Clone RE35406 Report

Search the DGRC for RE35406

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:354
Well:6
Vector:pFlc-1
Associated Gene/Transcriptlt-RC
Protein status:RE35406.pep: gold
Preliminary Size:2922
Sequenced Size:2792

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG18028 2002-01-01 Sim4 clustering to Release 2
CG18028 2002-05-20 Blastp of sequenced clone
lt 2008-04-29 Release 5.5 accounting
lt 2008-08-15 Release 5.9 accounting
lt 2008-12-18 5.12 accounting

Clone Sequence Records

RE35406.complete Sequence

2792 bp (2792 high quality bases) assembled on 2002-05-20

GenBank Submission: AY118388

> RE35406.complete
ATAGTAATTATTATTGTCTATGGCGCTATTAGTAAATGTAAATAATAAAA
TAATACATCAGCTTGTGTATTTTCGTTGTTTGAAAATCAGAAATTTCCGT
TTGCTTTAAATGGCTAAAGCGTTGCCGCTCATCAGTTGTGACTCTTGGGC
CGATAGCATAAATGAGGAAGATGTGGAGCCCAAATTTAAGTATCACCGTC
TCGCAAATGATTTAAAATACATGCTCAACGCTGATGTCATCACTTGTAGC
GCTGTACACTTAAAGGTGTGAGCCAACCACATATTATATAAGTATTTTAA
AAAACGTACATATTTAGTTTCTTATATTTGGAACTTTCCGAGGACGTGTT
TGTATATTTGACCATCAAGGAAACTCAGTCTACTCAAATCTTAGCGCTAG
CGAACGTCACACTCACCAAGTGGCAGTAAACAATATAGATGTAGATCATA
AGGGCGAGTATGTGGCCACATGCTCCGACGACGGAAAAGTTAACATAACG
GGATTGTTTAGCTCTGATAACAATCACAGTCTCAGCTTTGGCAAATTTAT
AAAGGTCGTATCACTGGAGCCCGATTCCAAAGCTCACATTAAAAGATTTG
TAGTGGGCGACGACAAACTTATCTTGTACGAGCGAAACTTGCTAAAGAAG
CTTAAACCAGTTGAACTGTGCTCAGTCGAAGGCAGTGTTTTGTCAATCTG
CTGGCATGGCAACTTTATTGCCTGGGCAAGTCACATAGGAGTTCGAGTCT
ACGATTTAAACGAAAGATGCTCACTTGGATTAATAAAGTGGGAGGTTCCT
CCTCAGGAGCGATTAGAAAATTTTCGATGCCACCTTCGTTGGTCCAACAA
GCATACATTATTAATTGGCTGGGTAGACACTATTCGAGTTTGCGTAATTC
GAAAGAGAAATTCAATCGAAGCTTCAACTGGCAATCTGCCTGTCTACATT
GTGGATCCAATCTCGACATTTCAAACAACTTTCTACGTATGTGGGCTTGC
ACCATTATCTGCAAAGCAATTGGTTGTTCTTGGCTTTCGCAAGGAAAAAA
GCTCTTGTTTTAAAGCCCTACGACCTGTATTATGCGTTATTGAATACAAA
