BDGP Sequence Production Resources |
Search the DGRC for RE36563
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 365 |
Well: | 63 |
Vector: | pFlc-1 |
Associated Gene/Transcript | ps-RC |
Protein status: | RE36563.pep: gold |
Sequenced Size: | 2635 |
Gene | Date | Evidence |
---|---|---|
CG8144 | 2002-10-19 | Blastp of sequenced clone |
CG8144 | 2003-01-01 | Sim4 clustering to Release 3 |
ps | 2008-04-29 | Release 5.5 accounting |
ps | 2008-08-15 | Release 5.9 accounting |
ps | 2008-12-18 | 5.12 accounting |
2635 bp (2635 high quality bases) assembled on 2002-10-19
GenBank Submission: BT001623
> RE36563.complete AGTGGGGTTTGGTTGCTCGTTTCGTGCGCTCGCTCGATCGCTCGCTGTTG CTCGTTTTCCACACACGAATTCCCAGCTAACGCGCAGCCATTTTGACAGT GATTTTATTGGTTTGGCTCTTTTGGCCAGCAGCATGTTGTTCGCCAGAAC CACCTCGTCCACGTCGATCAGTCCGCCCGCGATGATGATGCAGCAGCACC AGCAGCAGCAGCAGCAGCAGGATCCTCAGAAGCTGGGACAGCAATTCCAT CAGCAGCCAGCATTTCAGCTACAGCAAAGCTTCTGCGAGACAACGTATCA CATGAAAATACTGGTGCCCGCGGTGGCCTCCGGGGCCATCATTGGCAAAG GTGGCGAGACGATCGCCTCCCTGCAGAAGGACACGGGTGCTAGGGTCAAG ATGTCCAAGTCGCACGACTTCTACCCAGGCACCACCGAACGCGTGTGCCT GATCACCGGCTCCACGGAGGCTATCATGGTCGTGATGGAGTTCATCATGG ACAAGATCCGCGAGAAGCCCGACCTGACCAACAAGATCGTCGATACCGAC TCAAAACAGACACAGGAGCGCGACAAGCAGGTCAAGATCCTGGTGCCCAA CTCGACCGCCGGCATGATCATTGGCAAGGGCGGTGCCTTCATTAAACAGA TCAAGGAGGAGAGCGGCTCCTATGTCCAGATCTCGCAGAAGCCCACGGAT GTGTCGTTGCAGGAGCGCTGCATCACCATCATAGGCGACAAGGAGAACAA TAAGAACGCCTGCAAGATGATCCTCTCGAAGATCGTCGAAGATCCCCAGT CGGGCACCTGCCTGAACGTATCCTACGCGGACGTCAGCGGCCCGGTGGCC AACTTTAATCCGACCGGCTCCCCGTACGCCACCAATCAGAATGCCATCAA CTCGAGCACCGCTTCGTTGAACTCCACGTTGGGCACCACGATCGGCGGTG CAAACTCGGCGGCCAGCCTGCTAGTCAACGGCACCGGCATCAATTTGTCC ATCAATCTGGGCTCACCCAATCCGGCGCCCAATCTAGCGGTTGCCACACA GCTGCTCGAGCATATTAAGGTTGCCATGCGCGGCTCTGGCTATTCGGAGA CCGTAACGAACGAAGTTGTCGCCGCTCTGAGCGTGCTGGCCAAGTACGGC GTCCTTGGAATGGGCGTGGGTGTGTCGCACACCAACGGCGCCCACTCAAC GCTGGGCAACTTCCTGGGCGTAACGACGCTGGACCAGCAGACAGCCGCTG CCGCATCTGCGGCCACCGCCAGCAATGTGTTCGGTGCCGTTGGCCAGGTA AATCTGGAGCAATATGCCGCAGCGGTGGCCTCTGCAGCTGCCGCCAGCCG GCCGACGCAGTCGCAACTGGACGCTGCCGCAGTGCAATTCGATCCATTCC GCCATTTGGGCTCGGCAACGGCGCCGGCCGCCACGCCCGTCTCACTGAAC AACAATAGCTTTGGATTGACGGCGACCACGGGAACGGCGACCACGGCGCA GCTGGGCGGTCTAAGCAAGAGTCCCACTCCCGGTGACCTTAGCTCCAAGG ACTCGAAAAACGTCGAGGTGCCGGAAGTGATTATCGGCGCTATCCTAGGT CCGAGCGGTCGTAGTTTAGTTGAAATTCAACATGTTTCTGGCGCAAATGT GCAAATTTCCAAAAAGGGCATATTCGCACCTGGCACTAGAAATCGCATTG TAACCATAACTGGTCAGCCGAGTGCCATTGCCAAAGCGCAATATCTAATT GAACAGAAAATCAACGAGGAGGAGACAAAGAGGGCGCGACAAATTCCATT AACCACTGTTGTGAATTAAAATAAAAAAAACAAAAAGTACCATAACTAAT ATCCGAGTAAAGCAACAAAACCAGCAATCTTAACAGAACATCAAACAAAC AGGCAAAAAGCAAAGCAACAACAAACAAACTACCCCATACCCTCGACGGT TTTCCTCTAAAACTTGTTAATTTCTTTGAGAAACGAGAGGAAAATTTAAA