BDGP Sequence Production Resources |
Search the DGRC for RE35942
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 359 |
Well: | 42 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG18549-RA |
Protein status: | RE35942.pep: gold |
Preliminary Size: | 466 |
Sequenced Size: | 2020 |
Gene | Date | Evidence |
---|---|---|
CG18549 | 2001-12-17 | Blastp of sequenced clone |
CG18549 | 2002-01-01 | Sim4 clustering to Release 2 |
CG5509 | 2002-01-01 | Sim4 clustering to Release 2 |
CG18549 | 2008-04-29 | Release 5.5 accounting |
CG18549 | 2008-08-15 | Release 5.9 accounting |
CG18549 | 2008-12-18 | 5.12 accounting |
2020 bp (2020 high quality bases) assembled on 2001-12-17
GenBank Submission: AY071334
> RE35942.complete CATTCAACTCTCGGTCCTCGGCGCGTAAAGATTGCATTTACATTTTGCTC AGTATTTAGCTTTGTGTTTTTGCGTATTTTTATTTATATGTGTAAATCGT TATTTAAGTATTTGCATTGTGTTTAATTGTGCTTGCGATAAGTGCTAAAC AGATGCGTCCAGTTGCATCTGCCTATTGTGGGATTTCTAGCTGTAATTGA GCGATAAAGAGAGTTGCAGTTCGCGACACCGATCTCCCCCTCTCTGGTTA CGTCGGCAACTGCAAACGCAAATGCAAAAGTGCGCGGCAAGTTAATTTAA TTCGGTTCTATTGTGATTGGAAAAGACATAGCGCAGCAGCAGGATGGATT TCAAATTCCTAATGATACTCATCCTGGGCTTTGGCTTTATGTTCGTCTTT ACGGCATTCCAGACCATGTGTAACATCGAGAAAACCATACTGGATAGCAT TTCCCAGGAAGATGATACCTTCAAGGGTGAGGGCTACACCAGCCTGGCCA TTATCTACCTGTTCTTCTCGCTCTCCAATTGGCTGGCACCCTCGTTCATT TCGTTCACCGGACCACGAGTGGCCATGGTCGTGGGAGCACTGACCTATAC AGCCTTCATGATCACGTTCATGTTCCCGTCGACGGTATTGCTGTACGTGG GCAGCGCAGTGCTGGGATTGGGTGCCTCGATCACTTGGACGGGACAGGGA ACGTATCTGGCGCGCTGCAGTGAATCTTCCACGATTTCCCGTAACTCTGG CGTCTTCTGGGCCCTGCTGCAGTGCAGCATGTTCATTGGGAATCTGTTCG TGTACTATCAGTTCCAGGACAAGACCCGCATCGACAAGGAGACACGGAAT CTGGTCATCGGCGTGCTCACGGTAATTGCTGTGCTGGGCATCGTGTTTCT GGCCGCACTGAGATTCATGGCCGATAATGCCGAGCACGACAACGAGCTGG AACAGAAGCACACGGGCTGTGGACAGGCCATATACGCATTGAAGTCCGCA GGACAATTGTTCCTCACCAAAAAGATGCTGCTCCTTAGTCTGGCCTTCTT TTACACAGGCCTGGAGCTGTCATTCTTTAGCGGAGTTTTTGGATCAGCGA TTGGATTCACCACGAAAATAGCCGAAACACCGAAGGAGATCGTTGGACTG GTGGGCATTTGCATTGGAGCCGGCGAGGTCTTTGGAGGAGGACTATTCGG CATACTGGGCAACAAGACGACGAGATATGGACGCGATCCCATCGTGATTG CCGGCTATGTGATGCACATGGCAGCCTTCTTCATGACGTTCATCAACCTG CCGAACAGTGCACCGTTTAAAGATACCACCGATATATCCTATCTGGACCC GCCCCGAGCCAGCATCGCCTTGGTGTGTGCCTTCCTTTTGGGCCTGGGCG ATGCCTGTTTCAACACTCAGATCTACTCCATGCTTGGCGGGGAGTATGTG AACAATGCCGTGGGAGCCTTTGCCCTGTTCAAGTTCACCCAGTCGGTGGC GGCGGCCATTAGCTTCTTCTACTCCTCGCACTTCGGGCTGTACGTGCAGC TGGGCATCCTGGTGGTTATGGGAACCATTGGCACCATTGCCTTCGTCTTC GTAGAGTGGGGCTTCAAGCGGCAGCACCGCGAGCAGGAGGCGTTGGAGAA GTAATTCCGTTGTGGGACTCAGAGGATCTAGAGTATTAGATGCAGGTTCT TGTTAGAACTCTAGGGCTAGGGCCATTTGTCCGTGTTTGTTAAATTCCTC GGAATGCTTTAAATCCGTGCGACTGCGTCGTCTTCCTAGACAATAACTGA TAAGTGTTGTTGCGCGCTATTGTTGCTAAATATACGTATTTTAATGTTGG CATTCCAAAAAACGTAATTGTAATCTAGTTGTCTATGTTTTTATATGTGT GTATTGTATATGTGCGTTTATTTATTTTAAGCGGCGATTGTGCAAATATA AGATAGTAAACCACAAATTTGGAGTATTATAAGAAATATATAACGAATTT TAAGAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG18549-RA | 2286 | CG18549-RA | 219..2226 | 1..2008 | 10040 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 8280797..8281744 | 1057..2004 | 4740 | 100 | Plus |
chr3R | 27901430 | chr3R | 8280274..8280732 | 601..1059 | 2295 | 100 | Plus |
chr3R | 27901430 | chr3R | 8274674..8275103 | 1..430 | 2135 | 99.8 | Plus |
chr3R | 27901430 | chr3R | 8280031..8280202 | 429..600 | 860 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 12455408..12456359 | 1057..2008 | 4760 | 100 | Plus |
