Clone RE35715 Report

Search the DGRC for RE35715

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:357
Well:15
Vector:pFlc-1
Associated Gene/TranscriptATPsyn-gamma-RA
Protein status:RE35715.pep: gold
Preliminary Size:1071
Sequenced Size:1385

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7610 2002-01-01 Sim4 clustering to Release 2
CG7610 2002-04-17 Blastp of sequenced clone
CG7610 2003-01-01 Sim4 clustering to Release 3
ATPsyn-gamma 2008-04-29 Release 5.5 accounting
ATPsyn-gamma 2008-08-15 Release 5.9 accounting
ATPsyn-gamma 2008-12-18 5.12 accounting

Clone Sequence Records

RE35715.complete Sequence

1385 bp (1385 high quality bases) assembled on 2002-04-17

GenBank Submission: AY113454

> RE35715.complete
GGCAGACCTCTTAATCCTTATCAATTATTATTCTGTTTTTAACTCTATTG
TCATAATTATGAGTTACATAAATTCAAATTAATTTCAAGCTATATTGTGC
ATTCTGAAGCTTTCCAAAGAAGTTTTGTATTTTATCCAATATTAATAGTT
ATATGTAGCACAAATCCATTATCCGAAATTTCCATAATTAAAATAAATTA
TTTAATATAATATTTTACCGTTCACCACGAATCGCCACCGCGTTAACCCG
AACTGGGTGGCAACTCTGCTCGGTGTTATAACACTCGTTGTGGCGCAGCC
AACTTAACGCAAGGGAATCTTCGACAACTCACAGGATGATGATGCAACGC
ACCCAGCTCCTGCTGCCCCTGGCCATGGAGGCCACCATGCTGGCCCAGCA
GCAGCGTGGCATGGCCACCCTGAAGATGATTTCCATCCGCCTGAAGTCGG
TGAAGAACATTCAGAAAATTACGCAATCGATGAAGATGGTGTCCGCTGCC
AAGTACGCTCGTGCCGAGCGAGACTTGAAGGCGGCTCGTCCTTACGGCAT
CGGCGCCCAGCAGTTCTTCGAGAAGACGGAGATCCAGCCGGACGAGAAGG
CGGAGCCCAAGAAGCTGCTCATCGCAGTGACTTCGGACCGTGGTCTTTGC
GGTGCCGTCCACACTGGTGTGGCCCGTCTCATTCGCGGCGAACTGGCCCA
GGACGAGGCCAACACTAAGGTGTTCTGCGTGGGCGACAAGTCGCGCGCGA
TTCTGTCCCGTCTGTACGGCAAGAACATCCTGATGGTGGCCAACGAGGTG
GGCCGACTGCCCCCCACTTTCCTGGACGCCTCGAAGATTGCCAACGAGGT
TCTGCAGACCGGTTACGATTACACCGAGGGCAAGATCGTGTACAACCGTT
TCAAGTCGGTGGTGTCCTACCAGTGCTCCACCCTCCCCATCTTCAGCGGA
TCCACCGTGGAGAAGTCGGAGAAGCTTGCCGTCTACGACTCGCTCGACAG
CGACGTGGTCAAGAGCTATCTGGAGTTCTCGCTGGCCTCGCTCATCTTCT
ACACCATGAAGGAGGGCGCCTGCTCGGAGCAGTCCTCCCGTATGACTGCC
ATGGACAACGCTTCCAAGAACGCCGGTGAGATGATCGACAAGCTGACCCT
CACCTTCAACCGTACCCGACAGGCGGTCATCACTCGCGAGCTGATTGAAA
TCATCTCCGGTGCCGCCGCCCTCACATAAGCGAATGGAATGTGTTCGAAC
AGCTCTAACGATTCATACAGCTAATTGCATATGGTGCCAGGCACCTGGAG
CTACGCCTGGAGCCCTAGTAATGTTACTCTTTCAGAAAAACCCCAGAATA
AATAGCGTGGAACGAACGGAAAAAAAAAAAAAAAA

RE35715.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:15:39
Subject Length Description Subject Range Query Range Score Percent Strand
ATPsyn-gamma-RB 1437 ATPsyn-gamma-RB 1..1372 1..1372 6800 99.7 Plus
ATPsyn-gamma-RC 1141 ATPsyn-gamma-RC 72..1132 312..1372 5275 99.8 Plus
ATPsyn-gamma-RA 1395 ATPsyn-gamma-RA 312..1351 333..1372 5170 99.8 Plus
ATPsyn-gamma-RA 1395 ATPsyn-gamma-RA 1..314 1..314 1540 99.3 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 04:57:08
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 25570318..25571374 1368..312 5150 99.1 Minus
chr3R 27901430 chr3R 25571426..25571739 314..1 1525 99 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:52:00 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 04:57:07
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29747711..29748771 1372..312 5275 99.8 Minus
3R 32079331 3R 29748823..29749136 314..1 1540 99.4 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:45:45
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 29488542..29489602 1372..312 5275 99.8 Minus
3R 31820162 3R 29489654..29489967 314..1 1540 99.3 Minus
Blast to na_te.dros performed on 2019-03-16 04:57:07 has no hits.

