Clone RE36115 Report

Search the DGRC for RE36115

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:361
Well:15
Vector:pFlc-1
Associated Gene/TranscriptCG15701-RA
Protein status:RE36115.pep: gold
Preliminary Size:3156
Sequenced Size:3354

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG15701 2002-01-01 Sim4 clustering to Release 2
CG15701 2002-12-10 Blastp of sequenced clone
CG15701 2003-01-01 Sim4 clustering to Release 3
CG15701 2008-04-29 Release 5.5 accounting
CG15701 2008-08-15 Release 5.9 accounting
CG15701 2008-12-18 5.12 accounting

Clone Sequence Records

RE36115.complete Sequence

3354 bp (3354 high quality bases) assembled on 2002-12-10

GenBank Submission: BT003203

> RE36115.complete
AGGATTGATTAAATTTACGTGGCATACGGCATTTACTTCTATTAATTCGC
AGCTTAATTAAGCACTTTAAACAGCATTTATTCCTTCTAAAATGTCAAAA
AATGCGGGGCGAACCAGCAGCAAAAACGTCAAAACGGAAGTGCCAAGGAA
GGTCACTAAATCACCAGCAACAAGTGGACCGGCCACCACAAGGGAATCGA
AGGAGCGGAGGTCACTGGCCAAACAACCGGATAGCTTGGAAGGTGAAAAA
ATTGCGAGGAAAACCACAACAGCAGCGCAACCTACGACCGCCAGCAAAAA
GCCATTAGCCACGGGGAAAAACAAGGAAAGGGAGTCCTTGAGCAAGAGGA
CCACTCCGTCCCCAGGTGCATTGCGTGCCACCACCAGACACACAACCACG
ACCACAAACCCACCCCTGCAGTCCAAGACCACCAAGACCACGAAGCTCGT
GGCCAAATCGAAGCCCAATGCAGTTCTGGACACGTATCACAGTGTTACGG
TCGCCTCGCCACCGCAAAAGCGCAGAGGACAGGCGGAGCAGGAGAAGGAA
TCGCCCACGCCTTCATCAAAAGAATATTCCCCTGTTGCACAGACTCAAAA
GGAGCACAAGCCACAGTCTCCTTCCAAGGGAGATGCTCGTATTGTTCCGG
CAAGATCCAGAACTTATACACGCACCTTGGATCCCGAGGAAGTGGTTATC
CTTAAGCGTGAATCCGCCAAGCAAAGAAGCGAAGTGGAGGCCAAGGAATC
AGAGCCTGTGAAACAGCCAGTGGCCTTTGAAGTCAAATTCGATGAAGCCA
AAAAGCCAGAACCGGAATCCGATCACTACTCCGATGACTTCGAATCCTAT
GAATCGGATTTCGAAACCGATGCCAGCACGCCCGACGAGGTGGAATCCGA
TGAAGCGCAGGAGCCCTCATCCTCCGAGGCGGAAGTGGAGGAGGAGCGGG
AGGAAGAGGATTCGGAGCCCACCCAAAATCCCATCACTGTGATCCAACGC
GACAAGGATCAAGAGCGGAAATTGGACTCCGGTCATTATGACATGCATTT
GCGCAGGAATCCCTTGAGCAGTCTGTCCACGCAGAATCAGTATGATAGCT
TTGATACCAACTCGATGGCCAACTCAGAGCAACTGGACTCGGGCATTAGC
ACCACTGGCGTGGAGAAGCCCCGGAGTGGAGAGGCTAACGTGTACTATGG
TGGCTACTCGGGATTCGTTTCCCATCCCGTGATCAGTCGTCGCGGCGAAG
AGCTAATGGCCAAATTGCGTTTCGATCAACTGAACTACCACCTGTTCGAG
ATGAAGCCCCTCAGCTACGAGGGATTCATGCAGAGCTATGGGAAGCTGAA