AACCTAAAACTAAAAAGAAATGAAATGAAATGAGAAGGGATTACAAAAAG GAAACACCAATTGTTATGCTTGCAGCTCAGACTTAAGCAGTTAAAAGCGA AAATAATAATAATAACGTATTGCAAAAATCCATAGATTTTGTTCCAAGGC CTTCACCTCAAGAGATTTGCTACTAACGCCCTTTGCCTACTAACGCCCTT TAAGAAAGTGAAAAACGAGATATGCGAAGTAGTGAAAAATCTGTAAAAAT ACTATATGCGTACTACCTTCTCAGCTATACATTGTTGCATTTGTTTGTCA CGATCGTTAAAACGTAAAAACCGAAAACAAGTTATATTGCCAATGGCCAA TTGCCAGTTAGACACAAACTAGTTGCGAAAGAAGAGCGTTTGGGTTTTTG GTTTGTTTGTGATGCGTATGTTTGCGTTGCGTGTTTTGTTTTTGGTACTC CCAACCAACTTATACGATACGATACGTTACATGGGGCATATATACATATG TATATGTACACAGTTGTTGAGTCTTGTTTATATATATTATCTACACACAT ATGCCCATACATATATATATATACATATGCCACCACCCACTTACACACTT ACACACCGCCCCCCCCCCCAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
ps-RI | 4637 | ps-RI | 351..1666 | 285..1600 | 6580 | 100 | Plus |
ps.v | 5736 | ps.v | 351..1666 | 285..1600 | 6580 | 100 | Plus |
ps.t | 4825 | ps.t | 539..1854 | 285..1600 | 6580 | 100 | Plus |
ps-RI | 4637 | ps-RI | 2794..3828 | 1597..2631 | 5175 | 100 | Plus |
ps.v | 5736 | ps.v | 2794..3828 | 1597..2631 | 5175 | 100 | Plus |
ps.t | 4825 | ps.t | 2982..4016 | 1597..2631 | 5175 | 100 | Plus |
ps-RI | 4637 | ps-RI | 1..289 | 1..289 | 1415 | 99.3 | Plus |
ps.v | 5736 | ps.v | 1..289 | 1..289 | 1415 | 99.3 | Plus |
ps.t | 4825 | ps.t | 189..477 | 1..289 | 1415 | 99.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 5273481..5274499 | 1597..2615 | 5095 | 100 | Plus |
chr3R | 27901430 | chr3R | 5271106..5271752 | 426..1072 | 3235 | 100 | Plus |
chr3R | 27901430 | chr3R | 5271821..5272353 | 1068..1600 | 2665 | 100 | Plus |
chr3R | 27901430 | chr3R | 5262687..5262971 | 1..285 | 1410 | 99.6 | Plus |
chr3R | 27901430 | chr3R | 5270898..5271042 | 285..429 | 725 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 9447627..9448661 | 1597..2631 | 5175 | 100 | Plus |
3R | 32079331 | 3R | 9445252..9445898 | 426..1072 | 3235 | 100 | Plus |
3R | 32079331 | 3R | 9445967..9446499 | 1068..1600 | 2665 | 100 | Plus |
3R | 32079331 | 3R | 9436835..9437119 | 1..285 | 1410 | 99.6 | Plus |
3R | 32079331 | 3R | 9445044..9445188 | 285..429 | 725 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 9188458..9189492 | 1597..2631 | 5175 | 100 | Plus |
3R | 31820162 | 3R | 9186083..9186729 | 426..1072 | 3235 | 100 | Plus |
3R | 31820162 | 3R | 9186798..9187330 | 1068..1600 | 2665 | 100 | Plus |
3R | 31820162 | 3R | 9177666..9177950 | 1..285 | 1410 | 99.6 | Plus |
3R | 31820162 | 3R | 9185875..9186019 | 285..429 | 725 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dbuz\Kepler | 722 | Dbuz\Kepler KEPLER 722bp | 422..488 | 2487..2554 | 121 | 66.2 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 5273483..5274371 | 1599..2487 | 100 | == | Plus |
