Clone RE35552 Report

Search the DGRC for RE35552

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:355
Well:52
Vector:pFlc-1
Associated Gene/TranscriptCG32581-RA
Protein status:RE35552.pep: gold
Sequenced Size:1447

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG32581-RA 2008-10-27 Manual selection by Ken Wan

Clone Sequence Records

RE35552.complete Sequence

1447 bp assembled on 2009-04-13

GenBank Submission: BT082041.1

> RE35552.complete
AGTGCAATTGTTTTGAGGTGCTAAGACGTCAATTGATTGACTTGTCCACA
CAATCAATTTAGCAACATTCTCTGATTCGGTTTAACAATACTTAGCACGG
CAAGTAGAAGCAAACAGTGAGCGAAAACAAACAATAAAATGAGGGCAAAC
AAGTCAGGTTTTGCAAACAATACACTTACAATCTTGAACGACTAAAACTT
TACCCGCATCTTGGGCAAACCATGGAGGAACCGAAAAGTGTATCCACAGC
GGAGCTTCCCAGCACATCAACCGGGGCATCGTCGTCCTCATCGACTTTGT
CCAACAACGTGAGCTACGACAAGATAGCCTGGACTCGGGATATCACAGAA
CCCTTGGCTGAGGAGTCATCTACAAGTCAATTGCGCCCGCTGGGTACCTC
GATTCCAACCAATTCGACGGCATCGGAACTGAAGAAGTCCAACACTTCGT
ATTCCTTTACTGGAGACTATCTATCTGGTGGCAATAAGGCCGATCTGAAG
GGTGGCTATCCATTCGGCGGCACCGATACGGACACAAAAGCCAACGAAAA
GGACAAGGAGAAGGAACATACCGCAGACGACTCACTCTACGAGTGCAACA
TATGCCTGGACACCGCCAAGGATGCTGTGGTCAGCATGTGCGGCCATCTG
TTCTGCTGGCCGTGCCTGCATCAGTGGCTCCTGACGCGTCCCAATCGCAA
ACTCTGTCCCGTTTGTAAGGCTGCCGTTGATAAGGATAAGGTCATACCGC
TGTACGGAAGAAATAGTACACACCAGGAAGATCCACGTAACAAAGTTCCA
CCACGCCCCGCTGGACAACGTACAGAACCAGATCCTGTTCCCGGGTTCCC
TGGATTCGGATTCGGCGACGGATTTCACATGTCTTTCGGTATTGGAGCTT
TTCCTTTCGGGTTCATAACATCTAGGCTCAACTTTTTCGAACCACGTCCA
CCTGCTGATATTAGAAGGCTACACGAAGATGAACCCTGGGCCCTGTCAAA
ACTGTTCTGGCATTTTGTCGTTTTTGTGATATATGGGCTGCTCGTTCCAA
TAGTGCACGGATCATCCCGATAAGAAGAACCTATATTCAAATGTCAATGG
AAAGCGTGCGAAGTAATCAAATAGCAGTATCCTCCAGTTAAATCAACAAT
ATTGTTAAACTCGTTGGGCTATAGTCGTTGGTGTGATTAATTAACATAAA
TTGTTAGCATTCGGTTATAATTGTAATTTGAGGATTCGCAAAACAGAAGT
GGATTGGGTCCCAAATTATTTCAAAAAGTCTGCAATACCCTACGACTTCA
GCATAAAAAACTGAAATTTCGAAATAATTGGATCGTAATGATTTAATTCA
AATGTAGATTTCAAAAATTGTATAAATTTATATTTTAAATTCTATAAAAC
ATTAAAAACATTTATTTTAAAAAAAAAAAAGAAAAAAAAAAAAAAAA

