BDGP Sequence Production Resources |
Search the DGRC for RE35552
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 355 |
Well: | 52 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG32581-RA |
Protein status: | RE35552.pep: gold |
Sequenced Size: | 1447 |
Gene | Date | Evidence |
---|---|---|
CG32581-RA | 2008-10-27 | Manual selection by Ken Wan |
1447 bp assembled on 2009-04-13
GenBank Submission: BT082041.1
> RE35552.complete AGTGCAATTGTTTTGAGGTGCTAAGACGTCAATTGATTGACTTGTCCACA CAATCAATTTAGCAACATTCTCTGATTCGGTTTAACAATACTTAGCACGG CAAGTAGAAGCAAACAGTGAGCGAAAACAAACAATAAAATGAGGGCAAAC AAGTCAGGTTTTGCAAACAATACACTTACAATCTTGAACGACTAAAACTT TACCCGCATCTTGGGCAAACCATGGAGGAACCGAAAAGTGTATCCACAGC GGAGCTTCCCAGCACATCAACCGGGGCATCGTCGTCCTCATCGACTTTGT CCAACAACGTGAGCTACGACAAGATAGCCTGGACTCGGGATATCACAGAA CCCTTGGCTGAGGAGTCATCTACAAGTCAATTGCGCCCGCTGGGTACCTC GATTCCAACCAATTCGACGGCATCGGAACTGAAGAAGTCCAACACTTCGT ATTCCTTTACTGGAGACTATCTATCTGGTGGCAATAAGGCCGATCTGAAG GGTGGCTATCCATTCGGCGGCACCGATACGGACACAAAAGCCAACGAAAA GGACAAGGAGAAGGAACATACCGCAGACGACTCACTCTACGAGTGCAACA TATGCCTGGACACCGCCAAGGATGCTGTGGTCAGCATGTGCGGCCATCTG TTCTGCTGGCCGTGCCTGCATCAGTGGCTCCTGACGCGTCCCAATCGCAA ACTCTGTCCCGTTTGTAAGGCTGCCGTTGATAAGGATAAGGTCATACCGC TGTACGGAAGAAATAGTACACACCAGGAAGATCCACGTAACAAAGTTCCA CCACGCCCCGCTGGACAACGTACAGAACCAGATCCTGTTCCCGGGTTCCC TGGATTCGGATTCGGCGACGGATTTCACATGTCTTTCGGTATTGGAGCTT TTCCTTTCGGGTTCATAACATCTAGGCTCAACTTTTTCGAACCACGTCCA CCTGCTGATATTAGAAGGCTACACGAAGATGAACCCTGGGCCCTGTCAAA ACTGTTCTGGCATTTTGTCGTTTTTGTGATATATGGGCTGCTCGTTCCAA TAGTGCACGGATCATCCCGATAAGAAGAACCTATATTCAAATGTCAATGG AAAGCGTGCGAAGTAATCAAATAGCAGTATCCTCCAGTTAAATCAACAAT ATTGTTAAACTCGTTGGGCTATAGTCGTTGGTGTGATTAATTAACATAAA TTGTTAGCATTCGGTTATAATTGTAATTTGAGGATTCGCAAAACAGAAGT GGATTGGGTCCCAAATTATTTCAAAAAGTCTGCAATACCCTACGACTTCA GCATAAAAAACTGAAATTTCGAAATAATTGGATCGTAATGATTTAATTCA AATGTAGATTTCAAAAATTGTATAAATTTATATTTTAAATTCTATAAAAC ATTAAAAACATTTATTTTAAAAAAAAAAAAGAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG32581-RA | 1448 | CG32581-RA | 20..1439 | 1..1420 | 7100 | 100 | Plus |
CG32581-RB | 1570 | CG32581-RB | 330..1567 | 183..1420 | 6190 | 100 | Plus |
CG8974-RA | 1504 | CG8974-RA | 98..1015 | 40..957 | 4515 | 99.4 | Plus |
CG8974-RA | 1504 | CG8974-RA | 1136..1492 | 1061..1417 | 1545 | 95.5 | Plus |
CG32581-RB | 1570 | CG32581-RB | 231..329 | 1..99 | 495 | 100 | Plus |
CG8974-RA | 1504 | CG8974-RA | 32..68 | 1..37 | 170 | 97.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 15687526..15688130 | 787..183 | 3025 | 100 | Minus |
chrX | 22417052 | chrX | 15684356..15684960 | 787..183 | 3010 | 99.8 | Minus |
chrX | 22417052 | chrX | 15686765..15687231 | 1420..954 | 2335 | 100 | Minus |
chrX | 22417052 | chrX | 15683581..15683937 | 1417..1061 | 1545 | 95.5 | Minus |
chrX | 22417052 | chrX | 15688830..15689011 | 182..1 | 895 | 99.5 | Minus |
chrX | 22417052 | chrX | 15687296..15687463 | 954..787 | 840 | 100 | Minus |
chrX | 22417052 | chrX | 15684126..15684293 | 954..787 | 795 | 98.2 | Minus |
chrX | 22417052 | chrX | 15685669..15685811 | 182..40 | 700 | 99.3 | Minus |
chr3L | 24539361 | chr3L | 15111737..15111915 | 586..764 | 310 | 78.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23542271 | X | 15797667..15798271 | 787..183 | 3025 | 100 | Minus |
X | 23542271 | X | 15794497..15795101 | 787..183 | 3010 | 99.8 | Minus |
X | 23542271 | X | 15796906..15797372 | 1420..954 | 2335 | 100 | Minus |
X | 23542271 | X | 15793722..15794078 | 1417..1061 | 1545 | 95.5 | Minus |
X | 23542271 | X | 15798971..15799152 | 182..1 | 910 | 100 | Minus |
X | 23542271 | X | 15797437..15797604 | 954..787 | 840 | 100 | Minus |
