Clone RE36040 Report

Search the DGRC for RE36040

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:360
Well:40
Vector:pFlc-1
Associated Gene/TranscriptSelR-RH
Protein status:RE36040.pep: gold
Preliminary Size:1023
Sequenced Size:1663

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6584 2002-10-09 Blastp of sequenced clone
SelR 2008-04-29 Release 5.5 accounting
SelR 2008-08-15 Release 5.9 accounting
SelR 2008-12-18 5.12 accounting

Clone Sequence Records

RE36040.complete Sequence

1663 bp (1663 high quality bases) assembled on 2002-10-09

GenBank Submission: BT001621

> RE36040.complete
ATTAGTTTTTAATTTTCCACCGCTGCGTAACATTGCGACGCACGCTTGTT
TTCGCCCGCGTTTGGCGCATTCATAAACAAAAGGCCAAAAATAGAATCAG
CACCATTTAGAGCGCTATTCAGCAGATTCACGCCAAGACAGCGACAATCC
GGACAAAAGGTATTCCGGACCAGCAGCGACTATGGATAACAAGAGCGAGA
AGGTTACGGTGAACAAGGAGGAGCTGCGCAAGCGCCTGACCCCGGTGCAG
TATCAGGTTACCCAGGAGGCGGGCACCGAGCGACCCTTCACAGGTTGCTA
CAACAAACACTACGAGAAGGGCGTGTACCAGTGCATCGTGTGCCACCAGG
ATCTGTTCAGCTCGGAGACCAAGTACGACTCGGGATGCGGATGGCCGGCC
TTCAACGATGTCCTAGACAAGGGCAAGGTCACGCTGCACCGCGATGCCAG
CATACCAGGCATGGTGCGCACCGAGGTGCGCTGCTCCCGATGCTCCGCCC
ATATGGGCCACGTCTTCGATGATGGACCGCCGCCCAAGCATCGACGCTTC
TGCATCAATTCCGCGTCCATCGATTTCGTGAAGAGTGCGACGCCATCGAA
GGCGGATCCATCGACGGCCTCGTCCAAGAAATAATGACCGATCTGCCTGC
TAACCACAAGGAATACCATTACACCCGGAGGAGTAGCCCCATATAGACCA
GCGGTAGATGCTACTCCGGGTCTATAGAGGGCTGCAGGTCCAGCAAAGAA
AGATATTTAGCTATTTTATAGGCGTTTATTATGCAAAACTGTTTAACGAA
CAAAAAAAAACATAGCTTATACACAAGAACGATGTTTGAAAATGTATTGC
GGAACGAGGAGTGAGAGTTTAGTATTGTAGTTCAGCCCAGCAGATTCCAT
TTGCTATATACTTTTCCTACTTTTACCCTATGTATGTTTCGGTTTCAAAT
CTCTATCTCTATATTATAACTTTATAAAGTTTACGAAAGTTTTATGAACG
GAAATGCGAGTCTACAGTTCCTGGCCTGGGTTTATGCACTCTTTTCGGTT
TACAATCTCACTCACTGTGTAGATGAACTCTACTTCTCAAAAGTATCTCC
CCTTGCATTCTCATCGTATCTATAGGATATGTATATTGTACGTTAATAAA
AATTAACCCATTTTGTAGGAACTTACGTGCTTAGCAAGAAGTTAAGTTTT
GCGCAAGGTTATCATTTATTTTGGGATAAGACGAGGGTTCCTTTAGTTAG
TTTATATGTTTTTCTTTTCGGTTAAGTGCAATTTTCATACATATTTCGGT
TTTGAATCTACATAGATCATTGAGCTTTTTCCACATACCATATTTCGATC
ATTATACAAGGTCGATTGGATTTATTTTTGGGCCAGGGCCATTATGTGTA
TGTCTGTGTGAATGTGGTGCTTTTATTTTAAAATATTATTTTCCGGTGCT
GTATTTGGTTATTTGTATGATTTCGATTTACGTTTTAGTTTGTTGCTTTT
TACTCACGCTCAATTTTCTTTTGATTTCAATAACATAACCCGAATACTTT
AACCAACATTATATCCATAAACTATATAGAGTGTTTTAAACAATCCAAAT
AATGTGTATTTTCGTATATTTTCTATTTCTCTTTTTTTAACTCGCTTCAA
AAAAAAAAAAAAA