TGCCAGTCAAGTGGCCACACAGACGCAGTCACCACACATGGACGGCGAGT
GCCAGACGCTGGAGGTGCACAGTCGTAGCAGCTGGACCCAACATCCACCC
CACTATGGTGGGCAATTCGTTCTCAGCTGCAGTGTCGATGCGGAGTTGGA
TGAAACATGGAGCAAGCAACCTGCAGATGAATACGAAGCTAGCATTTCTC
GATTGGAGCAACTGCATCGCCTGGAGCAGGCACGCTCCCAGCAACTGCAG
CAAAAGAGATTGGCCAAGAGCACGGATCTGGAGCGACTGAATTCGTTTCT
TCACAGGGCCGGCAGACTTATGGGACTGGTTTTGGAGGGCAAAACCACGG
CCCACGGCCAGGGGAATAGTCCTCGAAATGTACCACTTCAGACGGGACTG
CTGAACGCACTGCCTGTGCGTCGAATCTTTGGAAGTGCCGGAAATGGACA
ACTGGTGGTCACCGTGCACGAGTGTCCTGCGGACAGCAATGTATATAAGG
AGGACTTTGCCAGCCTTCTGATGGTGTGGTCACTGGCCAATCCCAGCCAG
CCGTTGCGCCTGCTCTCCACCTGGGCGGAAGTCAGCCGTGTGGCACTATC
TGCGCAGGCCCAGGATATCGTGGTGGCCGGACTGAGAGATGGTAGTGTGG
CTATGTGGGATTTGCGCGAGACGCACAGCTACTGCTCCAAGTTGGATGGC
CACCTAACCCATTTTGCAGCCACACAATCGGTGGTTCCCATGCCGGAGCA
ACAGGACAAGGAGGTAAATGCCATGGATCTGGGCGCTGTGGTGGATGTGC
GCAGCTTTAGATCACACTTGAATGCTGGAGGAGTAGCTGCGACTAGTGGT
TTGCAGACGACGTACAAGGAAGTTCAGTACGCCTCGCTGAATGACTCCGG
CCTGCTGACCATGTGGACCCTGGTGGAGGGCGCCTCGTCCACCAACAGCA
ACGAGTTCAGTTCGCCGTGGGCGCGTGTGAAGCTACTGCAGAGTGGCAGC
TGTGATCTGAGGAGCTATCTGGAGCGACGCCTCCTGAAGAGCCATCAGAG
TGCGTACGAGAAGACCAAGTCCCTGTTCCAGGGCAACATCTACAGCGATG
ATGTGCTGCGTGAGCTGAATGACACGCAAACGCTGACCACGGCACTCCAG
GGACAGGGATTGCAGGGCCTGCGCTTCACCAGCATCGATACGGGCAGTGA
GCTCATCTATGTGTGCACCAACCGAAACTTTGTGCTCTGCTGCACGCGTA
GTTTGAAGACGGAACGCTTCGCGAGGATCGCCGTGAACGAAAGTCGTTTC
CTGTTTCCCACCTCGTTGTGTGTGCTCTCCAATGAGAACTATGTGGCCGT
GGGTCTGTCCAATGGATCTGTGATGATACTCAACTGCAATCAGCGACAGA
GGCAGCGCCAGAGGAATCAGCAGAGACCCAAAACAGGACTTCCGCCGGCC
ACGGATGAGCCCGATCCCGAGACGGGCAAATCGTGTGCCATTCAAAACAT
CATACTCAACGAGCGTAGATCATTTGACCAGCAGATGGATGACAATCCCA
CGTACGATGCCCGACCCAACACAGCTCTGGAGCTGATTGAGCGACCCAGG
CGTTCCTACGAAATGAGGGTCTTTGACCAGCAGCTGCTCCTAAGTGGCAG
CGGTCTGCGCCAGCATCTCGTCCAGGCCCTGATCCTCTCCAGCGACGGCT
GGCAGCTTTCCGCCCTCACCAATGGCACTGTGCGTCACTACGATTTCTAT
CGCGACAGAGAGTTACCCGTGGAGGAGCTCATGGACACACGCCTCAAGGT
GACGGACATTGCCGGTGCTCGAAGTTGTGGACAGGAACAGGTTCTGCTCA
TCCTGGACTCGACTGGAAAGGTGCAGTCGCGCACTCTGGACTACTAGCTT
GTTAAATATTTTCTAATTATTTGTATGCGTTTGTTGAAATCATTTTTTAA
AATGAAGTAAACTCGAACTAGTCCTACTCACTTTTAATCAAAAAAAAAAA
AAAA

