BDGP Sequence Production Resources |
Search the DGRC for RE35715
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 357 |
Well: | 15 |
Vector: | pFlc-1 |
Associated Gene/Transcript | ATPsyn-gamma-RA |
Protein status: | RE35715.pep: gold |
Preliminary Size: | 1071 |
Sequenced Size: | 1385 |
Gene | Date | Evidence |
---|---|---|
CG7610 | 2002-01-01 | Sim4 clustering to Release 2 |
CG7610 | 2002-04-17 | Blastp of sequenced clone |
CG7610 | 2003-01-01 | Sim4 clustering to Release 3 |
ATPsyn-gamma | 2008-04-29 | Release 5.5 accounting |
ATPsyn-gamma | 2008-08-15 | Release 5.9 accounting |
ATPsyn-gamma | 2008-12-18 | 5.12 accounting |
1385 bp (1385 high quality bases) assembled on 2002-04-17
GenBank Submission: AY113454
> RE35715.complete GGCAGACCTCTTAATCCTTATCAATTATTATTCTGTTTTTAACTCTATTG TCATAATTATGAGTTACATAAATTCAAATTAATTTCAAGCTATATTGTGC ATTCTGAAGCTTTCCAAAGAAGTTTTGTATTTTATCCAATATTAATAGTT ATATGTAGCACAAATCCATTATCCGAAATTTCCATAATTAAAATAAATTA TTTAATATAATATTTTACCGTTCACCACGAATCGCCACCGCGTTAACCCG AACTGGGTGGCAACTCTGCTCGGTGTTATAACACTCGTTGTGGCGCAGCC AACTTAACGCAAGGGAATCTTCGACAACTCACAGGATGATGATGCAACGC ACCCAGCTCCTGCTGCCCCTGGCCATGGAGGCCACCATGCTGGCCCAGCA GCAGCGTGGCATGGCCACCCTGAAGATGATTTCCATCCGCCTGAAGTCGG TGAAGAACATTCAGAAAATTACGCAATCGATGAAGATGGTGTCCGCTGCC AAGTACGCTCGTGCCGAGCGAGACTTGAAGGCGGCTCGTCCTTACGGCAT CGGCGCCCAGCAGTTCTTCGAGAAGACGGAGATCCAGCCGGACGAGAAGG CGGAGCCCAAGAAGCTGCTCATCGCAGTGACTTCGGACCGTGGTCTTTGC GGTGCCGTCCACACTGGTGTGGCCCGTCTCATTCGCGGCGAACTGGCCCA GGACGAGGCCAACACTAAGGTGTTCTGCGTGGGCGACAAGTCGCGCGCGA TTCTGTCCCGTCTGTACGGCAAGAACATCCTGATGGTGGCCAACGAGGTG GGCCGACTGCCCCCCACTTTCCTGGACGCCTCGAAGATTGCCAACGAGGT TCTGCAGACCGGTTACGATTACACCGAGGGCAAGATCGTGTACAACCGTT TCAAGTCGGTGGTGTCCTACCAGTGCTCCACCCTCCCCATCTTCAGCGGA TCCACCGTGGAGAAGTCGGAGAAGCTTGCCGTCTACGACTCGCTCGACAG CGACGTGGTCAAGAGCTATCTGGAGTTCTCGCTGGCCTCGCTCATCTTCT ACACCATGAAGGAGGGCGCCTGCTCGGAGCAGTCCTCCCGTATGACTGCC ATGGACAACGCTTCCAAGAACGCCGGTGAGATGATCGACAAGCTGACCCT CACCTTCAACCGTACCCGACAGGCGGTCATCACTCGCGAGCTGATTGAAA TCATCTCCGGTGCCGCCGCCCTCACATAAGCGAATGGAATGTGTTCGAAC AGCTCTAACGATTCATACAGCTAATTGCATATGGTGCCAGGCACCTGGAG CTACGCCTGGAGCCCTAGTAATGTTACTCTTTCAGAAAAACCCCAGAATA AATAGCGTGGAACGAACGGAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
ATPsyn-gamma-RB | 1437 | ATPsyn-gamma-RB | 1..1372 | 1..1372 | 6800 | 99.7 | Plus |
ATPsyn-gamma-RC | 1141 | ATPsyn-gamma-RC | 72..1132 | 312..1372 | 5275 | 99.8 | Plus |
ATPsyn-gamma-RA | 1395 | ATPsyn-gamma-RA | 312..1351 | 333..1372 | 5170 | 99.8 | Plus |
ATPsyn-gamma-RA | 1395 | ATPsyn-gamma-RA | 1..314 | 1..314 | 1540 | 99.3 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 25570317..25571372 | 314..1369 | 99 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ATPsyn-gamma-RC | 1..894 | 336..1229 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ATPsyn-gamma-RC | 1..894 | 336..1229 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ATPsyn-gamma-RA | 1..894 | 336..1229 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ATPsyn-gamma-RC | 1..894 | 336..1229 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ATPsyn-gamma-RA | 1..894 | 336..1229 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ATPsyn-gamma-RB | 1..1368 | 1..1369 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ATPsyn-gamma-RB | 1..1368 | 1..1368 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ATPsyn-gamma-RB | 28..1395 | 1..1368 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ATPsyn-gamma-RB | 1..1368 | 1..1369 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ATPsyn-gamma-RB | 28..1395 | 1..1368 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 29747714..29748769 | 314..1369 | 99 | <- | Minus |