chr3R | 5270898..5271041 | 285..428 | 100 | -> | Plus |
chr3R | 5271109..5271749 | 429..1069 | 100 | -> | Plus |
chr3R | 5271823..5272351 | 1070..1598 | 100 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ps-RC | 1..1686 | 134..1819 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ps-RC | 1..1686 | 134..1819 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ps-RC | 1..1686 | 134..1819 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ps-RC | 1..1686 | 134..1819 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ps-RC | 1..1686 | 134..1819 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ps-RC | 1..2619 | 1..2619 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ps-RC | 1..2619 | 1..2619 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ps-RC | 1..2619 | 1..2619 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ps-RC | 1..2619 | 1..2619 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ps-RC | 1..2619 | 1..2619 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 9436835..9437118 | 1..284 | 99 | -> | Plus |
3R | 9445044..9445187 | 285..428 | 100 | -> | Plus |
3R | 9445255..9445895 | 429..1069 | 100 | -> | Plus |
3R | 9445969..9446497 | 1070..1598 | 100 | -> | Plus |
3R | 9447629..9448649 | 1599..2619 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 9436835..9437118 | 1..284 | 99 | -> | Plus |
3R | 9445044..9445187 | 285..428 | 100 | -> | Plus |
3R | 9445255..9445895 | 429..1069 | 100 | -> | Plus |
3R | 9445969..9446497 | 1070..1598 | 100 | -> | Plus |
3R | 9447629..9448649 | 1599..2619 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 9436835..9437118 | 1..284 | 99 | -> | Plus |
3R | 9445044..9445187 | 285..428 | 100 | -> | Plus |
3R | 9445255..9445895 | 429..1069 | 100 | -> | Plus |
3R | 9445969..9446497 | 1070..1598 | 100 | -> | Plus |
3R | 9447629..9448649 | 1599..2619 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 5262557..5262840 | 1..284 | 99 | -> | Plus |
arm_3R | 5270766..5270909 | 285..428 | 100 | -> | Plus |
arm_3R | 5270977..5271617 | 429..1069 | 100 | -> | Plus |
arm_3R | 5271691..5272219 | 1070..1598 | 100 | -> | Plus |
arm_3R | 5273351..5274371 | 1599..2619 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 9177666..9177949 | 1..284 | 99 | -> | Plus |
3R | 9185875..9186018 | 285..428 | 100 | -> | Plus |
3R | 9186086..9186726 | 429..1069 | 100 | -> | Plus |
3R | 9186800..9187328 | 1070..1598 | 100 | -> | Plus |
3R | 9188460..9189480 | 1599..2619 | 100 | Plus |
Translation from 0 to 1818
