..23585731 | 2155..2210 | 220 | 92.9 | Plus |
chr3L | 24539361 | chr3L | 23724690..23724745 | 2210..2155 | 220 | 92.9 | Minus |
chr3LHet | 2555433 | chr3LHet | 2392834..2392889 | 2155..2210 | 220 | 92.9 | Plus |
chr2RHet | 3288813 | chr2RHet | 466267..466322 | 2210..2155 | 220 | 92.9 | Minus |
chrX | 22417052 | chrX | 11041174..11041211 | 403..440 | 190 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23542271 | X | 11150635..11152127 | 439..1931 | 7465 | 100 | Plus |
X | 23542271 | X | 11149449..11149851 | 1..403 | 2000 | 99.8 | Plus |
X | 23542271 | X | 11152237..11152568 | 1931..2262 | 1660 | 100 | Plus |
2L | 23513712 | 2L | 23246425..23246480 | 2155..2210 | 250 | 96.4 | Plus |
2L | 23513712 | 2L | 23262230..23262285 | 2155..2210 | 250 | 96.4 | Plus |
2L | 23513712 | 2L | 23277500..23277555 | 2155..2210 | 250 | 96.4 | Plus |
3L | 28110227 | 3L | 24530520..24530576 | 2155..2211 | 240 | 94.7 | Plus |
3L | 28110227 | 3L | 24896384..24896439 | 2210..2155 | 235 | 94.6 | Minus |
3L | 28110227 | 3L | 23596764..23596819 | 2155..2210 | 220 | 92.9 | Plus |
3L | 28110227 | 3L | 23735784..23735839 | 2210..2155 | 220 | 92.9 | Minus |
3L | 28110227 | 3L | 27262336..27262391 | 2155..2210 | 220 | 92.9 | Plus |
2R | 25286936 | 2R | 1339572..1339627 | 2210..2155 | 220 | 92.9 | Minus |
X | 23542271 | X | 11149924..11149961 | 403..440 | 190 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23527363 | X | 11158733..11160225 | 439..1931 | 7465 | 100 | Plus |
X | 23527363 | X | 11157547..11157949 | 1..403 | 2000 | 99.7 | Plus |
X | 23527363 | X | 11160335..11160666 | 1931..2262 | 1660 | 100 | Plus |
2L | 23513712 | 2L | 23277500..23277555 | 2155..2210 | 250 | 96.4 | Plus |
2L | 23513712 | 2L | 23262230..23262285 | 2155..2210 | 250 | 96.4 | Plus |
2L | 23513712 | 2L | 23246425..23246480 | 2155..2210 | 250 | 96.4 | Plus |
3L | 28103327 | 3L | 24523620..24523676 | 2155..2211 | 240 | 94.7 | Plus |
3L | 28103327 | 3L | 24889484..24889539 | 2210..2155 | 235 | 94.6 | Minus |
3L | 28103327 | 3L | 27255436..27255491 | 2155..2210 | 220 | 92.8 | Plus |
3L | 28103327 | 3L | 23589864..23589919 | 2155..2210 | 220 | 92.8 | Plus |
3L | 28103327 | 3L | 23728884..23728939 | 2210..2155 | 220 | 92.8 | Minus |
2R | 25260384 | 2R | 1339572..1339627 | 2210..2155 | 220 | 92.8 | Minus |
X | 23527363 | X | 11158022..11158059 | 403..440 | 190 | 100 | Plus |
2R | 25260384 | 2R | 4618879..4618932 | 2157..2210 | 180 | 88.8 | Plus |
2R | 25260384 | 2R | 4618934..4618964 | 2228..2258 | 155 | 100 | Plus |
2R | 25260384 | 2R | 1339540..1339570 | 2258..2228 | 155 | 100 | Minus |
3L | 28103327 | 3L | 24523676..24523707 | 2227..2258 | 145 | 96.8 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 11040699..11041101 | 1..403 | 99 | -> | Plus |
chrX | 11041175..11041210 | 404..439 | 100 | -> | Plus |