3R | 29748824..29749136 | 1..313 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 29747714..29748769 | 314..1369 | 99 | <- | Minus |
3R | 29748824..29749136 | 1..313 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 29747714..29748769 | 314..1369 | 99 | <- | Minus |
3R | 29748824..29749136 | 1..313 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 25573436..25574491 | 314..1369 | 99 | <- | Minus |
arm_3R | 25574546..25574858 | 1..313 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 29488545..29489600 | 314..1369 | 99 | <- | Minus |
3R | 29489655..29489967 | 1..313 | 99 | Minus |
Translation from 335 to 1228
> RE35715.pep MMMQRTQLLLPLAMEATMLAQQQRGMATLKMISIRLKSVKNIQKITQSMK MVSAAKYARAERDLKAARPYGIGAQQFFEKTEIQPDEKAEPKKLLIAVTS DRGLCGAVHTGVARLIRGELAQDEANTKVFCVGDKSRAILSRLYGKNILM VANEVGRLPPTFLDASKIANEVLQTGYDYTEGKIVYNRFKSVVSYQCSTL PIFSGSTVEKSEKLAVYDSLDSDVVKSYLEFSLASLIFYTMKEGACSEQS SRMTAMDNASKNAGEMIDKLTLTFNRTRQAVITRELIEIISGAAALT*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF22866-PA | 297 | GF22866-PA | 1..297 | 1..297 | 1478 | 92.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG12004-PA | 297 | GG12004-PA | 1..297 | 1..297 | 1566 | 99.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH13985-PA | 297 | GH13985-PA | 1..297 | 1..297 | 1451 | 91.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
ATPsyngamma-PC | 297 | CG7610-PC | 1..297 | 1..297 | 1463 | 100 | Plus |
ATPsyngamma-PB | 297 | CG7610-PB | 1..297 | 1..297 | 1463 | 100 | Plus |
ATPsyngamma-PA | 297 | CG7610-PA | 1..297 | 1..297 | 1463 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI22330-PA | 297 | GI22330-PA | 1..297 | 1..297 | 1443 | 90.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL23812-PA | 297 | GL23812-PA | 1..297 | 1..297 | 1470 | 91.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA20479-PA | 297 | GA20479-PA | 1..297 | 1..297 | 1470 | 91.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM12224-PA | 297 | GM12224-PA | 1..297 | 1..297 | 1566 | 99.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD17673-PA | 297 | GD17673-PA | 1..297 | 1..297 | 1564 | 99.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ10518-PA | 297 | GJ10518-PA | 1..297 | 1..297 | 1443 | 90.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK11166-PA | 297 | GK11166-PA | 1..297 | 1..297 | 1473 | 92.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\ATPsyn-gamma-PA | 297 | GE10430-PA | 1..297 | 1..297 | 1566 | 99.7 | Plus |
Translation from 335 to 1228
> RE35715.hyp MMMQRTQLLLPLAMEATMLAQQQRGMATLKMISIRLKSVKNIQKITQSMK MVSAAKYARAERDLKAARPYGIGAQQFFEKTEIQPDEKAEPKKLLIAVTS DRGLCGAVHTGVARLIRGELAQDEANTKVFCVGDKSRAILSRLYGKNILM VANEVGRLPPTFLDASKIANEVLQTGYDYTEGKIVYNRFKSVVSYQCSTL PIFSGSTVEKSEKLAVYDSLDSDVVKSYLEFSLASLIFYTMKEGACSEQS SRMTAMDNASKNAGEMIDKLTLTFNRTRQAVITRELIEIISGAAALT*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
ATPsyn-gamma-PC | 297 | CG7610-PC | 1..297 | 1..297 | 1463 | 100 | Plus |
ATPsyn-gamma-PB | 297 | CG7610-PB | 1..297 | 1..297 | 1463 | 100 | Plus |
ATPsyn-gamma-PA | 297 | CG7610-PA | 1..297 | 1..297 | 1463 | 100 | Plus |