RE35552.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:30:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG32581-RA 1448 CG32581-RA 20..1439 1..1420 7100 100 Plus
CG32581-RB 1570 CG32581-RB 330..1567 183..1420 6190 100 Plus
CG8974-RA 1504 CG8974-RA 98..1015 40..957 4515 99.4 Plus
CG8974-RA 1504 CG8974-RA 1136..1492 1061..1417 1545 95.5 Plus
CG32581-RB 1570 CG32581-RB 231..329 1..99 495 100 Plus
CG8974-RA 1504 CG8974-RA 32..68 1..37 170 97.2 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 19:24:32
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 15687526..15688130 787..183 3025 100 Minus
chrX 22417052 chrX 15684356..15684960 787..183 3010 99.8 Minus
chrX 22417052 chrX 15686765..15687231 1420..954 2335 100 Minus
chrX 22417052 chrX 15683581..15683937 1417..1061 1545 95.5 Minus
chrX 22417052 chrX 15688830..15689011 182..1 895 99.5 Minus
chrX 22417052 chrX 15687296..15687463 954..787 840 100 Minus
chrX 22417052 chrX 15684126..15684293 954..787 795 98.2 Minus
chrX 22417052 chrX 15685669..15685811 182..40 700 99.3 Minus
chr3L 24539361 chr3L 15111737..15111915 586..764 310 78.2 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:51:53 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 19:24:30
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15797667..15798271 787..183 3025 100 Minus
X 23542271 X 15794497..15795101 787..183 3010 99.8 Minus
X 23542271 X 15796906..15797372 1420..954 2335 100 Minus
X 23542271 X 15793722..15794078 1417..1061 1545 95.5 Minus
X 23542271 X 15798971..15799152 182..1 910 100 Minus
X 23542271 X 15797437..15797604 954..787 840 100 Minus
X 23542271 X 15794267..15794434 954..787 795 98.2 Minus
X 23542271 X 15795810..15795952 182..40 700 99.3 Minus
3L 28110227 3L 15121665..15121843 586..764 310 78.2 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:46:56
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 15805765..15806369 787..183 3025 100 Minus
X 23527363 X 15802595..15803199 787..183 3010 99.8 Minus
X 23527363 X 15805004..15805470 1420..954 2335 100 Minus
X 23527363 X 15801820..15802176 1417..1061 1545 95.5 Minus
X 23527363 X 15807069..15807250 182..1 910 100 Minus
X 23527363 X 15805535..15805702 954..787 840 100 Minus
X 23527363 X 15802365..15802532 954..787 795 98.2 Minus
X 23527363 X 15803908..15804050 182..40 700 99.3 Minus
3L 28103327 3L 15114765..15114943 586..764 310 78.2 Plus
X 23527363 X 15804080..15804116 37..1 170 97.2 Minus
Blast to na_te.dros performed 2019-03-16 19:24:31
Subject Length Description Subject Range Query Range Score Percent Strand
HeT-A 6083 HeT-A DM06920 6083bp Derived from U06920.2 (Rel. 67, Last updated, Version 14). 4010..4123 124..233 127 60.5 Plus

RE35552.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 19:25:45 Download gff for RE35552.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 15686767..15687230 955..1418 100 <- Minus
chrX 15687296..15687462 788..954 100 <- Minus
chrX 15687526..15688130 183..787 100 <- Minus
chrX 15688830..15689011 1..182 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 17:49:24 Download gff for RE35552.complete
Subject Subject Range Query Range Percent Splice Strand
CG32581-RB 1..852 222..1073 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:45:26 Download gff for RE35552.complete
Subject Subject Range Query Range Percent Splice Strand
CG32581-RB 1..852 222..1073 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:38:56 Download gff for RE35552.complete
Subject Subject Range Query Range Percent Splice Strand
CG32581-RA 1..852 222..1073 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:30:17 Download gff for RE35552.complete
Subject Subject Range Query Range Percent Splice Strand
CG32581-RA 1..852 222..1073 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-04-13 09:25:11 Download gff for RE35552.complete
Subject Subject Range Query Range Percent Splice Strand
CG32581-RA 5..1422 1..1418 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:45:26 Download gff for RE35552.complete
Subject Subject Range Query Range Percent Splice Strand
CG32581-RA 5..1422 1..1418 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:38:56 Download gff for RE35552.complete
Subject Subject Range Query Range Percent Splice Strand
CG32581-RA 11..1428 1..1418 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:30:17 Download gff for RE35552.complete
Subject Subject Range Query Range Percent Splice Strand
CG32581-RA 11..1428 1..1418 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:25:45 Download gff for RE35552.complete
Subject Subject Range Query Range Percent Splice Strand
X 15797437..15797603 788..954 100 <- Minus
X 15796908..15797371 955..1418 100 <- Minus
X 15797667..15798271 183..787 100 <- Minus
X 15798971..15799152 1..182 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:25:45 Download gff for RE35552.complete
Subject Subject Range Query Range Percent Splice Strand
X 15797437..15797603 788..954 100 <- Minus
X 15796908..15797371 955..1418 100 <- Minus
X 15797667..15798271 183..787 100 <- Minus
X 15798971..15799152 1..182 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:25:45 Download gff for RE35552.complete
Subject Subject Range Query Range Percent Splice Strand
X 15797437..15797603 788..954 100 <- Minus
X 15796908..15797371 955..1418 100 <- Minus
X 15797667..15798271 183..787 100 <- Minus
X 15798971..15799152 1..182 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:38:56 Download gff for RE35552.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 15690941..15691404 955..1418 100 <- Minus
arm_X 15691470..15691636 788..954 100 <- Minus
arm_X 15691700..15692304 183..787 100 <- Minus
arm_X 15693004..15693185 1..182 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:20:43 Download gff for RE35552.complete
Subject Subject Range Query Range Percent Splice Strand
X 15805006..15805469 955..1418 100 <- Minus
X 15805535..15805701 788..954 100 <- Minus
X 15805765..15806369 183..787 100 <- Minus
X 15807069..15807250 1..182 100   Minus

