Clone RE35255 Report

Search the DGRC for RE35255

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:352
Well:55
Vector:pFlc-1
Associated Gene/TranscriptCG14646-RA
Protein status:RE35255.pep: gold
Sequenced Size:1589

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG14646 2003-01-01 Sim4 clustering to Release 3
CG14646 2008-04-29 Release 5.5 accounting
CG14646 2008-08-15 Release 5.9 accounting
CG14646 2008-12-18 5.12 accounting

Clone Sequence Records

RE35255.complete Sequence

1589 bp (1589 high quality bases) assembled on 2004-12-16

GenBank Submission: BT021284

> RE35255.complete
TAGTGTTCGACGAAACCACTGAGCCAAACAAAATCCGAAATTATTCGCAA
CATGGACGAGTCGGAGCTGCTATTCAATCTGTTTTATATTCTGTTGTGCA
TGGTGATCATCTACCCGCCAGAGGAGTTCCAACGCCTGGGATTCACCATT
GAACAGTTGTTCGCTCGGTTCCTGGGAGAAGAGTACCTGGACTTTGTAGG
CTACCACCAGCGCCGTACTTCGCTGAATCTCTTCGTGCACTCCTGTCTGC
CCTTCTCCTACTTTCTTATTCATAGGCTCAAGTTCTCCGTCTTCGCCACG
CAGGAGCCCTTGGAGGACTTCGACCTGGACCCGGATTTCCCCATGCCCCA
GGAAGCGGTAGCGTTTAAAACGCTTACGTGGAAAACCGCCCAGCGGTTCA
GTGTGTTGGCCGTTCTGGCGATGCCCGCTCTGATCTTCAACTGGCACCAG
GAAAACTGGCGTCGGCACCCGATCAGCAAGGCGCTCTCCAAGTACTCCAT
CACGCCGGGCAGCTACAGTGCCGTGGCTAGCGAAATTGGTATAGAGTTCC
GGCAACCGGAAATATACAAGAAGAAGCTAAATTCCATTAGCTCGGTGATT
GCCACGCAGAACTGGATAATAAAAACCACCATGTACAATGTTCACTTCGC
CCATCAGAGCAACACGTCGCTTAGCGTAGCTAAGGCAGAAACTTACAACA
TATCGCATCAAGACCAAAACGACACCTTGCAGATGATAAGCATTATTGTA
CGGCCAATGAGGCAGGGTGTGAGCGACTTCCACATACGAATTAATGCCCT
GGAGTTTAGGAATCTAGAGAACCGAGTCCGACGACCAATCGCAATTCCCT
CCAACATTCAGTTACACCGCAATGTTATAGACCGTTTTGTGGACGTCTTC
AAGGCGCAAGTCGCCCAAAATCCCATTTTTCCAGATGATGCTACTACGGA
AAAGTGTTTTGCCTGCATGCTAAACGAACCAAACACCAAGATCCACAAGC
AGTGTGCCGACTTTGATCGCAATGGCGCTCCCTTGGCGAACGGGGCGTGC
TGCTCAAACTGCTACTGCCGGCCCATGTGGTGTGTAGAGTGCCTAGCGCG
CTGGTTTGCCGCTCGCCAAAGTGACGTGGATCGTGAGGTGTGGCTGGAGC
AGAAGTGCACATGCCCAATGTGCCGAGCCAAGTTTTGTGTGCTTGATGTC
AGCTACATCACAACCACAGTCGATGCAACTAACAGTACTCAGAGTCAAGG
CACCGAAGAAGATACTAATGACACCACGTGATTTATGACTGTTAGAGATT
AAAGGACTCTTAAATCGAACCTGGTTCTTTATTGGTCTTATTTAAGTGTA
ATCATTTTCAATACAGTAAGACGTACAATTATATAGCTATAAACTTATAA
ATATGCATAGTAATTAGTGCACTTATCACTTTTTAATACTTTAACAATCT
AAGCAATCCTAATATTTTTATTTTACTTAAGTACAATTGATCTAAGCATA
GACAGAAAGAGTGTTCATATGAGAAATATGCCTTAATATGCTCTGCATAG
GAAACCTGTAGTGCAATAAGTCCAAAAAAAAAAAAAAAA

RE35255.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:50:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG14646-RB 1854 CG14646-RB 132..1705 1..1574 7870 100 Plus
CG14646-RA 1854 CG14646-RA 132..1705 1..1574 7870 100 Plus
CG14646.b 1626 CG14646.b 245..1515 304..1574 6355 100 Plus
CG14646.b 1626 CG14646.b 1..245 1..245 1225 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 20:16:02
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 216828..217718 683..1573 4455 100 Plus
chr3R 27901430 chr3R 216094..216778 1..685 3425 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed 2010-04-22 20:51:45
Subject Length Description Subject Range Query Range Score Percent Strand
CR41470-RA 811 CR41470-RA 329..811 1574..1092 2415 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 20:16:00
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4391109..4392000 683..1574 4460 100 Plus
3R 32079331 3R 4390375..4391059 1..685 3425 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:40:09
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 4131940..4132831 683..1574 4460 100 Plus
3R 31820162 3R 4131206..4131890 1..685 3425 100 Plus
Blast to na_te.dros performed on 2019-03-15 20:16:00 has no hits.

