BDGP Sequence Production Resources |
Search the DGRC for RE36040
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 360 |
Well: | 40 |
Vector: | pFlc-1 |
Associated Gene/Transcript | SelR-RH |
Protein status: | RE36040.pep: gold |
Preliminary Size: | 1023 |
Sequenced Size: | 1663 |
Gene | Date | Evidence |
---|---|---|
CG6584 | 2002-10-09 | Blastp of sequenced clone |
SelR | 2008-04-29 | Release 5.5 accounting |
SelR | 2008-08-15 | Release 5.9 accounting |
SelR | 2008-12-18 | 5.12 accounting |
1663 bp (1663 high quality bases) assembled on 2002-10-09
GenBank Submission: BT001621
> RE36040.complete ATTAGTTTTTAATTTTCCACCGCTGCGTAACATTGCGACGCACGCTTGTT TTCGCCCGCGTTTGGCGCATTCATAAACAAAAGGCCAAAAATAGAATCAG CACCATTTAGAGCGCTATTCAGCAGATTCACGCCAAGACAGCGACAATCC GGACAAAAGGTATTCCGGACCAGCAGCGACTATGGATAACAAGAGCGAGA AGGTTACGGTGAACAAGGAGGAGCTGCGCAAGCGCCTGACCCCGGTGCAG TATCAGGTTACCCAGGAGGCGGGCACCGAGCGACCCTTCACAGGTTGCTA CAACAAACACTACGAGAAGGGCGTGTACCAGTGCATCGTGTGCCACCAGG ATCTGTTCAGCTCGGAGACCAAGTACGACTCGGGATGCGGATGGCCGGCC TTCAACGATGTCCTAGACAAGGGCAAGGTCACGCTGCACCGCGATGCCAG CATACCAGGCATGGTGCGCACCGAGGTGCGCTGCTCCCGATGCTCCGCCC ATATGGGCCACGTCTTCGATGATGGACCGCCGCCCAAGCATCGACGCTTC TGCATCAATTCCGCGTCCATCGATTTCGTGAAGAGTGCGACGCCATCGAA GGCGGATCCATCGACGGCCTCGTCCAAGAAATAATGACCGATCTGCCTGC TAACCACAAGGAATACCATTACACCCGGAGGAGTAGCCCCATATAGACCA GCGGTAGATGCTACTCCGGGTCTATAGAGGGCTGCAGGTCCAGCAAAGAA AGATATTTAGCTATTTTATAGGCGTTTATTATGCAAAACTGTTTAACGAA CAAAAAAAAACATAGCTTATACACAAGAACGATGTTTGAAAATGTATTGC GGAACGAGGAGTGAGAGTTTAGTATTGTAGTTCAGCCCAGCAGATTCCAT TTGCTATATACTTTTCCTACTTTTACCCTATGTATGTTTCGGTTTCAAAT CTCTATCTCTATATTATAACTTTATAAAGTTTACGAAAGTTTTATGAACG GAAATGCGAGTCTACAGTTCCTGGCCTGGGTTTATGCACTCTTTTCGGTT TACAATCTCACTCACTGTGTAGATGAACTCTACTTCTCAAAAGTATCTCC CCTTGCATTCTCATCGTATCTATAGGATATGTATATTGTACGTTAATAAA AATTAACCCATTTTGTAGGAACTTACGTGCTTAGCAAGAAGTTAAGTTTT GCGCAAGGTTATCATTTATTTTGGGATAAGACGAGGGTTCCTTTAGTTAG TTTATATGTTTTTCTTTTCGGTTAAGTGCAATTTTCATACATATTTCGGT TTTGAATCTACATAGATCATTGAGCTTTTTCCACATACCATATTTCGATC ATTATACAAGGTCGATTGGATTTATTTTTGGGCCAGGGCCATTATGTGTA TGTCTGTGTGAATGTGGTGCTTTTATTTTAAAATATTATTTTCCGGTGCT GTATTTGGTTATTTGTATGATTTCGATTTACGTTTTAGTTTGTTGCTTTT TACTCACGCTCAATTTTCTTTTGATTTCAATAACATAACCCGAATACTTT AACCAACATTATATCCATAAACTATATAGAGTGTTTTAAACAATCCAAAT AATGTGTATTTTCGTATATTTTCTATTTCTCTTTTTTTAACTCGCTTCAA AAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
SelR-RH | 1757 | SelR-RH | 95..1757 | 1..1663 | 8300 | 99.9 | Plus |
SelR-RG | 1778 | SelR-RG | 572..1778 | 457..1663 | 6020 | 99.9 | Plus |
SelR-RG | 1778 | SelR-RG | 95..552 | 1..458 | 2290 | 100 | Plus |
SelR.b | 1531 | SelR.b | 560..897 | 122..459 | 1690 | 100 | Plus |
SelR.b | 1531 | SelR.b | 73..197 | 1..125 | 625 | 100 | Plus |
SelR.b | 1531 | SelR.b | 938..1000 | 467..529 | 165 | 84.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 6689975..6691166 | 1648..457 | 5960 | 100 | Minus |
chr3R | 27901430 | chr3R | 6692344..6692516 | 295..123 | 865 | 100 | Minus |
chr3R | 27901430 | chr3R | 6692065..6692235 | 459..289 | 855 | 100 | Minus |
chr3R | 27901430 | chr3R | 6693976..6694100 | 125..1 | 625 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 10864422..10865628 | 1663..457 | 6020 | 99.9 | Minus |
