Clone RE35942 Report

Search the DGRC for RE35942

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:359
Well:42
Vector:pFlc-1
Associated Gene/TranscriptCG18549-RA
Protein status:RE35942.pep: gold
Preliminary Size:466
Sequenced Size:2020

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG18549 2001-12-17 Blastp of sequenced clone
CG18549 2002-01-01 Sim4 clustering to Release 2
CG5509 2002-01-01 Sim4 clustering to Release 2
CG18549 2008-04-29 Release 5.5 accounting
CG18549 2008-08-15 Release 5.9 accounting
CG18549 2008-12-18 5.12 accounting

Clone Sequence Records

RE35942.complete Sequence

2020 bp (2020 high quality bases) assembled on 2001-12-17

GenBank Submission: AY071334

> RE35942.complete
CATTCAACTCTCGGTCCTCGGCGCGTAAAGATTGCATTTACATTTTGCTC
AGTATTTAGCTTTGTGTTTTTGCGTATTTTTATTTATATGTGTAAATCGT
TATTTAAGTATTTGCATTGTGTTTAATTGTGCTTGCGATAAGTGCTAAAC
AGATGCGTCCAGTTGCATCTGCCTATTGTGGGATTTCTAGCTGTAATTGA
GCGATAAAGAGAGTTGCAGTTCGCGACACCGATCTCCCCCTCTCTGGTTA
CGTCGGCAACTGCAAACGCAAATGCAAAAGTGCGCGGCAAGTTAATTTAA
TTCGGTTCTATTGTGATTGGAAAAGACATAGCGCAGCAGCAGGATGGATT
TCAAATTCCTAATGATACTCATCCTGGGCTTTGGCTTTATGTTCGTCTTT
ACGGCATTCCAGACCATGTGTAACATCGAGAAAACCATACTGGATAGCAT
TTCCCAGGAAGATGATACCTTCAAGGGTGAGGGCTACACCAGCCTGGCCA
TTATCTACCTGTTCTTCTCGCTCTCCAATTGGCTGGCACCCTCGTTCATT
TCGTTCACCGGACCACGAGTGGCCATGGTCGTGGGAGCACTGACCTATAC
AGCCTTCATGATCACGTTCATGTTCCCGTCGACGGTATTGCTGTACGTGG
GCAGCGCAGTGCTGGGATTGGGTGCCTCGATCACTTGGACGGGACAGGGA
ACGTATCTGGCGCGCTGCAGTGAATCTTCCACGATTTCCCGTAACTCTGG
CGTCTTCTGGGCCCTGCTGCAGTGCAGCATGTTCATTGGGAATCTGTTCG
TGTACTATCAGTTCCAGGACAAGACCCGCATCGACAAGGAGACACGGAAT
CTGGTCATCGGCGTGCTCACGGTAATTGCTGTGCTGGGCATCGTGTTTCT
GGCCGCACTGAGATTCATGGCCGATAATGCCGAGCACGACAACGAGCTGG
AACAGAAGCACACGGGCTGTGGACAGGCCATATACGCATTGAAGTCCGCA
GGACAATTGTTCCTCACCAAAAAGATGCTGCTCCTTAGTCTGGCCTTCTT
TTACACAGGCCTGGAGCTGTCATTCTTTAGCGGAGTTTTTGGATCAGCGA
TTGGATTCACCACGAAAATAGCCGAAACACCGAAGGAGATCGTTGGACTG
GTGGGCATTTGCATTGGAGCCGGCGAGGTCTTTGGAGGAGGACTATTCGG
CATACTGGGCAACAAGACGACGAGATATGGACGCGATCCCATCGTGATTG
CCGGCTATGTGATGCACATGGCAGCCTTCTTCATGACGTTCATCAACCTG
CCGAACAGTGCACCGTTTAAAGATACCACCGATATATCCTATCTGGACCC
GCCCCGAGCCAGCATCGCCTTGGTGTGTGCCTTCCTTTTGGGCCTGGGCG
ATGCCTGTTTCAACACTCAGATCTACTCCATGCTTGGCGGGGAGTATGTG
AACAATGCCGTGGGAGCCTTTGCCCTGTTCAAGTTCACCCAGTCGGTGGC
GGCGGCCATTAGCTTCTTCTACTCCTCGCACTTCGGGCTGTACGTGCAGC
TGGGCATCCTGGTGGTTATGGGAACCATTGGCACCATTGCCTTCGTCTTC
GTAGAGTGGGGCTTCAAGCGGCAGCACCGCGAGCAGGAGGCGTTGGAGAA
GTAATTCCGTTGTGGGACTCAGAGGATCTAGAGTATTAGATGCAGGTTCT
TGTTAGAACTCTAGGGCTAGGGCCATTTGTCCGTGTTTGTTAAATTCCTC
GGAATGCTTTAAATCCGTGCGACTGCGTCGTCTTCCTAGACAATAACTGA
TAAGTGTTGTTGCGCGCTATTGTTGCTAAATATACGTATTTTAATGTTGG
CATTCCAAAAAACGTAATTGTAATCTAGTTGTCTATGTTTTTATATGTGT
GTATTGTATATGTGCGTTTATTTATTTTAAGCGGCGATTGTGCAAATATA
AGATAGTAAACCACAAATTTGGAGTATTATAAGAAATATATAACGAATTT
TAAGAAAAAAAAAAAAAAAA

