BDGP Sequence Production Resources |
Search the DGRC for RE35395
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 353 |
Well: | 95 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Elp3-RA |
Protein status: | RE35395.pep: gold |
Sequenced Size: | 1877 |
Gene | Date | Evidence |
---|---|---|
CG15433 | 2002-01-01 | Sim4 clustering to Release 2 |
CG15433 | 2002-02-22 | Blastp of sequenced clone |
CG15433 | 2003-01-01 | Sim4 clustering to Release 3 |
Elp3 | 2008-04-29 | Release 5.5 accounting |
Elp3 | 2008-08-15 | Release 5.9 accounting |
Elp3 | 2008-12-18 | 5.12 accounting |
1877 bp (1877 high quality bases) assembled on 2002-02-22
GenBank Submission: AY089621
> RE35395.complete ATTGGTCGGTCGATAACCGAATCAAAACAAGTGCTGCTAACTTCACACGT GCAGTTTATGTGATATTCATCAGCAAAATGAAGGCAAAAAAGAAGTTGGG CGTGGGATTGAGCCGCCAGGAACGACAGGTGCTCGTCATCGGGGAGATCA TTCAGGAGCTGCTGAAGGCGCACGAAGCCAAAAAGGATGTAAACCTTAAT CGGATGAAATCATTGGTGGCCTCCAAATATGGACTGGACAGTTCGCCGCG CCTGGTCGACATAATTGCTGCCGTGCCGCAGGACGCCAAAAAAATTCTGC TTCCAAAGCTGAGGGCAAAGCCCATTCGCACAGCAAGTGGCATCGCCGTG GTCGCCGTCATGTGCAAGCCGCATCGTTGTCCGCACATCAATATGACCGG CAATATATGCGTCTATTGTCCCGGCGGACCGGACAGCGACTTTGAGTACT CGACACAGTCGTACACAGGCTACGAGCCGACCTCGATGCGAGCCATCCGG TCGCGGTACGATCCTTTTCTTCAGACCCGACACCGCGTTGAACAGCTGAA GCAGCTGGGACACAGTGTGGACAAGGTGGAGTTCATCGTAATGGGCGGTA CGTTCATGTGCCTGCCGGAGGAGTACCGCGACTACTTTATCCGCAACCTA CACGACGCCCTCTCCGGCCACAGCAGCGCCAATGTGGCGGAAGCCGTACG CTACTCGGAGAAGTCACGCACAAAGTGCATTGGCATCACCATAGAAACAA GGCCAGATTACTGCCTAAAGCGGCACATATCGGATATGCTTAGCTATGGT TGCACCCGGCTGGAAATCGGTGTGCAATCGGTTTACGAAGACGTGGCCAG GGATACGAACCGCGGACACACGGTGCGAGCGGTGTGCGAGAGCTTCCAGC TGGGCAAGGATGCTGGCTATAAGATCGTGACGCACATGATGCCTGATCTT CCCAATGTTGACTTTGAACGCGACATCGAGCAGTTTATCGAGTACTTTGA GAACCCTGCCTTCCGCTCTGACGGCCTAAAGATCTATCCCACGCTCGTCA TTCGCGGCACTGGTCTCTACGAGTTATGGAAAACCGGGCGATATAAGTCA TATCCGCCATCCATGCTTGTGGACTTAGTGGCGAAGATTTTGGCCCTTGT ACCACCATGGACGCGAGTGTACCGCGTACAGCGCGACATTCCCATGCCGC TTGTTAGTTCCGGCGTGGAACACGGAAATCTCCGTGAACTGGCGCTGGCC CGCATGAAGGATCTTGGAACCACTTGCCGCGATGTTAGAACCCGCGAAGT TGGCATTCAGGAAATCCACAACAAGGTGCGCCCTTACGAAATTGAGCTAA TTCGTCGGGACTATGTGGCCAATGGCGGCTGGGAAACGTTCCTCTCATAC GAAGATCCTGAACAGGACATTCTCGTAGGCCTTCTTAGGCTGCGAAAGTG CTCACCGGATACCTTCCGCCCGGAACTGAAGGGCGAATGCTCCATTGTGA GGGAGCTGCACGTATATGGCTCAGTCGTGCCGGTTAATGCTAGGGATCCC ACCAAGTTTCAGCACCAGGGCTTCGGTATGTTGCTGATGGAGGAGGCGGA GCGAATTGCTCGAGAGGAGCACGGCAGCACAAAACTGGCGGTCATATCGG GAGTGGGCACCAGAAACTACTATCGCAAAATGGGATACCAACTTGACGGA CCCTACATGTCAAAGAGCATAGAAGAAAATAACTAGGTATAGCGTTAAAT GACTGTCTTGGTGGTATGTTGGAGGATTAAATATTTGTATTTTATCACGC TAGGAGCAGTAAGATTTCGCTACTTAAAACTACTCTCTTAAATATATACA TTAATATATAGAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2L | 23010047 | chr2L | 4444330..4445195 | 342..1207 | 4330 | 100 | Plus |
chr2L | 23010047 | chr2L | 4445245..4445902 | 1204..1861 | 3275 | 99.8 | Plus |
chr2L | 23010047 | chr2L | 4444031..4444273 | 99..341 | 1215 | 100 | Plus |