RE35255.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 20:16:39 Download gff for RE35255.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 216094..216777 1..684 100 -> Plus
chr3R 216830..217718 685..1573 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:11:50 Download gff for RE35255.complete
Subject Subject Range Query Range Percent Splice Strand
CG14646-RA 1..1230 52..1281 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:22:05 Download gff for RE35255.complete
Subject Subject Range Query Range Percent Splice Strand
CG14646-RB 1..1230 52..1281 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 05:10:07 Download gff for RE35255.complete
Subject Subject Range Query Range Percent Splice Strand
CG14646-RA 1..1230 52..1281 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:06:02 Download gff for RE35255.complete
Subject Subject Range Query Range Percent Splice Strand
CG14646-RA 1..1230 52..1281 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:19:06 Download gff for RE35255.complete
Subject Subject Range Query Range Percent Splice Strand
CG14646-RA 1..1230 52..1281 100   Plus
Sim4 to dmel-all-all_noncoding-r5.12.fasta performed 2010-04-22 20:51:46 Download gff for RE35255.complete
Subject Subject Range Query Range Percent Splice Strand
CR41470-RA 330..811 1092..1573 100   Minus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:23:15 Download gff for RE35255.complete
Subject Subject Range Query Range Percent Splice Strand
CG14646-RA 1..1573 1..1573 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:22:05 Download gff for RE35255.complete
Subject Subject Range Query Range Percent Splice Strand
CG14646-RA 1..1573 1..1573 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:10:07 Download gff for RE35255.complete
Subject Subject Range Query Range Percent Splice Strand
CG14646-RA 10..1582 1..1573 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:06:02 Download gff for RE35255.complete
Subject Subject Range Query Range Percent Splice Strand
CG14646-RA 1..1573 1..1573 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:19:06 Download gff for RE35255.complete
Subject Subject Range Query Range Percent Splice Strand
CG14646-RA 10..1582 1..1573 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:16:39 Download gff for RE35255.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4391111..4391999 685..1573 100   Plus
3R 4390375..4391058 1..684 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:16:39 Download gff for RE35255.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4391111..4391999 685..1573 100   Plus
3R 4390375..4391058 1..684 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:16:39 Download gff for RE35255.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4391111..4391999 685..1573 100   Plus
3R 4390375..4391058 1..684 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:10:07 Download gff for RE35255.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 216097..216780 1..684 100 -> Plus
arm_3R 216833..217721 685..1573 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:42:26 Download gff for RE35255.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4131206..4131889 1..684 100 -> Plus
3R 4131942..4132830 685..1573 100   Plus

RE35255.pep Sequence

Translation from 51 to 1280

> RE35255.pep
MDESELLFNLFYILLCMVIIYPPEEFQRLGFTIEQLFARFLGEEYLDFVG
YHQRRTSLNLFVHSCLPFSYFLIHRLKFSVFATQEPLEDFDLDPDFPMPQ
EAVAFKTLTWKTAQRFSVLAVLAMPALIFNWHQENWRRHPISKALSKYSI
TPGSYSAVASEIGIEFRQPEIYKKKLNSISSVIATQNWIIKTTMYNVHFA
HQSNTSLSVAKAETYNISHQDQNDTLQMISIIVRPMRQGVSDFHIRINAL
EFRNLENRVRRPIAIPSNIQLHRNVIDRFVDVFKAQVAQNPIFPDDATTE
KCFACMLNEPNTKIHKQCADFDRNGAPLANGACCSNCYCRPMWCVECLAR
WFAARQSDVDREVWLEQKCTCPMCRAKFCVLDVSYITTTVDATNSTQSQG
TEEDTNDTT*

RE35255.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 16:53:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18212-PA 403 GF18212-PA 1..401 1..402 1867 87.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 16:53:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12373-PA 409 GG12373-PA 1..409 1..409 2007 92.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 16:53:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14078-PA 402 GH14078-PA 1..386 1..386 1766 85.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:27:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG14646-PB 409 CG14646-PB 1..409 1..409 2184 100 Plus
CG14646-PA 409 CG14646-PA 1..409 1..409 2184 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 16:53:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10611-PA 399 GI10611-PA 1..399 1..401 1739 81.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 16:53:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21463-PA 401 GL21463-PA 1..386 1..386 1753 85.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 16:53:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13144-PA 401 GA13144-PA 1..386 1..386 1757 85.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 16:53:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10752-PA 409 GM10752-PA 1..409 1..409 2075 95.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 16:53:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19727-PA 286 GD19727-PA 1..286 124..409 1487 95.1 Plus
Dsim\GD19726-PA 105 GD19726-PA 1..104 1..104 534 97.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 16:53:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22965-PA 400 GJ22965-PA 1..400 1..401 1776 83.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 16:53:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13531-PA 407 GK13531-PA 1..404 1..402 1804 84.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 16:53:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25414-PA 409 GE25414-PA 1..409 1..409 2023 93.6 Plus

RE35255.hyp Sequence

Translation from 51 to 1280

> RE35255.hyp
MDESELLFNLFYILLCMVIIYPPEEFQRLGFTIEQLFARFLGEEYLDFVG
YHQRRTSLNLFVHSCLPFSYFLIHRLKFSVFATQEPLEDFDLDPDFPMPQ
EAVAFKTLTWKTAQRFSVLAVLAMPALIFNWHQENWRRHPISKALSKYSI
TPGSYSAVASEIGIEFRQPEIYKKKLNSISSVIATQNWIIKTTMYNVHFA
HQSNTSLSVAKAETYNISHQDQNDTLQMISIIVRPMRQGVSDFHIRINAL
EFRNLENRVRRPIAIPSNIQLHRNVIDRFVDVFKAQVAQNPIFPDDATTE
KCFACMLNEPNTKIHKQCADFDRNGAPLANGACCSNCYCRPMWCVECLAR
WFAARQSDVDREVWLEQKCTCPMCRAKFCVLDVSYITTTVDATNSTQSQG
TEEDTNDTT*

RE35255.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:20:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG14646-PB 409 CG14646-PB 1..409 1..409 2184 100 Plus
CG14646-PA 409 CG14646-PA 1..409 1..409 2184 100 Plus