X | 23542271 | X | 15794267..15794434 | 954..787 | 795 | 98.2 | Minus |
X | 23542271 | X | 15795810..15795952 | 182..40 | 700 | 99.3 | Minus |
3L | 28110227 | 3L | 15121665..15121843 | 586..764 | 310 | 78.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23527363 | X | 15805765..15806369 | 787..183 | 3025 | 100 | Minus |
X | 23527363 | X | 15802595..15803199 | 787..183 | 3010 | 99.8 | Minus |
X | 23527363 | X | 15805004..15805470 | 1420..954 | 2335 | 100 | Minus |
X | 23527363 | X | 15801820..15802176 | 1417..1061 | 1545 | 95.5 | Minus |
X | 23527363 | X | 15807069..15807250 | 182..1 | 910 | 100 | Minus |
X | 23527363 | X | 15805535..15805702 | 954..787 | 840 | 100 | Minus |
X | 23527363 | X | 15802365..15802532 | 954..787 | 795 | 98.2 | Minus |
X | 23527363 | X | 15803908..15804050 | 182..40 | 700 | 99.3 | Minus |
3L | 28103327 | 3L | 15114765..15114943 | 586..764 | 310 | 78.2 | Plus |
X | 23527363 | X | 15804080..15804116 | 37..1 | 170 | 97.2 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
HeT-A | 6083 | HeT-A DM06920 6083bp Derived from U06920.2 (Rel. 67, Last updated, Version 14). | 4010..4123 | 124..233 | 127 | 60.5 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 15686767..15687230 | 955..1418 | 100 | <- | Minus |
chrX | 15687296..15687462 | 788..954 | 100 | <- | Minus |
chrX | 15687526..15688130 | 183..787 | 100 | <- | Minus |
chrX | 15688830..15689011 | 1..182 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG32581-RB | 1..852 | 222..1073 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG32581-RB | 1..852 | 222..1073 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG32581-RA | 1..852 | 222..1073 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG32581-RA | 1..852 | 222..1073 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG32581-RA | 5..1422 | 1..1418 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG32581-RA | 5..1422 | 1..1418 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG32581-RA | 11..1428 | 1..1418 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG32581-RA | 11..1428 | 1..1418 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 15797437..15797603 | 788..954 | 100 | <- | Minus |
X | 15796908..15797371 | 955..1418 | 100 | <- | Minus |
X | 15797667..15798271 | 183..787 | 100 | <- | Minus |
X | 15798971..15799152 | 1..182 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 15797437..15797603 | 788..954 | 100 | <- | Minus |
X | 15796908..15797371 | 955..1418 | 100 | <- | Minus |
X | 15797667..15798271 | 183..787 | 100 | <- | Minus |
X | 15798971..15799152 | 1..182 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 15797437..15797603 | 788..954 | 100 | <- | Minus |
X | 15796908..15797371 | 955..1418 | 100 | <- | Minus |
X | 15797667..15798271 | 183..787 | 100 | <- | Minus |
X | 15798971..15799152 | 1..182 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 15690941..15691404 | 955..1418 | 100 | <- | Minus |
arm_X | 15691470..15691636 | 788..954 | 100 | <- | Minus |
arm_X | 15691700..15692304 | 183..787 | 100 | <- | Minus |
arm_X | 15693004..15693185 | 1..182 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 15805006..15805469 | 955..1418 | 100 | <- | Minus |
X | 15805535..15805701 | 788..954 | 100 | <- | Minus |
X | 15805765..15806369 | 183..787 | 100 | <- | Minus |
X | 15807069..15807250 | 1..182 | 100 | Minus |
Translation from 221 to 1072