RE35942.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:36:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG18549-RA 2286 CG18549-RA 219..2226 1..2008 10040 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 19:47:40
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 8280797..8281744 1057..2004 4740 100 Plus
chr3R 27901430 chr3R 8280274..8280732 601..1059 2295 100 Plus
chr3R 27901430 chr3R 8274674..8275103 1..430 2135 99.8 Plus
chr3R 27901430 chr3R 8280031..8280202 429..600 860 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:52:13 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 19:47:38
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12455408..12456359 1057..2008 4760 100 Plus
3R 32079331 3R 12454885..12455343 601..1059 2295 100 Plus
3R 32079331 3R 12449296..12449725 1..430 2150 100 Plus
3R 32079331 3R 12454642..12454813 429..600 860 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:03:48
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 12196239..12197190 1057..2008 4760 100 Plus
3R 31820162 3R 12195716..12196174 601..1059 2295 100 Plus
3R 31820162 3R 12190127..12190556 1..430 2150 100 Plus
3R 31820162 3R 12195473..12195644 429..600 860 100 Plus
Blast to na_te.dros performed 2019-03-15 19:47:38
Subject Length Description Subject Range Query Range Score Percent Strand
accord2 7650 accord2 QBERT 7650bp 6208..6323 36..148 130 61.5 Plus
Dvir\Tv1 6868 Dvir\Tv1 6868bp Derived from AF056940 (Rel. 62, Last updated, Version 4). 40..93 148..97 120 74.1 Minus
Dvir\Tv1 6868 Dvir\Tv1 6868bp Derived from AF056940 (Rel. 62, Last updated, Version 4). 6455..6508 148..97 120 74.1 Minus
Idefix 7411 Idefix DME9736 7411bp Derived from AJ009736 (e1371475) (Rel. 58, Last updated, Version 1). 6225..6342 178..62 120 62.9 Minus

RE35942.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 19:48:48 Download gff for RE35942.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 8274674..8275103 1..430 99 -> Plus
chr3R 8280033..8280202 431..600 100 -> Plus
chr3R 8280274..8280731 601..1058 100 -> Plus
chr3R 8280799..8281744 1059..2004 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:12:22 Download gff for RE35942.complete
Subject Subject Range Query Range Percent Splice Strand
CG18549-RA 1..1311 344..1654 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:59:09 Download gff for RE35942.complete
Subject Subject Range Query Range Percent Splice Strand
CG18549-RA 1..1311 344..1654 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:57:57 Download gff for RE35942.complete
Subject Subject Range Query Range Percent Splice Strand
CG18549-RA 1..1311 344..1654 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:23:53 Download gff for RE35942.complete
Subject Subject Range Query Range Percent Splice Strand
CG18549-RA 1..1311 344..1654 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:24:03 Download gff for RE35942.complete
Subject Subject Range Query Range Percent Splice Strand
CG18549-RA 1..1311 344..1654 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:24:35 Download gff for RE35942.complete
Subject Subject Range Query Range Percent Splice Strand
CG18549-RA 1..2004 1..2004 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:59:08 Download gff for RE35942.complete
Subject Subject Range Query Range Percent Splice Strand
CG18549-RA 1..2004 1..2004 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:57:57 Download gff for RE35942.complete
Subject Subject Range Query Range Percent Splice Strand
CG18549-RA 1..2004 1..2004 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:23:53 Download gff for RE35942.complete
Subject Subject Range Query Range Percent Splice Strand
CG18549-RA 1..2004 1..2004 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:24:03 Download gff for RE35942.complete
Subject Subject Range Query Range Percent Splice Strand
CG18549-RA 1..2004 1..2004 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:48:48 Download gff for RE35942.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12454644..12454813 431..600 100 -> Plus
3R 12449296..12449725 1..430 100 -> Plus
3R 12454885..12455342 601..1058 100 -> Plus
3R 12455410..12456355 1059..2004 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:48:48 Download gff for RE35942.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12454644..12454813 431..600 100 -> Plus
3R 12449296..12449725 1..430 100 -> Plus
3R 12454885..12455342 601..1058 100 -> Plus
3R 12455410..12456355 1059..2004 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:48:48 Download gff for RE35942.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12454644..12454813 431..600 100 -> Plus
3R 12449296..12449725 1..430 100 -> Plus
3R 12454885..12455342 601..1058 100 -> Plus
3R 12455410..12456355 1059..2004 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:57:57 Download gff for RE35942.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8275018..8275447 1..430 100 -> Plus
arm_3R 8280366..8280535 431..600 100 -> Plus
arm_3R 8280607..8281064 601..1058 100 -> Plus
arm_3R 8281132..8282077 1059..2004 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:59:00 Download gff for RE35942.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12190127..12190556 1..430 100 -> Plus
3R 12195475..12195644 431..600 100 -> Plus
3R 12195716..12196173 601..1058 100 -> Plus
3R 12196241..12197186 1059..2004 100   Plus