ATGAATAATAGCGAGGAAATCTGCACAGACAGTTTAACTTTACGCGGCTT
TGAGGAGTACACCGTGAATGACTATAGTCTGGGTGGCATAATCGAGGAGA
ATCGCTTTTATATTGTGGCCCCAAAGGATATTGTGGTAGCTAGTCTTATT
GAAACAGATGATCGTATAGAATGGTTGATTAAACACAGTAAATTTGAGGA
GGCAATGGAACTTATATCTGCGAATGGAGGTAACGTTCCCGTACTTTCCG
TTGCTAAACTTTATATCAACCATTTACTGGCGCTTAAGAAGTATGATGAC
GCAGCAAAACTTTGCCTCCGCATGCTAGGCAATGACAAAGTCCTTTGGGA
AGAGGAAGTTTTTAAGTTTGTAAAGTGTCAGCAGCTACGATCAGTTAGCG
CCTATCTGCCGACTTCAGACGAATGCAAACTTGATCCCCATGTATACGAA
ATGGTTTTATACGAGTTTCTCAAATTTGATGTATGTGGTTTCCTGAATCT
TATCAAGGAATGGCCATCTCATCTTTATGACGGCCTGGCTGTTATTAACG
CTATTCACGATAACTTTCGAAAGCACTATGCCAATCAGTTGCTGGAATCA
TTGGCTCTTTTGTATTCCTATCAAGGCGACTTCGAAAGTGCTCTTCGCAT
GTATTTAAAGTTGCAGAACAAGGATGTCTTCCAATTAATTCGACGGTATG
AGCTTTACGATGTCATTTCAAAACTGATTATTCCACTTATTCAATTGGAT
CGTGACTGCGCCTTTGAAATACTACTTGACAAGAAAAAAATAAAGACTGA
GATAGTTGTCCACCAGCTAGAGCACAATCAAGAGTACCTGTACTGGTACT
TAGATTCTTTACTTAAAAAGGATCCCAGTAATGTGTTTCAAAAAAAACTT
ATCTCCTTATATGCCATTTTCGATCGAAACAAACTATTGCCCTTTCTAAA
GCGTTCAAAGGACTATGACATTCAGGAGGCGTTGGTCATATGCAAACAGG
AAAACTTTTATCCAGAAATAGTCTACCTGCTCGGGTGTATGGGTGGCGTA
GAAGCGTCCGAAGCACTTAATATTATTATTCATCGCATCAGAGACATAGA
AATGGCCATAGAGTTTTGCAAGGAGCACGATGACAGCGATCTTTGGAATG
CACTTATAAATGAATTTAGCAAGCACCCTGAAATTGTGACCAAAGTTTTG
GACGGCATAGTTGACTACTTTAGCCCAGCGGTGGTTGTTGGAAAGATCAA
AATGGGACAGAACATTCCAAATCTTCGACAATCACTTATAAAAATGCTGC
GCCACTACAATCTTCAAGGTGAAATTTTATCCTCCGCCCAACAAATTCAA
CTTAATGACTATTTTGAAATTCACTCGGAGATAGTCACCACGCAAAGACG
AGGTCAGCAGGTTTCCTACGAACAACTATGCTCATTGTGCCACCGTCCAG
TACTGATGGCAGGCACACACTTGTATTGTATAATCAGGTTAGAGTGTGGT
CATGTATACCATAAACCGTGCATACAAGGTGAATTGCTTAAAAATTGCAA
CGAGTGTAACCTTTGGAAGTTAACCGTGGGGAAATAGGTTTATAGCGACA
TCATAACTGTTACCCCGGCGTCCTGTTAGGGGAATTAAGAATAAATAAAC
TTTATAGCTTAATTTCTTAAAAAAAAAAAAAAAAAAAAAAAA