RE36040.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:40:08
Subject Length Description Subject Range Query Range Score Percent Strand
SelR-RH 1757 SelR-RH 95..1757 1..1663 8300 99.9 Plus
SelR-RG 1778 SelR-RG 572..1778 457..1663 6020 99.9 Plus
SelR-RG 1778 SelR-RG 95..552 1..458 2290 100 Plus
SelR.b 1531 SelR.b 560..897 122..459 1690 100 Plus
SelR.b 1531 SelR.b 73..197 1..125 625 100 Plus
SelR.b 1531 SelR.b 938..1000 467..529 165 84.1 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 19:47:49
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 6689975..6691166 1648..457 5960 100 Minus
chr3R 27901430 chr3R 6692344..6692516 295..123 865 100 Minus
chr3R 27901430 chr3R 6692065..6692235 459..289 855 100 Minus
chr3R 27901430 chr3R 6693976..6694100 125..1 625 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:52:15 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 19:47:47
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10864422..10865628 1663..457 6020 99.9 Minus
3R 32079331 3R 10866807..10866979 295..123 865 100 Minus
3R 32079331 3R 10866528..10866698 459..289 855 100 Minus
3R 32079331 3R 10868439..10868563 125..1 625 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:13:40
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 10605253..10606459 1663..457 6020 99.9 Minus
3R 31820162 3R 10607638..10607810 295..123 865 100 Minus
3R 31820162 3R 10607359..10607529 459..289 855 100 Minus
3R 31820162 3R 10609270..10609394 125..1 625 100 Minus
3R 31820162 3R 10604586..10604648 529..467 165 84.1 Minus
Blast to na_te.dros performed 2019-03-15 19:47:47
Subject Length Description Subject Range Query Range Score Percent Strand
TAHRE 10463 TAHRE OSV 10463bp 7688..7788 1529..1429 135 61.8 Minus
gypsy2 6841 gypsy2 GYPSY2 6841bp 867..950 1285..1209 125 65.5 Minus
Dvir\Tel 2485 Dvir\Tel 2485bp Derived from AF009439 (Rel. 66, Last updated, Version 3). 288..350 1422..1362 112 66.7 Minus

RE36040.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 19:48:53 Download gff for RE36040.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 6689975..6691164 459..1648 98 <- Minus
chr3R 6692066..6692230 294..458 100 <- Minus
chr3R 6692346..6692513 126..293 100 <- Minus
chr3R 6693976..6694100 1..125 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:12:25 Download gff for RE36040.complete
Subject Subject Range Query Range Percent Splice Strand
SelR-RH 1..453 182..634 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:12:28 Download gff for RE36040.complete
Subject Subject Range Query Range Percent Splice Strand
SelR-RH 1..453 182..634 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:58:04 Download gff for RE36040.complete
Subject Subject Range Query Range Percent Splice Strand
SelR-RJ 58..579 113..634 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:03:20 Download gff for RE36040.complete
Subject Subject Range Query Range Percent Splice Strand
SelR-RH 1..453 182..634 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:24:09 Download gff for RE36040.complete
Subject Subject Range Query Range Percent Splice Strand
SelR-RJ 58..579 113..634 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:34:43 Download gff for RE36040.complete
Subject Subject Range Query Range Percent Splice Strand
SelR-RH 95..1742 1..1648 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:12:27 Download gff for RE36040.complete
Subject Subject Range Query Range Percent Splice Strand
SelR-RH 95..1742 1..1648 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:58:04 Download gff for RE36040.complete
Subject Subject Range Query Range Percent Splice Strand
SelR-RH 80..1727 1..1648 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:03:20 Download gff for RE36040.complete
Subject Subject Range Query Range Percent Splice Strand
SelR-RH 95..1742 1..1648 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:24:09 Download gff for RE36040.complete
Subject Subject Range Query Range Percent Splice Strand
SelR-RH 80..1727 1..1648 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:48:53 Download gff for RE36040.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10864437..10865626 459..1648 100 <- Minus
3R 10866529..10866693 294..458 100 <- Minus
3R 10866809..10866976 126..293 100 <- Minus
3R 10868439..10868563 1..125 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:48:53 Download gff for RE36040.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10864437..10865626 459..1648 100 <- Minus
3R 10866529..10866693 294..458 100 <- Minus
3R 10866809..10866976 126..293 100 <- Minus
3R 10868439..10868563 1..125 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:48:53 Download gff for RE36040.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10864437..10865626 459..1648 100 <- Minus
3R 10866529..10866693 294..458 100 <- Minus
3R 10866809..10866976 126..293 100 <- Minus
3R 10868439..10868563 1..125 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:58:04 Download gff for RE36040.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6690159..6691348 459..1648 100 <- Minus
arm_3R 6692251..6692415 294..458 100 <- Minus
arm_3R 6692531..6692698 126..293 100 <- Minus
arm_3R 6694161..6694285 1..125 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:35:05 Download gff for RE36040.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10605268..10606457 459..1648 100 <- Minus
3R 10607360..10607524 294..458 100 <- Minus
3R 10607640..10607807 126..293 100 <- Minus
3R 10609270..10609394 1..125 100   Minus

