Clone RE36563 Report

Search the DGRC for RE36563

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:365
Well:63
Vector:pFlc-1
Associated Gene/Transcriptps-RC
Protein status:RE36563.pep: gold
Sequenced Size:2635

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8144 2002-10-19 Blastp of sequenced clone
CG8144 2003-01-01 Sim4 clustering to Release 3
ps 2008-04-29 Release 5.5 accounting
ps 2008-08-15 Release 5.9 accounting
ps 2008-12-18 5.12 accounting

Clone Sequence Records

RE36563.complete Sequence

2635 bp (2635 high quality bases) assembled on 2002-10-19

GenBank Submission: BT001623

> RE36563.complete
AGTGGGGTTTGGTTGCTCGTTTCGTGCGCTCGCTCGATCGCTCGCTGTTG
CTCGTTTTCCACACACGAATTCCCAGCTAACGCGCAGCCATTTTGACAGT
GATTTTATTGGTTTGGCTCTTTTGGCCAGCAGCATGTTGTTCGCCAGAAC
CACCTCGTCCACGTCGATCAGTCCGCCCGCGATGATGATGCAGCAGCACC
AGCAGCAGCAGCAGCAGCAGGATCCTCAGAAGCTGGGACAGCAATTCCAT
CAGCAGCCAGCATTTCAGCTACAGCAAAGCTTCTGCGAGACAACGTATCA
CATGAAAATACTGGTGCCCGCGGTGGCCTCCGGGGCCATCATTGGCAAAG
GTGGCGAGACGATCGCCTCCCTGCAGAAGGACACGGGTGCTAGGGTCAAG
ATGTCCAAGTCGCACGACTTCTACCCAGGCACCACCGAACGCGTGTGCCT
GATCACCGGCTCCACGGAGGCTATCATGGTCGTGATGGAGTTCATCATGG
ACAAGATCCGCGAGAAGCCCGACCTGACCAACAAGATCGTCGATACCGAC
TCAAAACAGACACAGGAGCGCGACAAGCAGGTCAAGATCCTGGTGCCCAA
CTCGACCGCCGGCATGATCATTGGCAAGGGCGGTGCCTTCATTAAACAGA
TCAAGGAGGAGAGCGGCTCCTATGTCCAGATCTCGCAGAAGCCCACGGAT
GTGTCGTTGCAGGAGCGCTGCATCACCATCATAGGCGACAAGGAGAACAA
TAAGAACGCCTGCAAGATGATCCTCTCGAAGATCGTCGAAGATCCCCAGT
CGGGCACCTGCCTGAACGTATCCTACGCGGACGTCAGCGGCCCGGTGGCC
AACTTTAATCCGACCGGCTCCCCGTACGCCACCAATCAGAATGCCATCAA
CTCGAGCACCGCTTCGTTGAACTCCACGTTGGGCACCACGATCGGCGGTG
CAAACTCGGCGGCCAGCCTGCTAGTCAACGGCACCGGCATCAATTTGTCC
ATCAATCTGGGCTCACCCAATCCGGCGCCCAATCTAGCGGTTGCCACACA
GCTGCTCGAGCATATTAAGGTTGCCATGCGCGGCTCTGGCTATTCGGAGA
CCGTAACGAACGAAGTTGTCGCCGCTCTGAGCGTGCTGGCCAAGTACGGC
GTCCTTGGAATGGGCGTGGGTGTGTCGCACACCAACGGCGCCCACTCAAC
GCTGGGCAACTTCCTGGGCGTAACGACGCTGGACCAGCAGACAGCCGCTG
CCGCATCTGCGGCCACCGCCAGCAATGTGTTCGGTGCCGTTGGCCAGGTA
AATCTGGAGCAATATGCCGCAGCGGTGGCCTCTGCAGCTGCCGCCAGCCG
GCCGACGCAGTCGCAACTGGACGCTGCCGCAGTGCAATTCGATCCATTCC
GCCATTTGGGCTCGGCAACGGCGCCGGCCGCCACGCCCGTCTCACTGAAC
AACAATAGCTTTGGATTGACGGCGACCACGGGAACGGCGACCACGGCGCA
GCTGGGCGGTCTAAGCAAGAGTCCCACTCCCGGTGACCTTAGCTCCAAGG
ACTCGAAAAACGTCGAGGTGCCGGAAGTGATTATCGGCGCTATCCTAGGT
CCGAGCGGTCGTAGTTTAGTTGAAATTCAACATGTTTCTGGCGCAAATGT
GCAAATTTCCAAAAAGGGCATATTCGCACCTGGCACTAGAAATCGCATTG
TAACCATAACTGGTCAGCCGAGTGCCATTGCCAAAGCGCAATATCTAATT
GAACAGAAAATCAACGAGGAGGAGACAAAGAGGGCGCGACAAATTCCATT
AACCACTGTTGTGAATTAAAATAAAAAAAACAAAAAGTACCATAACTAAT
ATCCGAGTAAAGCAACAAAACCAGCAATCTTAACAGAACATCAAACAAAC
AGGCAAAAAGCAAAGCAACAACAAACAAACTACCCCATACCCTCGACGGT
TTTCCTCTAAAACTTGTTAATTTCTTTGAGAAACGAGAGGAAAATTTAAA
AACCTAAAACTAAAAAGAAATGAAATGAAATGAGAAGGGATTACAAAAAG
GAAACACCAATTGTTATGCTTGCAGCTCAGACTTAAGCAGTTAAAAGCGA
AAATAATAATAATAACGTATTGCAAAAATCCATAGATTTTGTTCCAAGGC
CTTCACCTCAAGAGATTTGCTACTAACGCCCTTTGCCTACTAACGCCCTT
TAAGAAAGTGAAAAACGAGATATGCGAAGTAGTGAAAAATCTGTAAAAAT
ACTATATGCGTACTACCTTCTCAGCTATACATTGTTGCATTTGTTTGTCA
CGATCGTTAAAACGTAAAAACCGAAAACAAGTTATATTGCCAATGGCCAA
TTGCCAGTTAGACACAAACTAGTTGCGAAAGAAGAGCGTTTGGGTTTTTG
GTTTGTTTGTGATGCGTATGTTTGCGTTGCGTGTTTTGTTTTTGGTACTC
CCAACCAACTTATACGATACGATACGTTACATGGGGCATATATACATATG
TATATGTACACAGTTGTTGAGTCTTGTTTATATATATTATCTACACACAT
ATGCCCATACATATATATATATACATATGCCACCACCCACTTACACACTT
ACACACCGCCCCCCCCCCCAAAAAAAAAAAAAAAA

