Clone RE35395 Report

Search the DGRC for RE35395

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:353
Well:95
Vector:pFlc-1
Associated Gene/TranscriptElp3-RA
Protein status:RE35395.pep: gold
Sequenced Size:1877

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG15433 2002-01-01 Sim4 clustering to Release 2
CG15433 2002-02-22 Blastp of sequenced clone
CG15433 2003-01-01 Sim4 clustering to Release 3
Elp3 2008-04-29 Release 5.5 accounting
Elp3 2008-08-15 Release 5.9 accounting
Elp3 2008-12-18 5.12 accounting

Clone Sequence Records

RE35395.complete Sequence

1877 bp (1877 high quality bases) assembled on 2002-02-22

GenBank Submission: AY089621

> RE35395.complete
ATTGGTCGGTCGATAACCGAATCAAAACAAGTGCTGCTAACTTCACACGT
GCAGTTTATGTGATATTCATCAGCAAAATGAAGGCAAAAAAGAAGTTGGG
CGTGGGATTGAGCCGCCAGGAACGACAGGTGCTCGTCATCGGGGAGATCA
TTCAGGAGCTGCTGAAGGCGCACGAAGCCAAAAAGGATGTAAACCTTAAT
CGGATGAAATCATTGGTGGCCTCCAAATATGGACTGGACAGTTCGCCGCG
CCTGGTCGACATAATTGCTGCCGTGCCGCAGGACGCCAAAAAAATTCTGC
TTCCAAAGCTGAGGGCAAAGCCCATTCGCACAGCAAGTGGCATCGCCGTG
GTCGCCGTCATGTGCAAGCCGCATCGTTGTCCGCACATCAATATGACCGG
CAATATATGCGTCTATTGTCCCGGCGGACCGGACAGCGACTTTGAGTACT
CGACACAGTCGTACACAGGCTACGAGCCGACCTCGATGCGAGCCATCCGG
TCGCGGTACGATCCTTTTCTTCAGACCCGACACCGCGTTGAACAGCTGAA
GCAGCTGGGACACAGTGTGGACAAGGTGGAGTTCATCGTAATGGGCGGTA
CGTTCATGTGCCTGCCGGAGGAGTACCGCGACTACTTTATCCGCAACCTA
CACGACGCCCTCTCCGGCCACAGCAGCGCCAATGTGGCGGAAGCCGTACG
CTACTCGGAGAAGTCACGCACAAAGTGCATTGGCATCACCATAGAAACAA
GGCCAGATTACTGCCTAAAGCGGCACATATCGGATATGCTTAGCTATGGT
TGCACCCGGCTGGAAATCGGTGTGCAATCGGTTTACGAAGACGTGGCCAG
GGATACGAACCGCGGACACACGGTGCGAGCGGTGTGCGAGAGCTTCCAGC
TGGGCAAGGATGCTGGCTATAAGATCGTGACGCACATGATGCCTGATCTT
CCCAATGTTGACTTTGAACGCGACATCGAGCAGTTTATCGAGTACTTTGA
GAACCCTGCCTTCCGCTCTGACGGCCTAAAGATCTATCCCACGCTCGTCA
TTCGCGGCACTGGTCTCTACGAGTTATGGAAAACCGGGCGATATAAGTCA
TATCCGCCATCCATGCTTGTGGACTTAGTGGCGAAGATTTTGGCCCTTGT
ACCACCATGGACGCGAGTGTACCGCGTACAGCGCGACATTCCCATGCCGC
TTGTTAGTTCCGGCGTGGAACACGGAAATCTCCGTGAACTGGCGCTGGCC
CGCATGAAGGATCTTGGAACCACTTGCCGCGATGTTAGAACCCGCGAAGT
TGGCATTCAGGAAATCCACAACAAGGTGCGCCCTTACGAAATTGAGCTAA
TTCGTCGGGACTATGTGGCCAATGGCGGCTGGGAAACGTTCCTCTCATAC
GAAGATCCTGAACAGGACATTCTCGTAGGCCTTCTTAGGCTGCGAAAGTG
CTCACCGGATACCTTCCGCCCGGAACTGAAGGGCGAATGCTCCATTGTGA
GGGAGCTGCACGTATATGGCTCAGTCGTGCCGGTTAATGCTAGGGATCCC
ACCAAGTTTCAGCACCAGGGCTTCGGTATGTTGCTGATGGAGGAGGCGGA
GCGAATTGCTCGAGAGGAGCACGGCAGCACAAAACTGGCGGTCATATCGG
GAGTGGGCACCAGAAACTACTATCGCAAAATGGGATACCAACTTGACGGA
CCCTACATGTCAAAGAGCATAGAAGAAAATAACTAGGTATAGCGTTAAAT
GACTGTCTTGGTGGTATGTTGGAGGATTAAATATTTGTATTTTATCACGC
TAGGAGCAGTAAGATTTCGCTACTTAAAACTACTCTCTTAAATATATACA
TTAATATATAGAAAAAAAAAAAAAAAA