chr2L | 23010047 | chr2L | 4443871..4443970 | 1..100 | 500 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 4445193..4446058 | 342..1207 | 4330 | 100 | Plus |
2L | 23513712 | 2L | 4446108..4446767 | 1204..1863 | 3300 | 100 | Plus |
2L | 23513712 | 2L | 4444894..4445136 | 99..341 | 1215 | 100 | Plus |
2L | 23513712 | 2L | 4444734..4444833 | 1..100 | 500 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 4445193..4446058 | 342..1207 | 4330 | 100 | Plus |
2L | 23513712 | 2L | 4446108..4446767 | 1204..1863 | 3300 | 100 | Plus |
2L | 23513712 | 2L | 4444894..4445136 | 99..341 | 1215 | 100 | Plus |
2L | 23513712 | 2L | 4444734..4444833 | 1..100 | 500 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 4443871..4443969 | 1..99 | 100 | -> | Plus |
chr2L | 4444032..4444273 | 100..341 | 100 | -> | Plus |
chr2L | 4444330..4445195 | 342..1207 | 100 | -> | Plus |
chr2L | 4445249..4445902 | 1208..1861 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Elp3-RA | 1..1659 | 78..1736 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Elp3-RA | 1..1659 | 78..1736 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Elp3-RA | 1..1659 | 78..1736 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Elp3-RA | 1..1659 | 78..1736 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Elp3-RA | 1..1659 | 78..1736 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Elp3-RA | 3..1863 | 1..1861 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Elp3-RA | 3..1863 | 1..1861 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Elp3-RA | 3..1863 | 1..1861 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Elp3-RA | 3..1863 | 1..1861 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Elp3-RA | 3..1863 | 1..1861 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 4444734..4444832 | 1..99 | 100 | -> | Plus |
2L | 4444895..4445136 | 100..341 | 100 | -> | Plus |
2L | 4445193..4446058 | 342..1207 | 100 | -> | Plus |
2L | 4446112..4446765 | 1208..1861 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 4444734..4444832 | 1..99 | 100 | -> | Plus |
2L | 4444895..4445136 | 100..341 | 100 | -> | Plus |
2L | 4445193..4446058 | 342..1207 | 100 | -> | Plus |
2L | 4446112..4446765 | 1208..1861 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 4444734..4444832 | 1..99 | 100 | -> | Plus |
2L | 4444895..4445136 | 100..341 | 100 | -> | Plus |
2L | 4445193..4446058 | 342..1207 | 100 | -> | Plus |
2L | 4446112..4446765 | 1208..1861 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 4444734..4444832 | 1..99 | 100 | -> | Plus |
arm_2L | 4444895..4445136 | 100..341 | 100 | -> | Plus |
arm_2L | 4445193..4446058 | 342..1207 | 100 | -> | Plus |
arm_2L | 4446112..4446765 | 1208..1861 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 4444895..4445136 | 100..341 | 100 | -> | Plus |