3R | 32079331 | 3R | 10866807..10866979 | 295..123 | 865 | 100 | Minus |
3R | 32079331 | 3R | 10866528..10866698 | 459..289 | 855 | 100 | Minus |
3R | 32079331 | 3R | 10868439..10868563 | 125..1 | 625 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 10605253..10606459 | 1663..457 | 6020 | 99.9 | Minus |
3R | 31820162 | 3R | 10607638..10607810 | 295..123 | 865 | 100 | Minus |
3R | 31820162 | 3R | 10607359..10607529 | 459..289 | 855 | 100 | Minus |
3R | 31820162 | 3R | 10609270..10609394 | 125..1 | 625 | 100 | Minus |
3R | 31820162 | 3R | 10604586..10604648 | 529..467 | 165 | 84.1 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
TAHRE | 10463 | TAHRE OSV 10463bp | 7688..7788 | 1529..1429 | 135 | 61.8 | Minus |
gypsy2 | 6841 | gypsy2 GYPSY2 6841bp | 867..950 | 1285..1209 | 125 | 65.5 | Minus |
Dvir\Tel | 2485 | Dvir\Tel 2485bp Derived from AF009439 (Rel. 66, Last updated, Version 3). | 288..350 | 1422..1362 | 112 | 66.7 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 6689975..6691164 | 459..1648 | 98 | <- | Minus |
chr3R | 6692066..6692230 | 294..458 | 100 | <- | Minus |
chr3R | 6692346..6692513 | 126..293 | 100 | <- | Minus |
chr3R | 6693976..6694100 | 1..125 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
SelR-RH | 1..453 | 182..634 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
SelR-RH | 1..453 | 182..634 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
SelR-RJ | 58..579 | 113..634 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
SelR-RH | 1..453 | 182..634 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
SelR-RJ | 58..579 | 113..634 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
SelR-RH | 95..1742 | 1..1648 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
SelR-RH | 95..1742 | 1..1648 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
SelR-RH | 80..1727 | 1..1648 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
SelR-RH | 95..1742 | 1..1648 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
SelR-RH | 80..1727 | 1..1648 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 10864437..10865626 | 459..1648 | 100 | <- | Minus |
3R | 10866529..10866693 | 294..458 | 100 | <- | Minus |
3R | 10866809..10866976 | 126..293 | 100 | <- | Minus |
3R | 10868439..10868563 | 1..125 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 10864437..10865626 | 459..1648 | 100 | <- | Minus |
3R | 10866529..10866693 | 294..458 | 100 | <- | Minus |
3R | 10866809..10866976 | 126..293 | 100 | <- | Minus |
3R | 10868439..10868563 | 1..125 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 10864437..10865626 | 459..1648 | 100 | <- | Minus |
3R | 10866529..10866693 | 294..458 | 100 | <- | Minus |
3R | 10866809..10866976 | 126..293 | 100 | <- | Minus |
3R | 10868439..10868563 | 1..125 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 6690159..6691348 | 459..1648 | 100 | <- | Minus |
arm_3R | 6692251..6692415 | 294..458 | 100 | <- | Minus |
arm_3R | 6692531..6692698 | 126..293 | 100 | <- | Minus |