RE35395.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:25:24
Subject Length Description Subject Range Query Range Score Percent Strand
Elp3-RA 1877 Elp3-RA 7..1869 1..1863 9315 100 Plus
Elp3.a 1867 Elp3.a 3..1867 1..1861 9240 99.7 Plus
CG15438-RA 1929 CG15438-RA 1824..1929 1863..1758 530 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 12:16:24
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 4444330..4445195 342..1207 4330 100 Plus
chr2L 23010047 chr2L 4445245..4445902 1204..1861 3275 99.8 Plus
chr2L 23010047 chr2L 4444031..4444273 99..341 1215 100 Plus
chr2L 23010047 chr2L 4443871..4443970 1..100 500 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:51:49 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 12:16:22
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4445193..4446058 342..1207 4330 100 Plus
2L 23513712 2L 4446108..4446767 1204..1863 3300 100 Plus
2L 23513712 2L 4444894..4445136 99..341 1215 100 Plus
2L 23513712 2L 4444734..4444833 1..100 500 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:54:27
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4445193..4446058 342..1207 4330 100 Plus
2L 23513712 2L 4446108..4446767 1204..1863 3300 100 Plus
2L 23513712 2L 4444894..4445136 99..341 1215 100 Plus
2L 23513712 2L 4444734..4444833 1..100 500 100 Plus
Blast to na_te.dros performed on 2019-03-16 12:16:23 has no hits.

RE35395.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 12:17:15 Download gff for RE35395.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 4443871..4443969 1..99 100 -> Plus
chr2L 4444032..4444273 100..341 100 -> Plus
chr2L 4444330..4445195 342..1207 100 -> Plus
chr2L 4445249..4445902 1208..1861 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:11:54 Download gff for RE35395.complete
Subject Subject Range Query Range Percent Splice Strand
Elp3-RA 1..1659 78..1736 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:38:09 Download gff for RE35395.complete
Subject Subject Range Query Range Percent Splice Strand
Elp3-RA 1..1659 78..1736 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 13:03:38 Download gff for RE35395.complete
Subject Subject Range Query Range Percent Splice Strand
Elp3-RA 1..1659 78..1736 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:08:42 Download gff for RE35395.complete
Subject Subject Range Query Range Percent Splice Strand
Elp3-RA 1..1659 78..1736 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:41:10 Download gff for RE35395.complete
Subject Subject Range Query Range Percent Splice Strand
Elp3-RA 1..1659 78..1736 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:03:16 Download gff for RE35395.complete
Subject Subject Range Query Range Percent Splice Strand
Elp3-RA 3..1863 1..1861 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:38:09 Download gff for RE35395.complete
Subject Subject Range Query Range Percent Splice Strand
Elp3-RA 3..1863 1..1861 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 13:03:38 Download gff for RE35395.complete
Subject Subject Range Query Range Percent Splice Strand
Elp3-RA 3..1863 1..1861 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:08:42 Download gff for RE35395.complete
Subject Subject Range Query Range Percent Splice Strand
Elp3-RA 3..1863 1..1861 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:41:10 Download gff for RE35395.complete
Subject Subject Range Query Range Percent Splice Strand
Elp3-RA 3..1863 1..1861 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:17:15 Download gff for RE35395.complete
Subject Subject Range Query Range Percent Splice Strand
2L 4444734..4444832 1..99 100 -> Plus
2L 4444895..4445136 100..341 100 -> Plus
2L 4445193..4446058 342..1207 100 -> Plus
2L 4446112..4446765 1208..1861 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:17:15 Download gff for RE35395.complete
Subject Subject Range Query Range Percent Splice Strand
2L 4444734..4444832 1..99 100 -> Plus
2L 4444895..4445136 100..341 100 -> Plus
2L 4445193..4446058 342..1207 100 -> Plus
2L 4446112..4446765 1208..1861 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:17:15 Download gff for RE35395.complete
Subject Subject Range Query Range Percent Splice Strand
2L 4444734..4444832 1..99 100 -> Plus
2L 4444895..4445136 100..341 100 -> Plus
2L 4445193..4446058 342..1207 100 -> Plus
2L 4446112..4446765 1208..1861 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:03:38 Download gff for RE35395.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 4444734..4444832 1..99 100 -> Plus
arm_2L 4444895..4445136 100..341 100 -> Plus
arm_2L 4445193..4446058 342..1207 100 -> Plus
arm_2L 4446112..4446765 1208..1861 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:42:48 Download gff for RE35395.complete
Subject Subject Range Query Range Percent Splice Strand
2L 4444895..4445136 100..341 100 -> Plus
2L 4445193..4446058 342..1207 100 -> Plus
2L 4446112..4446765 1208..1861 100   Plus
2L 4444734..4444832 1..99 100 -> Plus