chrX | 11041885..11043376 | 440..1931 | 98 | -> | Plus |
chrX | 11043491..11043728 | 1932..2169 | 99 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1908-RA | 1..1809 | 266..2074 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1908-RA | 1..1809 | 266..2074 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Lint-1-RA | 1..1809 | 266..2074 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1908-RA | 1..1809 | 266..2074 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Lint-1-RA | 1..1809 | 266..2074 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1908-RA | 1..2258 | 1..2258 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1908-RA | 1..2258 | 1..2258 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Lint-1-RA | 6..2263 | 1..2258 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1908-RA | 1..2258 | 1..2258 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Lint-1-RA | 6..2263 | 1..2258 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 11149449..11149851 | 1..403 | 99 | -> | Plus |
X | 11149925..11149960 | 404..439 | 100 | -> | Plus |
X | 11150636..11152127 | 440..1931 | 100 | -> | Plus |
X | 11152238..11152564 | 1932..2258 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 11149449..11149851 | 1..403 | 99 | -> | Plus |
X | 11149925..11149960 | 404..439 | 100 | -> | Plus |
X | 11150636..11152127 | 440..1931 | 100 | -> | Plus |
X | 11152238..11152564 | 1932..2258 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 11149449..11149851 | 1..403 | 99 | -> | Plus |
X | 11149925..11149960 | 404..439 | 100 | -> | Plus |
X | 11150636..11152127 | 440..1931 | 100 | -> | Plus |
X | 11152238..11152564 | 1932..2258 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 11043482..11043884 | 1..403 | 99 | -> | Plus |
arm_X | 11043958..11043993 | 404..439 | 100 | -> | Plus |
arm_X | 11044669..11046160 | 440..1931 | 100 | -> | Plus |
arm_X | 11046271..11046597 | 1932..2258 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 11157547..11157949 | 1..403 | 99 | -> | Plus |
X | 11158023..11158058 | 404..439 | 100 | -> | Plus |
X | 11158734..11160225 | 440..1931 | 100 | -> | Plus |
X | 11160336..11160662 | 1932..2258 | 100 | Plus |
Translation from 265 to 2073
> RE35228.hyp MSKYHKERKYAKFRYYMEKYYVLPLELKNDIIYCQRSLRDFLKVHALVSE VFDEQADADPVQMRRILDELEEEVYEINAEQQFLLLRLNDSLQEFSVKLK ENNIMFLPDIAHEYVSAQVVPLIVDPNYKIMPQSVMARDTEEMLIRKHFL LSQDDDSGMPPLKLSELDENIPLMLAPPVRGLGQQIAAVKPEPEWLQGDE ATVSVPPPPPQSKSKLMKGSLDSTPAKRENISRSSPPPLAPITQTVVAEL SQVPPSPQAESPPVNFHVVAQSRKNLQQALRRARKTKQQPRLFDDEEDLE ITSLQNDRNKNRTSDGKGTPPSLEPTNAAANQAAKKTIPQMSSQGMAKNN TAKSKNTCRKSSPTPTSSGQSQPAVSSSGSSDDSSAELQQEQQRRVASAA QWRDEPRESRTQPEEYGQETFLGLFELYSPEVLKKLSQRHSKRKRRTVQN ASGVDFHYGQQLNAVDALVMGVRGQKKTKEKSEFLLSPTEKRLQANSKRT YTRKSKSPDEISEKSSAGGGSGASGTASSSACQHKDGGASKCRKCRECRE CKRRVETEAMYCHLCSGLYHMDCHEFTKNRQLMQLQNSRCPPCLREKDKL EK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Lint-1-PE | 602 | CG1908-PE | 1..602 | 1..602 | 3109 | 100 | Plus |