RE35406.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:59:09
Subject Length Description Subject Range Query Range Score Percent Strand
lt-RC 3067 lt-RC 1..2769 1..2769 13845 100 Plus
lt.k 3388 lt.k 1..2769 1..2769 13845 100 Plus
lt.l 4579 lt.l 340..2793 316..2769 12270 100 Plus
lt.l 4579 lt.l 77..341 1..265 1325 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:43:32
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 22831320..22831775 2313..2768 2280 100 Plus
chr2L 23010047 chr2L 22830152..22830555 1358..1761 2020 100 Plus
chr2L 23010047 chr2L 22816797..22817151 606..960 1775 100 Plus
chr2L 23010047 chr2L 22816214..22816564 140..490 1755 100 Plus
chr2L 23010047 chr2L 22818670..22818997 961..1288 1640 100 Plus
chr2L 23010047 chr2L 22830842..22831082 1946..2186 1205 100 Plus
chr2L 23010047 chr2L 22830602..22830788 1760..1946 935 100 Plus
chr2L 23010047 chr2L 22816019..22816158 1..140 700 100 Plus
chr2L 23010047 chr2L 22831135..22831261 2187..2313 635 100 Plus
chr2L 23010047 chr2L 22816613..22816731 489..607 595 100 Plus
chr2L 23010047 chr2L 22830020..22830090 1287..1357 355 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:51:50 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:43:30
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 22940072..22940528 2313..2769 2285 100 Plus
2L 23513712 2L 22938904..22939307 1358..1761 2020 100 Plus
2L 23513712 2L 22925565..22925919 606..960 1775 100 Plus
2L 23513712 2L 22924982..22925332 140..490 1755 100 Plus
2L 23513712 2L 22927438..22927765 961..1288 1640 100 Plus
2L 23513712 2L 22939594..22939834 1946..2186 1205 100 Plus
2L 23513712 2L 22939354..22939540 1760..1946 935 100 Plus
2L 23513712 2L 22924787..22924926 1..140 700 100 Plus
2L 23513712 2L 22939887..22940013 2187..2313 635 100 Plus
2L 23513712 2L 22925381..22925499 489..607 595 100 Plus
2L 23513712 2L 22938772..22938842 1287..1357 355 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:31:13
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 22940072..22940528 2313..2769 2285 100 Plus
2L 23513712 2L 22938904..22939307 1358..1761 2020 100 Plus
2L 23513712 2L 22925565..22925919 606..960 1775 100 Plus
2L 23513712 2L 22924982..22925332 140..490 1755 100 Plus
2L 23513712 2L 22927438..22927765 961..1288 1640 100 Plus
2L 23513712 2L 22939594..22939834 1946..2186 1205 100 Plus
2L 23513712 2L 22939354..22939540 1760..1946 935 100 Plus
2L 23513712 2L 22924787..22924926 1..140 700 100 Plus
2L 23513712 2L 22939887..22940013 2187..2313 635 100 Plus
2L 23513712 2L 22925381..22925499 489..607 595 100 Plus
2L 23513712 2L 22938772..22938842 1287..1357 355 100 Plus
Blast to na_te.dros performed on 2019-03-15 22:43:30 has no hits.