RE35715.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 04:57:45 Download gff for RE35715.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 25570317..25571372 314..1369 99 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:12:11 Download gff for RE35715.complete
Subject Subject Range Query Range Percent Splice Strand
ATPsyn-gamma-RC 1..894 336..1229 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:07:24 Download gff for RE35715.complete
Subject Subject Range Query Range Percent Splice Strand
ATPsyn-gamma-RC 1..894 336..1229 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:46:41 Download gff for RE35715.complete
Subject Subject Range Query Range Percent Splice Strand
ATPsyn-gamma-RA 1..894 336..1229 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:55:41 Download gff for RE35715.complete
Subject Subject Range Query Range Percent Splice Strand
ATPsyn-gamma-RC 1..894 336..1229 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:55:18 Download gff for RE35715.complete
Subject Subject Range Query Range Percent Splice Strand
ATPsyn-gamma-RA 1..894 336..1229 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:44:12 Download gff for RE35715.complete
Subject Subject Range Query Range Percent Splice Strand
ATPsyn-gamma-RB 1..1368 1..1369 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:07:24 Download gff for RE35715.complete
Subject Subject Range Query Range Percent Splice Strand
ATPsyn-gamma-RB 1..1368 1..1368 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:46:41 Download gff for RE35715.complete
Subject Subject Range Query Range Percent Splice Strand
ATPsyn-gamma-RB 28..1395 1..1368 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:55:41 Download gff for RE35715.complete
Subject Subject Range Query Range Percent Splice Strand
ATPsyn-gamma-RB 1..1368 1..1369 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:55:18 Download gff for RE35715.complete
Subject Subject Range Query Range Percent Splice Strand
ATPsyn-gamma-RB 28..1395 1..1368 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:57:45 Download gff for RE35715.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29747714..29748769 314..1369 99 <- Minus
3R 29748824..29749136 1..313 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:57:45 Download gff for RE35715.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29747714..29748769 314..1369 99 <- Minus
3R 29748824..29749136 1..313 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:57:45 Download gff for RE35715.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29747714..29748769 314..1369 99 <- Minus
3R 29748824..29749136 1..313 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:46:41 Download gff for RE35715.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25573436..25574491 314..1369 99 <- Minus
arm_3R 25574546..25574858 1..313 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:28:01 Download gff for RE35715.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29488545..29489600 314..1369 99 <- Minus
3R 29489655..29489967 1..313 99   Minus

RE35715.pep Sequence

Translation from 335 to 1228

> RE35715.pep
MMMQRTQLLLPLAMEATMLAQQQRGMATLKMISIRLKSVKNIQKITQSMK
MVSAAKYARAERDLKAARPYGIGAQQFFEKTEIQPDEKAEPKKLLIAVTS
DRGLCGAVHTGVARLIRGELAQDEANTKVFCVGDKSRAILSRLYGKNILM
VANEVGRLPPTFLDASKIANEVLQTGYDYTEGKIVYNRFKSVVSYQCSTL
PIFSGSTVEKSEKLAVYDSLDSDVVKSYLEFSLASLIFYTMKEGACSEQS
SRMTAMDNASKNAGEMIDKLTLTFNRTRQAVITRELIEIISGAAALT*

RE35715.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 02:13:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22866-PA 297 GF22866-PA 1..297 1..297 1478 92.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 02:13:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12004-PA 297 GG12004-PA 1..297 1..297 1566 99.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 02:13:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13985-PA 297 GH13985-PA 1..297 1..297 1451 91.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:20:03
Subject Length Description Subject Range Query Range Score Percent Strand
ATPsyngamma-PC 297 CG7610-PC 1..297 1..297 1463 100 Plus
ATPsyngamma-PB 297 CG7610-PB 1..297 1..297 1463 100 Plus
ATPsyngamma-PA 297 CG7610-PA 1..297 1..297 1463 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 02:13:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22330-PA 297 GI22330-PA 1..297 1..297 1443 90.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 02:13:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23812-PA 297 GL23812-PA 1..297 1..297 1470 91.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 02:13:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20479-PA 297 GA20479-PA 1..297 1..297 1470 91.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 02:13:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12224-PA 297 GM12224-PA 1..297 1..297 1566 99.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 02:13:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17673-PA 297 GD17673-PA 1..297 1..297 1564 99.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 02:13:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10518-PA 297 GJ10518-PA 1..297 1..297 1443 90.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 02:13:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11166-PA 297 GK11166-PA 1..297 1..297 1473 92.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 02:13:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\ATPsyn-gamma-PA 297 GE10430-PA 1..297 1..297 1566 99.7 Plus

RE35715.hyp Sequence

Translation from 335 to 1228

> RE35715.hyp
MMMQRTQLLLPLAMEATMLAQQQRGMATLKMISIRLKSVKNIQKITQSMK
MVSAAKYARAERDLKAARPYGIGAQQFFEKTEIQPDEKAEPKKLLIAVTS
DRGLCGAVHTGVARLIRGELAQDEANTKVFCVGDKSRAILSRLYGKNILM
VANEVGRLPPTFLDASKIANEVLQTGYDYTEGKIVYNRFKSVVSYQCSTL
PIFSGSTVEKSEKLAVYDSLDSDVVKSYLEFSLASLIFYTMKEGACSEQS
SRMTAMDNASKNAGEMIDKLTLTFNRTRQAVITRELIEIISGAAALT*

RE35715.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:19:03
Subject Length Description Subject Range Query Range Score Percent Strand
ATPsyn-gamma-PC 297 CG7610-PC 1..297 1..297 1463 100 Plus
ATPsyn-gamma-PB 297 CG7610-PB 1..297 1..297 1463 100 Plus
ATPsyn-gamma-PA 297 CG7610-PA 1..297 1..297 1463 100 Plus