arm_3R | 6694161..6694285 | 1..125 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 10605268..10606457 | 459..1648 | 100 | <- | Minus |
3R | 10607360..10607524 | 294..458 | 100 | <- | Minus |
3R | 10607640..10607807 | 126..293 | 100 | <- | Minus |
3R | 10609270..10609394 | 1..125 | 100 | Minus |
Translation from 181 to 633
> RE36040.pep MDNKSEKVTVNKEELRKRLTPVQYQVTQEAGTERPFTGCYNKHYEKGVYQ CIVCHQDLFSSETKYDSGCGWPAFNDVLDKGKVTLHRDASIPGMVRTEVR CSRCSAHMGHVFDDGPPPKHRRFCINSASIDFVKSATPSKADPSTASSKK *
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF16176-PA | 251 | GF16176-PA | 42..175 | 1..134 | 733 | 97.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG17257-PA | 238 | GG17257-PA | 42..175 | 1..134 | 739 | 99.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH18739-PA | 200 | GH18739-PA | 1..134 | 1..134 | 719 | 95.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
SelR-PH | 150 | CG6584-PH | 1..150 | 1..150 | 817 | 100 | Plus |
SelR-PJ | 192 | CG6584-PJ | 43..192 | 1..150 | 817 | 100 | Plus |
SelR-PG | 157 | CG6584-PG | 1..157 | 1..150 | 799 | 95.5 | Plus |
SelR-PI | 155 | CG6584-PI | 1..141 | 1..147 | 689 | 85.7 | Plus |
SelR-PA | 155 | CG6584-PA | 1..141 | 1..147 | 689 | 85.7 | Plus |
SelR-PC | 197 | CG6584-PC | 43..183 | 1..147 | 689 | 85.7 | Plus |
SelR-PB | 166 | CG6584-PB | 1..152 | 1..147 | 675 | 80.4 | Plus |
SelR-PE | 208 | CG6584-PE | 43..194 | 1..147 | 675 | 80.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI24656-PA | 211 | GI24656-PA | 1..134 | 1..134 | 720 | 95.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL12062-PA | 205 | GL12062-PA | 1..141 | 1..134 | 693 | 90.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA19702-PF | 148 | GA19702-PF | 1..148 | 1..149 | 734 | 89.9 | Plus |
Dpse\GA19702-PD | 156 | GA19702-PD | 1..135 | 1..135 | 659 | 85.9 | Plus |
Dpse\GA19702-PE | 203 | GA19702-PE | 37..182 | 1..135 | 650 | 80.1 | Plus |
Dpse\GA19702-PB | 167 | GA19702-PB | 1..146 | 1..135 | 645 | 80.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM26142-PA | 250 | GM26142-PA | 43..176 | 1..134 | 736 | 98.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD20695-PA | 251 | GD20695-PA | 43..177 | 1..134 | 714 | 97 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ24030-PA | 200 | GJ24030-PA | 1..134 | 1..134 | 725 | 96.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK13287-PA | 209 | GK13287-PA | 1..136 | 1..136 | 722 | 95.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE24659-PA | 252 | GE24659-PA | 45..178 | 1..134 | 737 | 98.5 | Plus |
Translation from 181 to 633
> RE36040.hyp MDNKSEKVTVNKEELRKRLTPVQYQVTQEAGTERPFTGCYNKHYEKGVYQ CIVCHQDLFSSETKYDSGCGWPAFNDVLDKGKVTLHRDASIPGMVRTEVR CSRCSAHMGHVFDDGPPPKHRRFCINSASIDFVKSATPSKADPSTASSKK *
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
SelR-PH | 150 | CG6584-PH | 1..150 | 1..150 | 817 | 100 | Plus |
SelR-PJ | 192 | CG6584-PJ | 43..192 | 1..150 | 817 | 100 | Plus |
SelR-PG | 157 | CG6584-PG | 1..157 | 1..150 | 799 | 95.5 | Plus |
SelR-PI | 155 | CG6584-PI | 1..141 | 1..147 | 689 | 85.7 | Plus |
SelR-PA | 155 | CG6584-PA | 1..141 | 1..147 | 689 | 85.7 | Plus |