> RE35552.hyp MEEPKSVSTAELPSTSTGASSSSSTLSNNVSYDKIAWTRDITEPLAEESS TSQLRPLGTSIPTNSTASELKKSNTSYSFTGDYLSGGNKADLKGGYPFGG TDTDTKANEKDKEKEHTADDSLYECNICLDTAKDAVVSMCGHLFCWPCLH QWLLTRPNRKLCPVCKAAVDKDKVIPLYGRNSTHQEDPRNKVPPRPAGQR TEPDPVPGFPGFGFGDGFHMSFGIGAFPFGFITSRLNFFEPRPPADIRRL HEDEPWALSKLFWHFVVFVIYGLLVPIVHGSSR*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG32581-PB | 283 | CG32581-PB | 1..283 | 1..283 | 1535 | 100 | Plus |
CG32581-PA | 283 | CG32581-PA | 1..283 | 1..283 | 1535 | 100 | Plus |
CG8974-PE | 277 | CG8974-PE | 1..274 | 1..273 | 1330 | 92.7 | Plus |
CG8974-PD | 277 | CG8974-PD | 1..274 | 1..273 | 1330 | 92.7 | Plus |
CG8974-PB | 277 | CG8974-PB | 1..274 | 1..273 | 1330 | 92.7 | Plus |
Translation from 221 to 1072
> RE35552.pep MEEPKSVSTAELPSTSTGASSSSSTLSNNVSYDKIAWTRDITEPLAEESS TSQLRPLGTSIPTNSTASELKKSNTSYSFTGDYLSGGNKADLKGGYPFGG TDTDTKANEKDKEKEHTADDSLYECNICLDTAKDAVVSMCGHLFCWPCLH QWLLTRPNRKLCPVCKAAVDKDKVIPLYGRNSTHQEDPRNKVPPRPAGQR TEPDPVPGFPGFGFGDGFHMSFGIGAFPFGFITSRLNFFEPRPPADIRRL HEDEPWALSKLFWHFVVFVIYGLLVPIVHGSSR*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF19745-PA | 252 | GF19745-PA | 1..250 | 1..274 | 486 | 45.6 | Plus |
Dana\GF19854-PA | 189 | GF19854-PA | 1..186 | 1..192 | 431 | 46.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG19371-PA | 277 | GG19371-PA | 1..275 | 1..274 | 1061 | 83.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH12208-PA | 273 | GH12208-PA | 19..271 | 11..274 | 772 | 59.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG32581-PB | 283 | CG32581-PB | 1..283 | 1..283 | 1535 | 100 | Plus |
CG32581-PA | 283 | CG32581-PA | 1..283 | 1..283 | 1535 | 100 | Plus |
CG8974-PE | 277 | CG8974-PE | 1..274 | 1..273 | 1330 | 92.7 | Plus |
CG8974-PD | 277 | CG8974-PD | 1..274 | 1..273 | 1330 | 92.7 | Plus |
CG8974-PB | 277 | CG8974-PB | 1..274 | 1..273 | 1330 | 92.7 | Plus |
CG8974-PA | 277 | CG8974-PA | 1..274 | 1..273 | 1330 | 92.7 | Plus |
CG8974-PC | 277 | CG8974-PC | 1..274 | 1..273 | 1330 | 92.7 | Plus |
CG32847-PB | 164 | CG32847-PB | 10..163 | 117..275 | 389 | 47.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI15740-PA | 285 | GI15740-PA | 4..283 | 3..274 | 742 | 52.5 | Plus |
Dmoj\GI13710-PA | 151 | GI13710-PA | 2..131 | 109..238 | 322 | 49.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL22919-PA | 280 | GL22919-PA | 1..278 | 1..274 | 658 | 58.4 | Plus |
Dper\GL14111-PA | 280 | GL14111-PA | 1..278 | 1..274 | 658 | 58.4 | Plus |
Dper\GL14112-PA | 251 | GL14112-PA | 11..249 | 48..274 | 641 | 67.4 | Plus |
Dper\GL22918-PA | 241 | GL22918-PA | 1..239 | 1..274 | 637 | 58.6 | Plus |
Dper\GL12903-PA | 221 | GL12903-PA | 20..219 | 71..274 | 420 | 44 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA28677-PA | 242 | GA28677-PA | 1..231 | 1..228 | 605 | 62.1 | Plus |
Dpse\GA22629-PA | 217 | GA22629-PA | 31..215 | 82..274 | 423 | 43.5 | Plus |
Dpse\GA28600-PA | 229 | GA28600-PA | 63..184 | 79..206 | 403 | 59.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM22525-PA | 277 | GM22525-PA | 1..275 | 1..274 | 1094 | 86.2 | Plus |
Dsec\GM25509-PA | 165 | GM25509-PA | 11..153 | 117..264 | 369 | 50.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD15775-PA | 277 | GD15775-PA | 1..275 | 1..274 | 1106 | 87 | Plus |
Dsim\GD15776-PA | 58 | GD15776-PA | 1..56 | 220..274 | 143 | 54.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ18601-PA | 272 | GJ18601-PA | 57..270 | 62..274 | 742 | 68.3 | Plus |
Dvir\GJ14052-PA | 150 | GJ14052-PA | 2..130 | 109..238 | 352 | 52.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK25237-PA | 292 | GK25237-PA | 5..290 | 11..274 | 623 | 56.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE16019-PA | 277 | GE16019-PA | 1..275 | 1..274 | 985 | 81.5 | Plus |