RE36115.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:30:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG15701-RA 3347 CG15701-RA 3..3341 3..3341 16680 99.9 Plus
CG15706-RA 2548 CG15706-RA 340..466 129..3 635 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 05:33:08
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 12118100..12120199 128..2227 10500 100 Plus
chr2R 21145070 chr2R 12120286..12121400 2225..3339 5560 99.9 Plus
chr2R 21145070 chr2R 12117541..12117667 3..129 635 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:52:17 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 05:33:05
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16230778..16232877 128..2227 10500 100 Plus
2R 25286936 2R 16232964..16234080 2225..3341 5570 99.9 Plus
2R 25286936 2R 16230219..16230345 3..129 635 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:06:25
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 16231977..16234076 128..2227 10500 100 Plus
2R 25260384 2R 16234163..16235279 2225..3341 5570 99.9 Plus
2R 25260384 2R 16231418..16231544 3..129 635 100 Plus
Blast to na_te.dros performed 2019-03-16 05:33:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 750..816 966..1030 132 68.7 Plus

RE36115.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 05:34:07 Download gff for RE36115.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 12117539..12117665 1..127 99 -> Plus
chr2R 12118100..12120199 128..2227 100 -> Plus
chr2R 12120289..12121400 2228..3339 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:12:27 Download gff for RE36115.complete
Subject Subject Range Query Range Percent Splice Strand
CG15701-RA 1..3156 92..3247 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:01:17 Download gff for RE36115.complete
Subject Subject Range Query Range Percent Splice Strand
CG15701-RA 1..3156 92..3247 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 08:28:01 Download gff for RE36115.complete
Subject Subject Range Query Range Percent Splice Strand
CG15701-RA 1..3156 92..3247 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:51:42 Download gff for RE36115.complete
Subject Subject Range Query Range Percent Splice Strand
CG15701-RA 1..3156 92..3247 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:05:18 Download gff for RE36115.complete
Subject Subject Range Query Range Percent Splice Strand
CG15701-RA 1..3156 92..3247 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:18:55 Download gff for RE36115.complete
Subject Subject Range Query Range Percent Splice Strand
CG15701-RA 1..3339 1..3339 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:01:17 Download gff for RE36115.complete
Subject Subject Range Query Range Percent Splice Strand
CG15701-RA 1..3339 1..3339 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:28:01 Download gff for RE36115.complete
Subject Subject Range Query Range Percent Splice Strand
CG15701-RA 20..3358 1..3339 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:51:42 Download gff for RE36115.complete
Subject Subject Range Query Range Percent Splice Strand
CG15701-RA 1..3339 1..3339 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:05:18 Download gff for RE36115.complete
Subject Subject Range Query Range Percent Splice Strand
CG15701-RA 20..3358 1..3339 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:34:07 Download gff for RE36115.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16230778..16232877 128..2227 100 -> Plus
2R 16230217..16230343 1..127 99 -> Plus
2R 16232967..16234078 2228..3339 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:34:07 Download gff for RE36115.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16230778..16232877 128..2227 100 -> Plus
2R 16230217..16230343 1..127 99 -> Plus
2R 16232967..16234078 2228..3339 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:34:07 Download gff for RE36115.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16230778..16232877 128..2227 100 -> Plus
2R 16230217..16230343 1..127 99 -> Plus
2R 16232967..16234078 2228..3339 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:28:01 Download gff for RE36115.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12117722..12117848 1..127 99 -> Plus
arm_2R 12118283..12120382 128..2227 100 -> Plus
arm_2R 12120472..12121583 2228..3339 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:23:38 Download gff for RE36115.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16231977..16234076 128..2227 100 -> Plus
2R 16234166..16235277 2228..3339 99   Plus
2R 16231416..16231542 1..127 99 -> Plus

RE36115.pep Sequence

Translation from 91 to 3246

> RE36115.pep
MSKNAGRTSSKNVKTEVPRKVTKSPATSGPATTRESKERRSLAKQPDSLE
GEKIARKTTTAAQPTTASKKPLATGKNKERESLSKRTTPSPGALRATTRH
TTTTTNPPLQSKTTKTTKLVAKSKPNAVLDTYHSVTVASPPQKRRGQAEQ
EKESPTPSSKEYSPVAQTQKEHKPQSPSKGDARIVPARSRTYTRTLDPEE
VVILKRESAKQRSEVEAKESEPVKQPVAFEVKFDEAKKPEPESDHYSDDF
ESYESDFETDASTPDEVESDEAQEPSSSEAEVEEEREEEDSEPTQNPITV
IQRDKDQERKLDSGHYDMHLRRNPLSSLSTQNQYDSFDTNSMANSEQLDS
GISTTGVEKPRSGEANVYYGGYSGFVSHPVISRRGEELMAKLRFDQLNYH
LFEMKPLSYEGFMQSYGKLNASQVATQTQSPHMDGECQTLEVHSRSSWTQ
HPPHYGGQFVLSCSVDAELDETWSKQPADEYEASISRLEQLHRLEQARSQ
QLQQKRLAKSTDLERLNSFLHRAGRLMGLVLEGKTTAHGQGNSPRNVPLQ
TGLLNALPVRRIFGSAGNGQLVVTVHECPADSNVYKEDFASLLMVWSLAN
PSQPLRLLSTWAEVSRVALSAQAQDIVVAGLRDGSVAMWDLRETHSYCSK
LDGHLTHFAATQSVVPMPEQQDKEVNAMDLGAVVDVRSFRSHLNAGGVAA
TSGLQTTYKEVQYASLNDSGLLTMWTLVEGASSTNSNEFSSPWARVKLLQ
SGSCDLRSYLERRLLKSHQSAYEKTKSLFQGNIYSDDVLRELNDTQTLTT
ALQGQGLQGLRFTSIDTGSELIYVCTNRNFVLCCTRSLKTERFARIAVNE
SRFLFPTSLCVLSNENYVAVGLSNGSVMILNCNQRQRQRQRNQQRPKTGL
PPATDEPDPETGKSCAIQNIILNERRSFDQQMDDNPTYDARPNTALELIE
RPRRSYEMRVFDQQLLLSGSGLRQHLVQALILSSDGWQLSALTNGTVRHY
DFYRDRELPVEELMDTRLKVTDIAGARSCGQEQVLLILDSTGKVQSRTLD
Y*