RE35406.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:44:44 Download gff for RE35406.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 22816019..22816157 1..139 100 -> Plus
chr2L 22816214..22816562 140..488 100 -> Plus
chr2L 22816613..22816730 489..606 100 -> Plus
chr2L 22816798..22817151 607..960 100 -> Plus
chr2L 22818670..22818997 961..1288 100 -> Plus
chr2L 22830022..22830090 1289..1357 100 -> Plus
chr2L 22830152..22830553 1358..1759 100 -> Plus
chr2L 22830602..22830788 1760..1946 100 -> Plus
chr2L 22830843..22831082 1947..2186 100 -> Plus
chr2L 22831135..22831261 2187..2313 100 -> Plus
chr2L 22831321..22831775 2314..2768 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:50:55 Download gff for RE35406.complete
Subject Subject Range Query Range Percent Splice Strand
lt-RB 44..2415 316..2687 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:38:46 Download gff for RE35406.complete
Subject Subject Range Query Range Percent Splice Strand
lt-RB 44..2415 316..2687 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:30:48 Download gff for RE35406.complete
Subject Subject Range Query Range Percent Splice Strand
lt-RB 44..2415 316..2687 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:30:29 Download gff for RE35406.complete
Subject Subject Range Query Range Percent Splice Strand
lt-RB 44..2415 316..2687 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:33:18 Download gff for RE35406.complete
Subject Subject Range Query Range Percent Splice Strand
lt-RA 1..154 110..263 100 == Plus
lt-RA 155..2526 316..2687 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:50:55 Download gff for RE35406.complete
Subject Subject Range Query Range Percent Splice Strand
lt-RC 1..2768 1..2768 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:38:45 Download gff for RE35406.complete
Subject Subject Range Query Range Percent Splice Strand
lt-RC 1..2768 1..2768 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:30:48 Download gff for RE35406.complete
Subject Subject Range Query Range Percent Splice Strand
lt-RC 1..2760 9..2768 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:30:29 Download gff for RE35406.complete
Subject Subject Range Query Range Percent Splice Strand
lt-RC 1..2768 1..2768 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:33:18 Download gff for RE35406.complete
Subject Subject Range Query Range Percent Splice Strand
lt-RC 1..2760 9..2768 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:44:44 Download gff for RE35406.complete
Subject Subject Range Query Range Percent Splice Strand
2L 22927438..22927765 961..1288 100 -> Plus
2L 22938774..22938842 1289..1357 100 -> Plus
2L 22939354..22939540 1760..1946 100 -> Plus
2L 22924787..22924925 1..139 100 -> Plus
2L 22924982..22925330 140..488 100 -> Plus
2L 22925381..22925498 489..606 100 -> Plus
2L 22925566..22925919 607..960 100 -> Plus
2L 22938904..22939305 1358..1759 100 -> Plus
2L 22939595..22939834 1947..2186 100 -> Plus
2L 22939887..22940013 2187..2313 100 -> Plus
2L 22940073..22940527 2314..2768 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:44:44 Download gff for RE35406.complete
Subject Subject Range Query Range Percent Splice Strand
2L 22927438..22927765 961..1288 100 -> Plus
2L 22938774..22938842 1289..1357 100 -> Plus
2L 22939354..22939540 1760..1946 100 -> Plus
2L 22924787..22924925 1..139 100 -> Plus
2L 22924982..22925330 140..488 100 -> Plus
2L 22925381..22925498 489..606 100 -> Plus
2L 22925566..22925919 607..960 100 -> Plus
2L 22938904..22939305 1358..1759 100 -> Plus
2L 22939595..22939834 1947..2186 100 -> Plus
2L 22939887..22940013 2187..2313 100 -> Plus
2L 22940073..22940527 2314..2768 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:44:44 Download gff for RE35406.complete
Subject Subject Range Query Range Percent Splice Strand
2L 22927438..22927765 961..1288 100 -> Plus
2L 22938774..22938842 1289..1357 100 -> Plus
2L 22939354..22939540 1760..1946 100 -> Plus
2L 22924787..22924925 1..139 100 -> Plus
2L 22924982..22925330 140..488 100 -> Plus
2L 22925381..22925498 489..606 100 -> Plus
2L 22925566..22925919 607..960 100 -> Plus
2L 22938904..22939305 1358..1759 100 -> Plus
2L 22939595..22939834 1947..2186 100 -> Plus
2L 22939887..22940013 2187..2313 100 -> Plus
2L 22940073..22940527 2314..2768 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:30:48 Download gff for RE35406.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 22832086..22832272 1760..1946 100 -> Plus
arm_2L 22817519..22817657 1..139 100 -> Plus
arm_2L 22817714..22818062 140..488 100 -> Plus
arm_2L 22818113..22818230 489..606 100 -> Plus
arm_2L 22818298..22818651 607..960 100 -> Plus
arm_2L 22820170..22820497 961..1288 100 -> Plus
arm_2L 22831506..22831574 1289..1357 100 -> Plus
arm_2L 22831636..22832037 1358..1759 100 -> Plus
arm_2L 22832327..22832566 1947..2186 100 -> Plus
arm_2L 22832619..22832745 2187..2313 100 -> Plus
arm_2L 22832805..22833259 2314..2768 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:03:04 Download gff for RE35406.complete
Subject Subject Range Query Range Percent Splice Strand
2L 22940073..22940527 2314..2768 100   Plus
2L 22924982..22925330 140..488 100 -> Plus
2L 22925381..22925498 489..606 100 -> Plus
2L 22925566..22925919 607..960 100 -> Plus
2L 22927438..22927765 961..1288 100 -> Plus
2L 22938774..22938842 1289..1357 100 -> Plus
2L 22938904..22939305 1358..1759 100 -> Plus
2L 22939354..22939540 1760..1946 100 -> Plus
2L 22939595..22939834 1947..2186 100 -> Plus
2L 22939887..22940013 2187..2313 100 -> Plus
2L 22924787..22924925 1..139 100 -> Plus