Lint-1-PA | 602 | CG1908-PA | 1..602 | 1..602 | 3109 | 100 | Plus |
Lint-1-PD | 540 | CG1908-PD | 1..540 | 63..602 | 2782 | 100 | Plus |
Lint-1-PC | 540 | CG1908-PC | 1..540 | 63..602 | 2782 | 100 | Plus |
Translation from 265 to 2073
> RE35228.pep MSKYHKERKYAKFRYYMEKYYVLPLELKNDIIYCQRSLRDFLKVHALVSE VFDEQADADPVQMRRILDELEEEVYEINAEQQFLLLRLNDSLQEFSVKLK ENNIMFLPDIAHEYVSAQVVPLIVDPNYKIMPQSVMARDTEEMLIRKHFL LSQDDDSGMPPLKLSELDENIPLMLAPPVRGLGQQIAAVKPEPEWLQGDE ATVSVPPPPPQSKSKLMKGSLDSTPAKRENISRSSPPPLAPITQTVVAEL SQVPPSPQAESPPVNFHVVAQSRKNLQQALRRARKTKQQPRLFDDEEDLE ITSLQNDRNKNRTSDGKGTPPSLEPTNAAANQAAKKTIPQMSSQGMAKNN TAKSKNTCRKSSPTPTSSGQSQPAVSSSGSSDDSSAELQQEQQRRVASAA QWRDEPRESRTQPEEYGQETFLGLFELYSPEVLKKLSQRHSKRKRRTVQN ASGVDFHYGQQLNAVDALVMGVRGQKKTKEKSEFLLSPTEKRLQANSKRT YTRKSKSPDEISEKSSAGGGSGASGTASSSACQHKDGGASKCRKCRECRE CKRRVETEAMYCHLCSGLYHMDCHEFTKNRQLMQLQNSRCPPCLREKDKL EK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF22586-PA | 600 | GF22586-PA | 4..588 | 10..595 | 1723 | 62 | Plus |
Dana\GF25297-PA | 276 | GF25297-PA | 38..191 | 13..164 | 293 | 39.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG18396-PA | 603 | GG18396-PA | 1..603 | 1..602 | 2284 | 79 | Plus |
Dere\GG15536-PA | 278 | GG15536-PA | 42..180 | 13..151 | 300 | 41.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH12507-PA | 692 | GH12507-PA | 38..200 | 13..176 | 632 | 68.9 | Plus |
Dgri\GH12507-PA | 692 | GH12507-PA | 528..678 | 369..513 | 392 | 60.3 | Plus |
Dgri\GH16720-PA | 503 | GH16720-PA | 239..389 | 13..163 | 242 | 32.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Lint-1-PE | 602 | CG1908-PE | 1..602 | 1..602 | 3109 | 100 | Plus |
Lint-1-PA | 602 | CG1908-PA | 1..602 | 1..602 | 3109 | 100 | Plus |
Lint-1-PD | 540 | CG1908-PD | 1..540 | 63..602 | 2782 | 100 | Plus |
Lint-1-PC | 540 | CG1908-PC | 1..540 | 63..602 | 2782 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI14860-PA | 613 | GI14860-PA | 16..600 | 13..596 | 1169 | 46 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL20251-PA | 629 | GL20251-PA | 14..625 | 8..594 | 1230 | 46.6 | Plus |
Dper\GL25101-PA | 261 | GL25101-PA | 38..186 | 13..164 | 271 | 37.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA15124-PA | 653 | GA15124-PA | 14..627 | 8..596 | 1241 | 47.8 | Plus |
Dpse\GA23681-PA | 261 | GA23681-PA | 38..186 | 13..164 | 271 | 37.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM11462-PA | 602 | GM11462-PA | 1..602 | 1..602 | 2706 | 92 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ19523-PA | 691 | GJ19523-PA | 18..207 | 13..202 | 663 | 64.9 | Plus |
Dvir\GJ19523-PA | 691 | GJ19523-PA | 478..678 | 387..596 | 498 | 50.2 | Plus |
Dvir\GJ11669-PA | 303 | GJ11669-PA | 38..179 | 13..154 | 289 | 40.1 | Plus |