> RE36563.hyp VRFGCSFRALARSLAVARFPHTNSQLTRSHFDSDFIGLALLASSMLFART TSSTSISPPAMMMQQHQQQQQQQDPQKLGQQFHQQPAFQLQQSFCETTYH MKILVPAVASGAIIGKGGETIASLQKDTGARVKMSKSHDFYPGTTERVCL ITGSTEAIMVVMEFIMDKIREKPDLTNKIVDTDSKQTQERDKQVKILVPN STAGMIIGKGGAFIKQIKEESGSYVQISQKPTDVSLQERCITIIGDKENN KNACKMILSKIVEDPQSGTCLNVSYADVSGPVANFNPTGSPYATNQNAIN SSTASLNSTLGTTIGGANSAASLLVNGTGINLSINLGSPNPAPNLAVATQ LLEHIKVAMRGSGYSETVTNEVVAALSVLAKYGVLGMGVGVSHTNGAHST LGNFLGVTTLDQQTAAAASAATASNVFGAVGQVNLEQYAAAVASAAAASR PTQSQLDAAAVQFDPFRHLGSATAPAATPVSLNNNSFGLTATTGTATTAQ LGGLSKSPTPGDLSSKDSKNVEVPEVIIGAILGPSGRSLVEIQHVSGANV QISKKGIFAPGTRNRIVTITGQPSAIAKAQYLIEQKINEEETKRARQIPL TTVVN*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
ps-PC | 561 | CG8144-PC | 1..561 | 45..605 | 2803 | 100 | Plus |
ps-PD | 583 | CG8144-PD | 1..583 | 45..605 | 2770 | 96.2 | Plus |
ps-PS | 594 | CG42670-PS | 67..594 | 80..605 | 2538 | 97.3 | Plus |
ps-PL | 758 | CG16765-PL | 231..758 | 80..605 | 2538 | 97.3 | Plus |
ps-PR | 780 | CG42670-PR | 271..780 | 96..605 | 2536 | 100 | Plus |
Translation from 133 to 1818
> RE36563.pep MLFARTTSSTSISPPAMMMQQHQQQQQQQDPQKLGQQFHQQPAFQLQQSF CETTYHMKILVPAVASGAIIGKGGETIASLQKDTGARVKMSKSHDFYPGT TERVCLITGSTEAIMVVMEFIMDKIREKPDLTNKIVDTDSKQTQERDKQV KILVPNSTAGMIIGKGGAFIKQIKEESGSYVQISQKPTDVSLQERCITII GDKENNKNACKMILSKIVEDPQSGTCLNVSYADVSGPVANFNPTGSPYAT NQNAINSSTASLNSTLGTTIGGANSAASLLVNGTGINLSINLGSPNPAPN LAVATQLLEHIKVAMRGSGYSETVTNEVVAALSVLAKYGVLGMGVGVSHT NGAHSTLGNFLGVTTLDQQTAAAASAATASNVFGAVGQVNLEQYAAAVAS AAAASRPTQSQLDAAAVQFDPFRHLGSATAPAATPVSLNNNSFGLTATTG TATTAQLGGLSKSPTPGDLSSKDSKNVEVPEVIIGAILGPSGRSLVEIQH VSGANVQISKKGIFAPGTRNRIVTITGQPSAIAKAQYLIEQKINEEETKR ARQIPLTTVVN*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF17214-PA | 532 | GF17214-PA | 63..509 | 52..495 | 2053 | 94 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG16798-PA | 572 | GG16798-PA | 63..572 | 52..561 | 2609 | 97.8 | Plus |
Dere\GG16232-PA | 364 | GG16232-PA | 23..197 | 54..238 | 165 | 26.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH18435-PA | 569 | GH18435-PA | 63..565 | 52..551 | 2179 | 87.2 | Plus |
Dgri\GH14429-PA | 362 | GH14429-PA | 23..197 | 54..238 | 167 | 26.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
ps-PC | 561 | CG8144-PC | 1..561 | 1..561 | 2803 | 100 | Plus |
ps-PD | 583 | CG8144-PD | 1..583 | 1..561 | 2770 | 96.2 | Plus |
ps-PS | 594 | CG42670-PS | 67..594 | 36..561 | 2538 | 97.3 | Plus |
ps-PL | 758 | CG16765-PL | 231..758 | 36..561 | 2538 | 97.3 | Plus |
ps-PR | 780 | CG42670-PR | 271..780 | 52..561 | 2536 | 100 | Plus |
ps-PQ | 517 | CG42670-PQ | 8..517 | 52..561 | 2536 | 100 | Plus |
ps-PT | 616 | CG42670-PT | 107..616 | 52..561 | 2536 | 100 | Plus |
ps-PO | 572 | CG16765-PO | 63..572 | 52..561 | 2536 | 100 | Plus |
ps-PM | 550 | CG16765-PM | 41..550 | 52..561 | 2536 | 100 | Plus |