RE35942.hyp Sequence

Translation from 343 to 1653

> RE35942.hyp
MDFKFLMILILGFGFMFVFTAFQTMCNIEKTILDSISQEDDTFKGEGYTS
LAIIYLFFSLSNWLAPSFISFTGPRVAMVVGALTYTAFMITFMFPSTVLL
YVGSAVLGLGASITWTGQGTYLARCSESSTISRNSGVFWALLQCSMFIGN
LFVYYQFQDKTRIDKETRNLVIGVLTVIAVLGIVFLAALRFMADNAEHDN
ELEQKHTGCGQAIYALKSAGQLFLTKKMLLLSLAFFYTGLELSFFSGVFG
SAIGFTTKIAETPKEIVGLVGICIGAGEVFGGGLFGILGNKTTRYGRDPI
VIAGYVMHMAAFFMTFINLPNSAPFKDTTDISYLDPPRASIALVCAFLLG
LGDACFNTQIYSMLGGEYVNNAVGAFALFKFTQSVAAAISFFYSSHFGLY
VQLGILVVMGTIGTIAFVFVEWGFKRQHREQEALEK*

RE35942.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:46:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG18549-PA 436 CG18549-PA 1..436 1..436 2235 100 Plus
CG4928-PB 538 CG4928-PB 46..490 8..436 213 22.9 Plus
CG4928-PA 538 CG4928-PA 46..490 8..436 213 22.9 Plus

RE35942.pep Sequence

Translation from 343 to 1653

> RE35942.pep
MDFKFLMILILGFGFMFVFTAFQTMCNIEKTILDSISQEDDTFKGEGYTS
LAIIYLFFSLSNWLAPSFISFTGPRVAMVVGALTYTAFMITFMFPSTVLL
YVGSAVLGLGASITWTGQGTYLARCSESSTISRNSGVFWALLQCSMFIGN
LFVYYQFQDKTRIDKETRNLVIGVLTVIAVLGIVFLAALRFMADNAEHDN
ELEQKHTGCGQAIYALKSAGQLFLTKKMLLLSLAFFYTGLELSFFSGVFG
SAIGFTTKIAETPKEIVGLVGICIGAGEVFGGGLFGILGNKTTRYGRDPI
VIAGYVMHMAAFFMTFINLPNSAPFKDTTDISYLDPPRASIALVCAFLLG
LGDACFNTQIYSMLGGEYVNNAVGAFALFKFTQSVAAAISFFYSSHFGLY
VQLGILVVMGTIGTIAFVFVEWGFKRQHREQEALEK*

RE35942.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 03:08:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17962-PA 436 GF17962-PA 1..436 1..436 2218 96.8 Plus
Dana\GF12591-PA 517 GF12591-PA 67..514 8..434 171 21.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 03:08:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18971-PA 436 GG18971-PA 1..436 1..436 2267 99.1 Plus
Dere\GG19090-PA 538 GG19090-PA 46..475 8..421 171 22.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 03:08:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21251-PA 433 GH21251-PA 1..432 1..432 1957 87.3 Plus
Dgri\GH24749-PA 539 GH24749-PA 46..475 8..421 172 22.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:16:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG18549-PA 436 CG18549-PA 1..436 1..436 2235 100 Plus
CG4928-PB 538 CG4928-PB 46..490 8..436 213 22.9 Plus
CG4928-PA 538 CG4928-PA 46..490 8..436 213 22.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 03:08:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10488-PA 441 GI10488-PA 1..432 1..432 1977 87.5 Plus
Dmoj\GI15358-PA 540 GI15358-PA 46..475 8..421 175 22.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 03:08:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL27317-PA 258 GL27317-PA 1..258 1..258 1255 94.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 03:08:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA27031-PA 436 GA27031-PA 1..436 1..436 2116 95.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 03:08:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24039-PA 436 GM24039-PA 1..436 1..436 2282 100 Plus
Dsec\GM13477-PA 538 GM13477-PA 46..475 8..421 170 22.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 03:08:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18839-PA 436 GD18839-PA 1..436 1..436 2282 100 Plus
Dsim\GD17323-PA 538 GD17323-PA 46..475 8..421 170 22.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 03:08:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23168-PA 433 GJ23168-PA 1..432 1..432 1951 86.8 Plus
Dvir\GJ18836-PA 540 GJ18836-PA 46..475 8..421 177 23.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 03:08:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12824-PA 437 GK12824-PA 1..437 1..436 2113 94.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 03:08:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE26200-PA 436 GE26200-PA 1..436 1..436 2259 98.9 Plus
Dyak\GE17635-PA 538 GE17635-PA 46..475 8..421 171 22.9 Plus