Clone RE36324 Report

Search the DGRC for RE36324

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:363
Well:24
Vector:pFlc-1
Associated Gene/Transcriptrhi-RA
Protein status:RE36324.pep: gold
Preliminary Size:1257
Sequenced Size:1583

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10683 2002-01-01 Sim4 clustering to Release 2
CG10683 2002-03-28 Blastp of sequenced clone
CG10683 2003-01-01 Sim4 clustering to Release 3
rhi 2008-04-29 Release 5.5 accounting
rhi 2008-08-15 Release 5.9 accounting
rhi 2008-12-18 5.12 accounting

Clone Sequence Records

RE36324.complete Sequence

1583 bp (1583 high quality bases) assembled on 2002-03-28

GenBank Submission: AY094869

> RE36324.complete
CTTTTTTTTTGCTCGGCGTCCTGTGAGCGGATAAGTTATGTCTCGCAACC
ATCAGCGACCAAATCTTGGTCTGGTCGATGCACCGCCTAATGATCATGTC
GAAGAATATGTAGTGGAGAAAATCTTAGGCAAACGGTTTGTTAATGGGCG
TCCCCAGGTTCTGGTGAAGTGGAGCGGTTTTCCGAACGAGAACAACACCT
GGGAACCATTGGAAAACGTAGGCAACTGCATGAAGCTGGTCTCCGACTTC
GAGTCGGAGGTCTTCAGGCTGCATCGGAAGGCCGCGGCTAAATCTGTCGG
GAAATCGAAGTCAAGTCCTAGCAGCAGCGGTCCATTGATCACCGAGAATG
GCCCCAGCAGCTCTAAGAAAACACAACAACATTCCAAGTCGGTGCAGGCA
AAAAACACAGCTGGAATGTCGAAGATGAATCAGAAAAAAGGAAAGAATAT
TAAGAAAACGGCGGGAAAAATCAAAGATATTGAAAATTATCCCAAAACTC
AGATGCCTAGTACTAGCCAAGTCTCCACAGATTCAACTGAAGTTTTCGAC
GGCAATCCATCAGCCACAACGACGAACATGATTAAGAGTCCCAGGATTCA
AAGCCTTTTCAGTGATCTGAACTTGATCGAACCCACTAAAGACAAAGATG
TGGGGGACACATCTTTAAAAACGCCTCCCAAATCGCGCCGGCTTATTGAA
TTTCCTCAACGGGAAGACGCACCATTGTCTTCGAAACATGTGTCTCCTAT
GCTGATTCGTAAAGAATCCCAACCATTGCAGAGCTCATGTACTGATGATT
CGGATTTGGGTGAATCCTCTTCCAGTATGTCGCTTCCTACAGTATCATCG
ACCAGCTCTGAGAAATCGATCAAGGTCACCAAATCGGAACCTAAAACGCT
CGGCCAGATAAAGTTTTCGTCTAGGTCATCCGATGGTGGTCATGCGGCTT
CATCGCTGGGCGCACCAAAAGAAGGGGACATTGGCTTGGATTTATCTGGC
AGTGATTCCATGGATTCCGAAGTGGAGAGCATGCGCCGCTGTCCGCGCCG
CAAGCGTAAAAAAACTTACCCGGATTGGAAATTCCCGGAGATGACGAAAC
CCTTCGGTGTGAATCGCGGACTGGATCTGGATAAAATTCTCCACTGCTAC
CAGATGAATGACGATCTATTCATGTTTGTCACGTGGAAGGGCTGCTCGTC
CATCGATGCAGTGCATATTAATGACATTAAGGAAGCGTATCCATTGCAGA
TAATTAAGTACTTCGAGAGCTTGAGGATCATTGTGCCCAAGTAAAGATGC
CTAGTACCGGGTTTGTACAACGTTTTGGCCAAAAAGAAAAATTCACATCA
CACAACATAATCGACTCCAAGTTCAAGGTCATCGCATCTAAGCTGGGTAA
ACTCCAGCTGACCCATCAAATTGATCTATTCAAAGGAAAAACACCGAGTT
GTGTTTATACTATGTTTTATGTTTTCTCCGTACATGTTGAAAAATGTACA
TATCAATGGTTTCAAGTAACCTGATATACTAACCTTTTTCCCCAATAAAT
TTTGTTTTTGGCCTGGCAAAAAAAAAAAAAAAA

RE36324.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:18:54
Subject Length Description Subject Range Query Range Score Percent Strand
rhi-RA 1663 rhi-RA 65..1627 7..1569 7800 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 14:12:05
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 13519583..13520606 1030..7 5120 100 Minus
chr2R 21145070 chr2R 13519051..13519332 1312..1031 1410 100 Minus
chr2R 21145070 chr2R 13515593..13515848 1565..1310 1280 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:52:22 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 14:12:03
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17632484..17633507 1030..7 5120 100 Minus
2R 25286936 2R 17631952..17632233 1312..1031 1410 100 Minus
2R 25286936 2R 17628489..17628748 1569..1310 1285 99.6 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:48:33
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 17633683..17634706 1030..7 5120 100 Minus
2R 25260384 2R 17633151..17633432 1312..1031 1410 100 Minus
2R 25260384 2R 17629688..17629947 1569..1310 1285 99.6 Minus
Blast to na_te.dros performed on 2019-03-15 14:12:03 has no hits.