RE36115.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 05:59:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12274-PA 1032 GF12274-PA 1..1032 1..1051 3834 72.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 05:59:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20583-PA 1054 GG20583-PA 1..1054 1..1051 4870 91.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 05:59:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20843-PA 1050 GH20843-PA 1..1049 1..1050 3039 60.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:35:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG15701-PA 1051 CG15701-PA 1..1051 1..1051 5395 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 05:59:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20948-PA 1068 GI20948-PA 1..1067 1..1050 2969 58.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 05:59:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17671-PA 1042 GL17671-PA 1..1041 1..1050 3528 67.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 05:59:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13899-PA 1042 GA13899-PA 1..1041 1..1050 3524 66.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 05:59:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21674-PA 1050 GM21674-PA 1..1050 1..1051 5052 95.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 05:59:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15432-PA 120 GD15432-PA 1..120 932..1051 600 94.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 05:59:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20670-PA 1048 GJ20670-PA 1..1047 1..1050 3063 60.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 05:59:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20629-PA 986 GK20629-PA 2..980 42..1045 2711 56.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 05:59:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE11769-PA 1052 GE11769-PA 1..1052 1..1051 4762 91.5 Plus

RE36115.hyp Sequence

Translation from 91 to 3246

> RE36115.hyp
MSKNAGRTSSKNVKTEVPRKVTKSPATSGPATTRESKERRSLAKQPDSLE
GEKIARKTTTAAQPTTASKKPLATGKNKERESLSKRTTPSPGALRATTRH
TTTTTNPPLQSKTTKTTKLVAKSKPNAVLDTYHSVTVASPPQKRRGQAEQ
EKESPTPSSKEYSPVAQTQKEHKPQSPSKGDARIVPARSRTYTRTLDPEE
VVILKRESAKQRSEVEAKESEPVKQPVAFEVKFDEAKKPEPESDHYSDDF
ESYESDFETDASTPDEVESDEAQEPSSSEAEVEEEREEEDSEPTQNPITV
IQRDKDQERKLDSGHYDMHLRRNPLSSLSTQNQYDSFDTNSMANSEQLDS
GISTTGVEKPRSGEANVYYGGYSGFVSHPVISRRGEELMAKLRFDQLNYH
LFEMKPLSYEGFMQSYGKLNASQVATQTQSPHMDGECQTLEVHSRSSWTQ
HPPHYGGQFVLSCSVDAELDETWSKQPADEYEASISRLEQLHRLEQARSQ
QLQQKRLAKSTDLERLNSFLHRAGRLMGLVLEGKTTAHGQGNSPRNVPLQ
TGLLNALPVRRIFGSAGNGQLVVTVHECPADSNVYKEDFASLLMVWSLAN
PSQPLRLLSTWAEVSRVALSAQAQDIVVAGLRDGSVAMWDLRETHSYCSK
LDGHLTHFAATQSVVPMPEQQDKEVNAMDLGAVVDVRSFRSHLNAGGVAA
TSGLQTTYKEVQYASLNDSGLLTMWTLVEGASSTNSNEFSSPWARVKLLQ
SGSCDLRSYLERRLLKSHQSAYEKTKSLFQGNIYSDDVLRELNDTQTLTT
ALQGQGLQGLRFTSIDTGSELIYVCTNRNFVLCCTRSLKTERFARIAVNE
SRFLFPTSLCVLSNENYVAVGLSNGSVMILNCNQRQRQRQRNQQRPKTGL
PPATDEPDPETGKSCAIQNIILNERRSFDQQMDDNPTYDARPNTALELIE
RPRRSYEMRVFDQQLLLSGSGLRQHLVQALILSSDGWQLSALTNGTVRHY
DFYRDRELPVEELMDTRLKVTDIAGARSCGQEQVLLILDSTGKVQSRTLD
Y*

RE36115.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:45:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG15701-PA 1051 CG15701-PA 1..1051 1..1051 5395 100 Plus