RE35552.hyp Sequence

Translation from 221 to 1072

> RE35552.hyp
MEEPKSVSTAELPSTSTGASSSSSTLSNNVSYDKIAWTRDITEPLAEESS
TSQLRPLGTSIPTNSTASELKKSNTSYSFTGDYLSGGNKADLKGGYPFGG
TDTDTKANEKDKEKEHTADDSLYECNICLDTAKDAVVSMCGHLFCWPCLH
QWLLTRPNRKLCPVCKAAVDKDKVIPLYGRNSTHQEDPRNKVPPRPAGQR
TEPDPVPGFPGFGFGDGFHMSFGIGAFPFGFITSRLNFFEPRPPADIRRL
HEDEPWALSKLFWHFVVFVIYGLLVPIVHGSSR*

RE35552.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:00:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG32581-PB 283 CG32581-PB 1..283 1..283 1535 100 Plus
CG32581-PA 283 CG32581-PA 1..283 1..283 1535 100 Plus
CG8974-PE 277 CG8974-PE 1..274 1..273 1330 92.7 Plus
CG8974-PD 277 CG8974-PD 1..274 1..273 1330 92.7 Plus
CG8974-PB 277 CG8974-PB 1..274 1..273 1330 92.7 Plus

RE35552.pep Sequence

Translation from 221 to 1072

> RE35552.pep
MEEPKSVSTAELPSTSTGASSSSSTLSNNVSYDKIAWTRDITEPLAEESS
TSQLRPLGTSIPTNSTASELKKSNTSYSFTGDYLSGGNKADLKGGYPFGG
TDTDTKANEKDKEKEHTADDSLYECNICLDTAKDAVVSMCGHLFCWPCLH
QWLLTRPNRKLCPVCKAAVDKDKVIPLYGRNSTHQEDPRNKVPPRPAGQR
TEPDPVPGFPGFGFGDGFHMSFGIGAFPFGFITSRLNFFEPRPPADIRRL
HEDEPWALSKLFWHFVVFVIYGLLVPIVHGSSR*

RE35552.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 16:28:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19745-PA 252 GF19745-PA 1..250 1..274 486 45.6 Plus
Dana\GF19854-PA 189 GF19854-PA 1..186 1..192 431 46.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 16:28:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19371-PA 277 GG19371-PA 1..275 1..274 1061 83.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 16:28:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12208-PA 273 GH12208-PA 19..271 11..274 772 59.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:01:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG32581-PB 283 CG32581-PB 1..283 1..283 1535 100 Plus
CG32581-PA 283 CG32581-PA 1..283 1..283 1535 100 Plus
CG8974-PE 277 CG8974-PE 1..274 1..273 1330 92.7 Plus
CG8974-PD 277 CG8974-PD 1..274 1..273 1330 92.7 Plus
CG8974-PB 277 CG8974-PB 1..274 1..273 1330 92.7 Plus
CG8974-PA 277 CG8974-PA 1..274 1..273 1330 92.7 Plus
CG8974-PC 277 CG8974-PC 1..274 1..273 1330 92.7 Plus
CG32847-PB 164 CG32847-PB 10..163 117..275 389 47.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 16:28:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15740-PA 285 GI15740-PA 4..283 3..274 742 52.5 Plus
Dmoj\GI13710-PA 151 GI13710-PA 2..131 109..238 322 49.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 16:28:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22919-PA 280 GL22919-PA 1..278 1..274 658 58.4 Plus
Dper\GL14111-PA 280 GL14111-PA 1..278 1..274 658 58.4 Plus
Dper\GL14112-PA 251 GL14112-PA 11..249 48..274 641 67.4 Plus
Dper\GL22918-PA 241 GL22918-PA 1..239 1..274 637 58.6 Plus
Dper\GL12903-PA 221 GL12903-PA 20..219 71..274 420 44 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 16:28:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA28677-PA 242 GA28677-PA 1..231 1..228 605 62.1 Plus
Dpse\GA22629-PA 217 GA22629-PA 31..215 82..274 423 43.5 Plus
Dpse\GA28600-PA 229 GA28600-PA 63..184 79..206 403 59.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 16:28:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22525-PA 277 GM22525-PA 1..275 1..274 1094 86.2 Plus
Dsec\GM25509-PA 165 GM25509-PA 11..153 117..264 369 50.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 16:28:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15775-PA 277 GD15775-PA 1..275 1..274 1106 87 Plus
Dsim\GD15776-PA 58 GD15776-PA 1..56 220..274 143 54.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 16:28:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18601-PA 272 GJ18601-PA 57..270 62..274 742 68.3 Plus
Dvir\GJ14052-PA 150 GJ14052-PA 2..130 109..238 352 52.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 16:28:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25237-PA 292 GK25237-PA 5..290 11..274 623 56.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 16:29:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16019-PA 277 GE16019-PA 1..275 1..274 985 81.5 Plus