RE36324.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 14:12:52 Download gff for RE36324.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 13515591..13515839 1319..1567 99 -> Minus
chr2R 13519042..13519332 1031..1318 98 <- Minus
chr2R 13519583..13520611 1..1030 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:12:32 Download gff for RE36324.complete
Subject Subject Range Query Range Percent Splice Strand
rhi-RA 1..1257 38..1294 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:23:32 Download gff for RE36324.complete
Subject Subject Range Query Range Percent Splice Strand
rhi-RA 1..1257 38..1294 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 00:23:13 Download gff for RE36324.complete
Subject Subject Range Query Range Percent Splice Strand
rhi-RA 1..1257 38..1294 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:59:50 Download gff for RE36324.complete
Subject Subject Range Query Range Percent Splice Strand
rhi-RA 1..1257 38..1294 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:54:20 Download gff for RE36324.complete
Subject Subject Range Query Range Percent Splice Strand
rhi-RA 1..1257 38..1294 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:50:26 Download gff for RE36324.complete
Subject Subject Range Query Range Percent Splice Strand
rhi-RA 1..1567 1..1567 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:23:32 Download gff for RE36324.complete
Subject Subject Range Query Range Percent Splice Strand
rhi-RA 1..1567 1..1567 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:23:13 Download gff for RE36324.complete
Subject Subject Range Query Range Percent Splice Strand
rhi-RA 4..1570 1..1567 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:59:50 Download gff for RE36324.complete
Subject Subject Range Query Range Percent Splice Strand
rhi-RA 1..1567 1..1567 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:54:20 Download gff for RE36324.complete
Subject Subject Range Query Range Percent Splice Strand
rhi-RA 4..1570 1..1567 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:12:52 Download gff for RE36324.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17628491..17628747 1311..1567 99 <- Minus
2R 17631954..17632233 1031..1310 100 <- Minus
2R 17632484..17633512 1..1030 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:12:52 Download gff for RE36324.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17628491..17628747 1311..1567 99 <- Minus
2R 17631954..17632233 1031..1310 100 <- Minus
2R 17632484..17633512 1..1030 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:12:52 Download gff for RE36324.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17628491..17628747 1311..1567 99 <- Minus
2R 17631954..17632233 1031..1310 100 <- Minus
2R 17632484..17633512 1..1030 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:23:13 Download gff for RE36324.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13519459..13519738 1031..1310 100 <- Minus
arm_2R 13515996..13516252 1311..1567 99 <- Minus
arm_2R 13519989..13521017 1..1030 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:32:45 Download gff for RE36324.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17629690..17629946 1311..1567 99 <- Minus
2R 17633153..17633432 1031..1310 100 <- Minus
2R 17633683..17634711 1..1030 99   Minus

RE36324.pep Sequence

Translation from 37 to 1293

> RE36324.pep
MSRNHQRPNLGLVDAPPNDHVEEYVVEKILGKRFVNGRPQVLVKWSGFPN
ENNTWEPLENVGNCMKLVSDFESEVFRLHRKAAAKSVGKSKSSPSSSGPL
ITENGPSSSKKTQQHSKSVQAKNTAGMSKMNQKKGKNIKKTAGKIKDIEN
YPKTQMPSTSQVSTDSTEVFDGNPSATTTNMIKSPRIQSLFSDLNLIEPT
KDKDVGDTSLKTPPKSRRLIEFPQREDAPLSSKHVSPMLIRKESQPLQSS
CTDDSDLGESSSSMSLPTVSSTSSEKSIKVTKSEPKTLGQIKFSSRSSDG
GHAASSLGAPKEGDIGLDLSGSDSMDSEVESMRRCPRRKRKKTYPDWKFP
EMTKPFGVNRGLDLDKILHCYQMNDDLFMFVTWKGCSSIDAVHINDIKEA
YPLQIIKYFESLRIIVPK*