3R | 32079331 | 3R | 12454885..12455343 | 601..1059 | 2295 | 100 | Plus |
3R | 32079331 | 3R | 12449296..12449725 | 1..430 | 2150 | 100 | Plus |
3R | 32079331 | 3R | 12454642..12454813 | 429..600 | 860 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 12196239..12197190 | 1057..2008 | 4760 | 100 | Plus |
3R | 31820162 | 3R | 12195716..12196174 | 601..1059 | 2295 | 100 | Plus |
3R | 31820162 | 3R | 12190127..12190556 | 1..430 | 2150 | 100 | Plus |
3R | 31820162 | 3R | 12195473..12195644 | 429..600 | 860 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
accord2 | 7650 | accord2 QBERT 7650bp | 6208..6323 | 36..148 | 130 | 61.5 | Plus |
Dvir\Tv1 | 6868 | Dvir\Tv1 6868bp Derived from AF056940 (Rel. 62, Last updated, Version 4). | 40..93 | 148..97 | 120 | 74.1 | Minus |
Dvir\Tv1 | 6868 | Dvir\Tv1 6868bp Derived from AF056940 (Rel. 62, Last updated, Version 4). | 6455..6508 | 148..97 | 120 | 74.1 | Minus |
Idefix | 7411 | Idefix DME9736 7411bp Derived from AJ009736 (e1371475) (Rel. 58, Last updated, Version 1). | 6225..6342 | 178..62 | 120 | 62.9 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 8274674..8275103 | 1..430 | 99 | -> | Plus |
chr3R | 8280033..8280202 | 431..600 | 100 | -> | Plus |
chr3R | 8280274..8280731 | 601..1058 | 100 | -> | Plus |
chr3R | 8280799..8281744 | 1059..2004 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG18549-RA | 1..1311 | 344..1654 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG18549-RA | 1..1311 | 344..1654 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG18549-RA | 1..1311 | 344..1654 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG18549-RA | 1..1311 | 344..1654 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG18549-RA | 1..1311 | 344..1654 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG18549-RA | 1..2004 | 1..2004 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG18549-RA | 1..2004 | 1..2004 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG18549-RA | 1..2004 | 1..2004 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG18549-RA | 1..2004 | 1..2004 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG18549-RA | 1..2004 | 1..2004 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 12454644..12454813 | 431..600 | 100 | -> | Plus |
3R | 12449296..12449725 | 1..430 | 100 | -> | Plus |
3R | 12454885..12455342 | 601..1058 | 100 | -> | Plus |
3R | 12455410..12456355 | 1059..2004 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 12454644..12454813 | 431..600 | 100 | -> | Plus |
3R | 12449296..12449725 | 1..430 | 100 | -> | Plus |
3R | 12454885..12455342 | 601..1058 | 100 | -> | Plus |
3R | 12455410..12456355 | 1059..2004 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 12454644..12454813 | 431..600 | 100 | -> | Plus |
3R | 12449296..12449725 | 1..430 | 100 | -> | Plus |
3R | 12454885..12455342 | 601..1058 | 100 | -> | Plus |
3R | 12455410..12456355 | 1059..2004 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 8275018..8275447 | 1..430 | 100 | -> | Plus |
arm_3R | 8280366..8280535 | 431..600 | 100 | -> | Plus |
arm_3R | 8280607..8281064 | 601..1058 | 100 | -> | Plus |
arm_3R | 8281132..8282077 | 1059..2004 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 12190127..12190556 | 1..430 | 100 | -> | Plus |