2L | 4445193..4446058 | 342..1207 | 100 | -> | Plus |
2L | 4446112..4446765 | 1208..1861 | 100 | Plus | |
2L | 4444734..4444832 | 1..99 | 100 | -> | Plus |
Translation from 2 to 1735
> RE35395.hyp WSVDNRIKTSAANFTRAVYVIFISKMKAKKKLGVGLSRQERQVLVIGEII QELLKAHEAKKDVNLNRMKSLVASKYGLDSSPRLVDIIAAVPQDAKKILL PKLRAKPIRTASGIAVVAVMCKPHRCPHINMTGNICVYCPGGPDSDFEYS TQSYTGYEPTSMRAIRSRYDPFLQTRHRVEQLKQLGHSVDKVEFIVMGGT FMCLPEEYRDYFIRNLHDALSGHSSANVAEAVRYSEKSRTKCIGITIETR PDYCLKRHISDMLSYGCTRLEIGVQSVYEDVARDTNRGHTVRAVCESFQL GKDAGYKIVTHMMPDLPNVDFERDIEQFIEYFENPAFRSDGLKIYPTLVI RGTGLYELWKTGRYKSYPPSMLVDLVAKILALVPPWTRVYRVQRDIPMPL VSSGVEHGNLRELALARMKDLGTTCRDVRTREVGIQEIHNKVRPYEIELI RRDYVANGGWETFLSYEDPEQDILVGLLRLRKCSPDTFRPELKGECSIVR ELHVYGSVVPVNARDPTKFQHQGFGMLLMEEAERIAREEHGSTKLAVISG VGTRNYYRKMGYQLDGPYMSKSIEENN*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Elp3-PA | 552 | CG15433-PA | 1..552 | 26..577 | 2892 | 100 | Plus |
Translation from 77 to 1735
> RE35395.pep MKAKKKLGVGLSRQERQVLVIGEIIQELLKAHEAKKDVNLNRMKSLVASK YGLDSSPRLVDIIAAVPQDAKKILLPKLRAKPIRTASGIAVVAVMCKPHR CPHINMTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRSRYDPFLQT RHRVEQLKQLGHSVDKVEFIVMGGTFMCLPEEYRDYFIRNLHDALSGHSS ANVAEAVRYSEKSRTKCIGITIETRPDYCLKRHISDMLSYGCTRLEIGVQ SVYEDVARDTNRGHTVRAVCESFQLGKDAGYKIVTHMMPDLPNVDFERDI EQFIEYFENPAFRSDGLKIYPTLVIRGTGLYELWKTGRYKSYPPSMLVDL VAKILALVPPWTRVYRVQRDIPMPLVSSGVEHGNLRELALARMKDLGTTC RDVRTREVGIQEIHNKVRPYEIELIRRDYVANGGWETFLSYEDPEQDILV GLLRLRKCSPDTFRPELKGECSIVRELHVYGSVVPVNARDPTKFQHQGFG MLLMEEAERIAREEHGSTKLAVISGVGTRNYYRKMGYQLDGPYMSKSIEE NN*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF21222-PA | 672 | GF21222-PA | 1..526 | 1..526 | 2765 | 97.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG25004-PA | 552 | GG25004-PA | 1..551 | 1..551 | 2927 | 98.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH10129-PA | 561 | GH10129-PA | 1..548 | 1..548 | 2776 | 95.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Elp3-PA | 552 | CG15433-PA | 1..552 | 1..552 | 2892 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI22150-PA | 563 | GI22150-PA | 1..550 | 1..550 | 2780 | 93.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL15175-PA | 550 | GL15175-PA | 1..550 | 1..550 | 2852 | 96 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA13723-PA | 550 | GA13723-PA | 1..550 | 1..550 | 2848 | 95.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM18474-PA | 552 | GM18474-PA | 1..552 | 1..552 | 2947 | 99.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD23288-PA | 552 | GD23288-PA | 1..552 | 1..552 | 2957 | 99.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ20018-PA | 556 | GJ20018-PA | 1..551 | 1..551 | 2786 | 95.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK24679-PA | 550 | GK24679-PA | 1..549 | 1..548 | 2776 | 95.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE18291-PA | 554 | GE18291-PA | 1..552 | 1..552 | 2941 | 99.1 | Plus |