RE35395.hyp Sequence

Translation from 2 to 1735

> RE35395.hyp
WSVDNRIKTSAANFTRAVYVIFISKMKAKKKLGVGLSRQERQVLVIGEII
QELLKAHEAKKDVNLNRMKSLVASKYGLDSSPRLVDIIAAVPQDAKKILL
PKLRAKPIRTASGIAVVAVMCKPHRCPHINMTGNICVYCPGGPDSDFEYS
TQSYTGYEPTSMRAIRSRYDPFLQTRHRVEQLKQLGHSVDKVEFIVMGGT
FMCLPEEYRDYFIRNLHDALSGHSSANVAEAVRYSEKSRTKCIGITIETR
PDYCLKRHISDMLSYGCTRLEIGVQSVYEDVARDTNRGHTVRAVCESFQL
GKDAGYKIVTHMMPDLPNVDFERDIEQFIEYFENPAFRSDGLKIYPTLVI
RGTGLYELWKTGRYKSYPPSMLVDLVAKILALVPPWTRVYRVQRDIPMPL
VSSGVEHGNLRELALARMKDLGTTCRDVRTREVGIQEIHNKVRPYEIELI
RRDYVANGGWETFLSYEDPEQDILVGLLRLRKCSPDTFRPELKGECSIVR
ELHVYGSVVPVNARDPTKFQHQGFGMLLMEEAERIAREEHGSTKLAVISG
VGTRNYYRKMGYQLDGPYMSKSIEENN*

RE35395.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:16:09
Subject Length Description Subject Range Query Range Score Percent Strand
Elp3-PA 552 CG15433-PA 1..552 26..577 2892 100 Plus

RE35395.pep Sequence

Translation from 77 to 1735

> RE35395.pep
MKAKKKLGVGLSRQERQVLVIGEIIQELLKAHEAKKDVNLNRMKSLVASK
YGLDSSPRLVDIIAAVPQDAKKILLPKLRAKPIRTASGIAVVAVMCKPHR
CPHINMTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRSRYDPFLQT
RHRVEQLKQLGHSVDKVEFIVMGGTFMCLPEEYRDYFIRNLHDALSGHSS
ANVAEAVRYSEKSRTKCIGITIETRPDYCLKRHISDMLSYGCTRLEIGVQ
SVYEDVARDTNRGHTVRAVCESFQLGKDAGYKIVTHMMPDLPNVDFERDI
EQFIEYFENPAFRSDGLKIYPTLVIRGTGLYELWKTGRYKSYPPSMLVDL
VAKILALVPPWTRVYRVQRDIPMPLVSSGVEHGNLRELALARMKDLGTTC
RDVRTREVGIQEIHNKVRPYEIELIRRDYVANGGWETFLSYEDPEQDILV
GLLRLRKCSPDTFRPELKGECSIVRELHVYGSVVPVNARDPTKFQHQGFG
MLLMEEAERIAREEHGSTKLAVISGVGTRNYYRKMGYQLDGPYMSKSIEE
NN*

RE35395.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 00:02:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21222-PA 672 GF21222-PA 1..526 1..526 2765 97.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 00:02:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG25004-PA 552 GG25004-PA 1..551 1..551 2927 98.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 00:02:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10129-PA 561 GH10129-PA 1..548 1..548 2776 95.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:31:46
Subject Length Description Subject Range Query Range Score Percent Strand
Elp3-PA 552 CG15433-PA 1..552 1..552 2892 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 00:02:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22150-PA 563 GI22150-PA 1..550 1..550 2780 93.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 00:02:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15175-PA 550 GL15175-PA 1..550 1..550 2852 96 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 00:02:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13723-PA 550 GA13723-PA 1..550 1..550 2848 95.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 00:02:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18474-PA 552 GM18474-PA 1..552 1..552 2947 99.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 00:02:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23288-PA 552 GD23288-PA 1..552 1..552 2957 99.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 00:02:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20018-PA 556 GJ20018-PA 1..551 1..551 2786 95.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 00:02:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24679-PA 550 GK24679-PA 1..549 1..548 2776 95.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 00:02:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18291-PA 554 GE18291-PA 1..552 1..552 2941 99.1 Plus