3R | 12195475..12195644 | 431..600 | 100 | -> | Plus |
3R | 12195716..12196173 | 601..1058 | 100 | -> | Plus |
3R | 12196241..12197186 | 1059..2004 | 100 | Plus |
Translation from 343 to 1653
> RE35942.hyp MDFKFLMILILGFGFMFVFTAFQTMCNIEKTILDSISQEDDTFKGEGYTS LAIIYLFFSLSNWLAPSFISFTGPRVAMVVGALTYTAFMITFMFPSTVLL YVGSAVLGLGASITWTGQGTYLARCSESSTISRNSGVFWALLQCSMFIGN LFVYYQFQDKTRIDKETRNLVIGVLTVIAVLGIVFLAALRFMADNAEHDN ELEQKHTGCGQAIYALKSAGQLFLTKKMLLLSLAFFYTGLELSFFSGVFG SAIGFTTKIAETPKEIVGLVGICIGAGEVFGGGLFGILGNKTTRYGRDPI VIAGYVMHMAAFFMTFINLPNSAPFKDTTDISYLDPPRASIALVCAFLLG LGDACFNTQIYSMLGGEYVNNAVGAFALFKFTQSVAAAISFFYSSHFGLY VQLGILVVMGTIGTIAFVFVEWGFKRQHREQEALEK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG18549-PA | 436 | CG18549-PA | 1..436 | 1..436 | 2235 | 100 | Plus |
CG4928-PB | 538 | CG4928-PB | 46..490 | 8..436 | 213 | 22.9 | Plus |
CG4928-PA | 538 | CG4928-PA | 46..490 | 8..436 | 213 | 22.9 | Plus |
Translation from 343 to 1653
> RE35942.pep MDFKFLMILILGFGFMFVFTAFQTMCNIEKTILDSISQEDDTFKGEGYTS LAIIYLFFSLSNWLAPSFISFTGPRVAMVVGALTYTAFMITFMFPSTVLL YVGSAVLGLGASITWTGQGTYLARCSESSTISRNSGVFWALLQCSMFIGN LFVYYQFQDKTRIDKETRNLVIGVLTVIAVLGIVFLAALRFMADNAEHDN ELEQKHTGCGQAIYALKSAGQLFLTKKMLLLSLAFFYTGLELSFFSGVFG SAIGFTTKIAETPKEIVGLVGICIGAGEVFGGGLFGILGNKTTRYGRDPI VIAGYVMHMAAFFMTFINLPNSAPFKDTTDISYLDPPRASIALVCAFLLG LGDACFNTQIYSMLGGEYVNNAVGAFALFKFTQSVAAAISFFYSSHFGLY VQLGILVVMGTIGTIAFVFVEWGFKRQHREQEALEK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF17962-PA | 436 | GF17962-PA | 1..436 | 1..436 | 2218 | 96.8 | Plus |
Dana\GF12591-PA | 517 | GF12591-PA | 67..514 | 8..434 | 171 | 21.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG18971-PA | 436 | GG18971-PA | 1..436 | 1..436 | 2267 | 99.1 | Plus |
Dere\GG19090-PA | 538 | GG19090-PA | 46..475 | 8..421 | 171 | 22.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH21251-PA | 433 | GH21251-PA | 1..432 | 1..432 | 1957 | 87.3 | Plus |
Dgri\GH24749-PA | 539 | GH24749-PA | 46..475 | 8..421 | 172 | 22.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG18549-PA | 436 | CG18549-PA | 1..436 | 1..436 | 2235 | 100 | Plus |
CG4928-PB | 538 | CG4928-PB | 46..490 | 8..436 | 213 | 22.9 | Plus |
CG4928-PA | 538 | CG4928-PA | 46..490 | 8..436 | 213 | 22.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI10488-PA | 441 | GI10488-PA | 1..432 | 1..432 | 1977 | 87.5 | Plus |
Dmoj\GI15358-PA | 540 | GI15358-PA | 46..475 | 8..421 | 175 | 22.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL27317-PA | 258 | GL27317-PA | 1..258 | 1..258 | 1255 | 94.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA27031-PA | 436 | GA27031-PA | 1..436 | 1..436 | 2116 | 95.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM24039-PA | 436 | GM24039-PA | 1..436 | 1..436 | 2282 | 100 | Plus |
Dsec\GM13477-PA | 538 | GM13477-PA | 46..475 | 8..421 | 170 | 22.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD18839-PA | 436 | GD18839-PA | 1..436 | 1..436 | 2282 | 100 | Plus |
Dsim\GD17323-PA | 538 | GD17323-PA | 46..475 | 8..421 | 170 | 22.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ23168-PA | 433 | GJ23168-PA | 1..432 | 1..432 | 1951 | 86.8 | Plus |
Dvir\GJ18836-PA | 540 | GJ18836-PA | 46..475 | 8..421 | 177 | 23.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK12824-PA | 437 | GK12824-PA | 1..437 | 1..436 | 2113 | 94.3 | Plus |