ps-PP | 550 | CG16765-PP | 41..550 | 52..561 | 2536 | 100 | Plus |
ps-PN | 572 | CG16765-PN | 63..572 | 52..561 | 2536 | 100 | Plus |
ps-PK | 550 | CG16765-PK | 41..550 | 52..561 | 2536 | 100 | Plus |
ps-PJ | 539 | CG16765-PJ | 30..539 | 52..561 | 2536 | 100 | Plus |
ps-PH | 572 | CG16765-PH | 63..572 | 52..561 | 2536 | 100 | Plus |
ps-PG | 572 | CG16765-PG | 63..572 | 52..561 | 2536 | 100 | Plus |
ps-PF | 572 | CG8144-PA | 63..572 | 52..561 | 2536 | 100 | Plus |
ps-PI | 519 | CG16765-PI | 1..511 | 1..489 | 2416 | 95.7 | Plus |
ps-PB | 475 | CG8144-PB | 30..467 | 52..489 | 2182 | 100 | Plus |
mub-PE | 557 | CG7437-PE | 23..431 | 54..466 | 221 | 25.2 | Plus |
mub-PF | 557 | CG7437-PF | 23..431 | 54..466 | 221 | 25.2 | Plus |
mub-PI | 539 | CG7437-PI | 23..413 | 54..466 | 214 | 24.8 | Plus |
mub-PD | 539 | CG7437-PD | 23..413 | 54..466 | 212 | 24.5 | Plus |
mub-PA | 386 | CG7437-PA | 23..304 | 54..332 | 200 | 26.6 | Plus |
mub-PL | 368 | CG7437-PL | 23..286 | 54..332 | 193 | 26.1 | Plus |
mub-PC | 364 | CG7437-PC | 23..282 | 54..332 | 189 | 26 | Plus |
mub-PG | 359 | CG7437-PG | 23..277 | 54..332 | 187 | 26.3 | Plus |
mub-PM | 359 | CG7437-PM | 23..277 | 54..332 | 187 | 26.3 | Plus |
mub-PK | 573 | CG7437-PK | 23..447 | 54..466 | 185 | 22.7 | Plus |
mub-PN | 415 | CG7437-PN | 23..197 | 54..238 | 175 | 26.3 | Plus |
mub-PH | 433 | CG7437-PH | 23..197 | 54..238 | 175 | 26.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI24011-PA | 574 | GI24011-PA | 63..574 | 52..561 | 2261 | 87.8 | Plus |
Dmoj\GI13561-PA | 362 | GI13561-PA | 23..197 | 54..238 | 164 | 26.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL13824-PA | 554 | GL13824-PA | 37..554 | 42..561 | 2307 | 86 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA30025-PC | 554 | GA30025-PC | 37..554 | 42..561 | 2480 | 93.7 | Plus |
Dpse\GA30025-PD | 576 | GA30025-PD | 37..576 | 42..561 | 2449 | 89.9 | Plus |
Dpse\GA30025-PE | 548 | GA30025-PE | 41..548 | 52..561 | 2426 | 93.7 | Plus |
Dpse\GA30025-PA | 570 | GA30025-PA | 63..570 | 52..561 | 2424 | 93.7 | Plus |
Dpse\GA30025-PF | 800 | GA30025-PF | 261..800 | 52..561 | 2384 | 88.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM23807-PA | 572 | GM23807-PA | 63..572 | 52..561 | 2595 | 97.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD18616-PA | 330 | GD18616-PA | 1..257 | 1..231 | 1180 | 87.9 | Plus |
Dsim\GD18616-PA | 330 | GD18616-PA | 241..330 | 474..561 | 379 | 85.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ23641-PA | 574 | GJ23641-PA | 63..574 | 52..561 | 2306 | 88.8 | Plus |
Dvir\GJ11921-PA | 589 | GJ11921-PA | 23..197 | 54..238 | 169 | 26.3 | Plus |