RE36040.pep Sequence

Translation from 181 to 633

> RE36040.pep
MDNKSEKVTVNKEELRKRLTPVQYQVTQEAGTERPFTGCYNKHYEKGVYQ
CIVCHQDLFSSETKYDSGCGWPAFNDVLDKGKVTLHRDASIPGMVRTEVR
CSRCSAHMGHVFDDGPPPKHRRFCINSASIDFVKSATPSKADPSTASSKK
*

RE36040.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 03:25:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16176-PA 251 GF16176-PA 42..175 1..134 733 97.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 03:25:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17257-PA 238 GG17257-PA 42..175 1..134 739 99.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 03:25:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18739-PA 200 GH18739-PA 1..134 1..134 719 95.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:44:33
Subject Length Description Subject Range Query Range Score Percent Strand
SelR-PH 150 CG6584-PH 1..150 1..150 817 100 Plus
SelR-PJ 192 CG6584-PJ 43..192 1..150 817 100 Plus
SelR-PG 157 CG6584-PG 1..157 1..150 799 95.5 Plus
SelR-PI 155 CG6584-PI 1..141 1..147 689 85.7 Plus
SelR-PA 155 CG6584-PA 1..141 1..147 689 85.7 Plus
SelR-PC 197 CG6584-PC 43..183 1..147 689 85.7 Plus
SelR-PB 166 CG6584-PB 1..152 1..147 675 80.4 Plus
SelR-PE 208 CG6584-PE 43..194 1..147 675 80.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 03:25:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24656-PA 211 GI24656-PA 1..134 1..134 720 95.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 03:25:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12062-PA 205 GL12062-PA 1..141 1..134 693 90.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 03:25:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19702-PF 148 GA19702-PF 1..148 1..149 734 89.9 Plus
Dpse\GA19702-PD 156 GA19702-PD 1..135 1..135 659 85.9 Plus
Dpse\GA19702-PE 203 GA19702-PE 37..182 1..135 650 80.1 Plus
Dpse\GA19702-PB 167 GA19702-PB 1..146 1..135 645 80.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 03:25:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26142-PA 250 GM26142-PA 43..176 1..134 736 98.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 03:25:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20695-PA 251 GD20695-PA 43..177 1..134 714 97 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 03:25:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24030-PA 200 GJ24030-PA 1..134 1..134 725 96.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 03:25:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13287-PA 209 GK13287-PA 1..136 1..136 722 95.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 03:25:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24659-PA 252 GE24659-PA 45..178 1..134 737 98.5 Plus

RE36040.hyp Sequence

Translation from 181 to 633

> RE36040.hyp
MDNKSEKVTVNKEELRKRLTPVQYQVTQEAGTERPFTGCYNKHYEKGVYQ
CIVCHQDLFSSETKYDSGCGWPAFNDVLDKGKVTLHRDASIPGMVRTEVR
CSRCSAHMGHVFDDGPPPKHRRFCINSASIDFVKSATPSKADPSTASSKK
*

RE36040.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:28:14
Subject Length Description Subject Range Query Range Score Percent Strand
SelR-PH 150 CG6584-PH 1..150 1..150 817 100 Plus
SelR-PJ 192 CG6584-PJ 43..192 1..150 817 100 Plus
SelR-PG 157 CG6584-PG 1..157 1..150 799 95.5 Plus
SelR-PI 155 CG6584-PI 1..141 1..147 689 85.7 Plus
SelR-PA 155 CG6584-PA 1..141 1..147 689 85.7 Plus