RE35406.pep Sequence

Translation from 1100 to 2686

> RE35406.pep
MNNSEEICTDSLTLRGFEEYTVNDYSLGGIIEENRFYIVAPKDIVVASLI
ETDDRIEWLIKHSKFEEAMELISANGGNVPVLSVAKLYINHLLALKKYDD
AAKLCLRMLGNDKVLWEEEVFKFVKCQQLRSVSAYLPTSDECKLDPHVYE
MVLYEFLKFDVCGFLNLIKEWPSHLYDGLAVINAIHDNFRKHYANQLLES
LALLYSYQGDFESALRMYLKLQNKDVFQLIRRYELYDVISKLIIPLIQLD
RDCAFEILLDKKKIKTEIVVHQLEHNQEYLYWYLDSLLKKDPSNVFQKKL
ISLYAIFDRNKLLPFLKRSKDYDIQEALVICKQENFYPEIVYLLGCMGGV
EASEALNIIIHRIRDIEMAIEFCKEHDDSDLWNALINEFSKHPEIVTKVL
DGIVDYFSPAVVVGKIKMGQNIPNLRQSLIKMLRHYNLQGEILSSAQQIQ
LNDYFEIHSEIVTTQRRGQQVSYEQLCSLCHRPVLMAGTHLYCIIRLECG
HVYHKPCIQGELLKNCNECNLWKLTVGK*

RE35406.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 03:55:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22734-PA 839 GF22734-PA 314..831 1..521 1717 63.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 03:55:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21404-PA 846 GG21404-PA 319..846 1..528 2603 93 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 03:55:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13627-PA 1045 GH13627-PA 519..1039 1..526 1920 69.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:34:37
Subject Length Description Subject Range Query Range Score Percent Strand
lt-PF 841 CG18028-PF 314..841 1..528 2771 100 Plus
lt-PE 841 CG18028-PE 314..841 1..528 2771 100 Plus
lt-PC 528 CG18028-PC 1..528 1..528 2771 100 Plus
lt-PA 841 CG18028-PA 314..841 1..528 2771 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 03:55:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11759-PA 835 GI11759-PA 311..827 1..522 1973 71.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 03:55:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21142-PA 848 GL21142-PA 317..839 1..521 2101 77.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 03:55:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA29085-PA 848 GA29085-PA 317..839 1..521 2104 77.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 03:55:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26693-PA 791 GM26693-PA 313..791 50..528 2364 93.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 03:55:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13125-PA 832 GJ13125-PA 311..824 1..522 1859 70.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 03:55:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24377-PA 848 GK24377-PA 316..839 1..524 2127 76.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 03:55:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14043-PA 843 GE14043-PA 314..841 1..528 2511 90 Plus

RE35406.hyp Sequence

Translation from 1100 to 2686

> RE35406.hyp
MNNSEEICTDSLTLRGFEEYTVNDYSLGGIIEENRFYIVAPKDIVVASLI
ETDDRIEWLIKHSKFEEAMELISANGGNVPVLSVAKLYINHLLALKKYDD
AAKLCLRMLGNDKVLWEEEVFKFVKCQQLRSVSAYLPTSDECKLDPHVYE
MVLYEFLKFDVCGFLNLIKEWPSHLYDGLAVINAIHDNFRKHYANQLLES
LALLYSYQGDFESALRMYLKLQNKDVFQLIRRYELYDVISKLIIPLIQLD
RDCAFEILLDKKKIKTEIVVHQLEHNQEYLYWYLDSLLKKDPSNVFQKKL
ISLYAIFDRNKLLPFLKRSKDYDIQEALVICKQENFYPEIVYLLGCMGGV
EASEALNIIIHRIRDIEMAIEFCKEHDDSDLWNALINEFSKHPEIVTKVL
DGIVDYFSPAVVVGKIKMGQNIPNLRQSLIKMLRHYNLQGEILSSAQQIQ
LNDYFEIHSEIVTTQRRGQQVSYEQLCSLCHRPVLMAGTHLYCIIRLECG
HVYHKPCIQGELLKNCNECNLWKLTVGK*

RE35406.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:52:50
Subject Length Description Subject Range Query Range Score Percent Strand
lt-PF 841 CG18028-PF 314..841 1..528 2771 100 Plus
lt-PE 841 CG18028-PE 314..841 1..528 2771 100 Plus
lt-PC 528 CG18028-PC 1..528 1..528 2771 100 Plus
lt-PA 841 CG18028-PA 314..841 1..528 2771 100 Plus