RE36324.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 05:07:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\rhi-PA 395 GF13238-PA 19..79 23..90 235 58.8 Plus
Dana\GF19833-PA 78 GF19833-PA 17..70 23..76 211 66.7 Plus
Dana\GF13239-PA 73 GF13239-PA 10..68 356..414 183 49.2 Plus
Dana\GF19189-PA 227 GF19189-PA 3..73 23..96 147 41.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 05:07:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21036-PA 1817 GG21036-PA 1..326 1..306 701 52.3 Plus
Dere\GG21035-PA 84 GG21035-PA 17..75 19..77 209 55.9 Plus
Dere\GG18261-PA 132 GG18261-PA 23..83 17..77 185 54.1 Plus
Dere\GG18283-PA 238 GG18283-PA 3..73 23..96 148 41.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:59:32
Subject Length Description Subject Range Query Range Score Percent Strand
rhi-PA 418 CG10683-PA 1..418 1..418 2166 100 Plus
Oxp-PA 84 CG18186-PA 7..79 9..81 215 52.1 Plus
Su(var)205-PB 206 CG8409-PB 1..121 1..126 163 33.1 Plus
Su(var)205-PA 206 CG8409-PA 1..121 1..126 163 33.1 Plus
HP1b-PB 240 CG7041-PB 3..106 23..126 151 33 Plus
HP1b-PC 240 CG7041-PC 3..106 23..126 151 33 Plus
HP1b-PA 240 CG7041-PA 3..106 23..126 151 33 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 05:07:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20781-PA 353 GI20781-PA 34..87 24..76 185 50 Plus
Dmoj\GI20276-PA 180 GI20276-PA 3..130 23..148 161 35.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 05:07:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17684-PA 238 GL17684-PA 22..75 23..76 188 55.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 05:07:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\HP1Da-PA 317 GA14831-PA 22..75 23..76 186 55.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 05:07:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13712-PA 240 GM13712-PA 3..73 23..96 148 41.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 05:07:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\rhi-PA 789 GD25457-PA 1..307 1..293 1025 74.8 Plus
Dsim\GD16106-PA 252 GD16106-PA 177..244 345..412 216 50 Plus
Dsim\GD25456-PA 84 GD25456-PA 7..79 9..81 214 52.1 Plus
Dsim\GD16106-PA 252 GD16106-PA 2..128 3..137 185 34.8 Plus
Dsim\GD16926-PA 240 GD16926-PA 3..73 23..96 147 41.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 05:07:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20517-PA 645 GJ20517-PA 46..134 24..104 198 43.8 Plus
Dvir\GJ20517-PA 645 GJ20517-PA 579..643 353..417 158 40 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 05:07:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10664-PA 410 GK10664-PA 44..105 23..84 229 59.7 Plus
Dwil\GK19580-PA 89 GK19580-PA 29..83 26..80 164 50.9 Plus
Dwil\GK10664-PA 410 GK10664-PA 299..374 339..413 160 38.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 05:07:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\rhi-PA 1702 GE13979-PA 1..236 1..231 636 55.9 Plus
Dyak\GE17442-PA 291 GE17442-PA 118..278 256..415 261 35.1 Plus
Dyak\GE13978-PA 84 GE13978-PA 17..75 19..77 215 55.9 Plus
Dyak\GE17442-PA 291 GE17442-PA 21..83 23..84 213 61.9 Plus
Dyak\GE15815-PA 240 GE15815-PA 3..73 23..96 148 41.9 Plus

RE36324.hyp Sequence

Translation from 37 to 1293

> RE36324.hyp
MSRNHQRPNLGLVDAPPNDHVEEYVVEKILGKRFVNGRPQVLVKWSGFPN
ENNTWEPLENVGNCMKLVSDFESEVFRLHRKAAAKSVGKSKSSPSSSGPL
ITENGPSSSKKTQQHSKSVQAKNTAGMSKMNQKKGKNIKKTAGKIKDIEN
YPKTQMPSTSQVSTDSTEVFDGNPSATTTNMIKSPRIQSLFSDLNLIEPT
KDKDVGDTSLKTPPKSRRLIEFPQREDAPLSSKHVSPMLIRKESQPLQSS
CTDDSDLGESSSSMSLPTVSSTSSEKSIKVTKSEPKTLGQIKFSSRSSDG
GHAASSLGAPKEGDIGLDLSGSDSMDSEVESMRRCPRRKRKKTYPDWKFP
EMTKPFGVNRGLDLDKILHCYQMNDDLFMFVTWKGCSSIDAVHINDIKEA
YPLQIIKYFESLRIIVPK*

RE36324.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:21:19
Subject Length Description Subject Range Query Range Score Percent Strand
rhi-PA 418 CG10683-PA 1..418 1..418 2166 100 Plus
Oxp-PA 84 CG18186-PA 7..79 9..81 215 52.1 Plus
Su(var)205-PB 206 CG8409-PB 1..121 1..126 163 33.1 Plus
Su(var)205-PA 206 CG8409-PA 1..121 1..126 163 33.1 Plus
HP1b-PB 240 CG7041-PB 3..106 23..126 151 33 Plus