RE36563.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:53:21
Subject Length Description Subject Range Query Range Score Percent Strand
ps-RI 4637 ps-RI 351..1666 285..1600 6580 100 Plus
ps.v 5736 ps.v 351..1666 285..1600 6580 100 Plus
ps.t 4825 ps.t 539..1854 285..1600 6580 100 Plus
ps-RI 4637 ps-RI 2794..3828 1597..2631 5175 100 Plus
ps.v 5736 ps.v 2794..3828 1597..2631 5175 100 Plus
ps.t 4825 ps.t 2982..4016 1597..2631 5175 100 Plus
ps-RI 4637 ps-RI 1..289 1..289 1415 99.3 Plus
ps.v 5736 ps.v 1..289 1..289 1415 99.3 Plus
ps.t 4825 ps.t 189..477 1..289 1415 99.3 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 05:35:56
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 5273481..5274499 1597..2615 5095 100 Plus
chr3R 27901430 chr3R 5271106..5271752 426..1072 3235 100 Plus
chr3R 27901430 chr3R 5271821..5272353 1068..1600 2665 100 Plus
chr3R 27901430 chr3R 5262687..5262971 1..285 1410 99.6 Plus
chr3R 27901430 chr3R 5270898..5271042 285..429 725 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:52:26 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 05:35:54
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9447627..9448661 1597..2631 5175 100 Plus
3R 32079331 3R 9445252..9445898 426..1072 3235 100 Plus
3R 32079331 3R 9445967..9446499 1068..1600 2665 100 Plus
3R 32079331 3R 9436835..9437119 1..285 1410 99.6 Plus
3R 32079331 3R 9445044..9445188 285..429 725 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:12:43
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 9188458..9189492 1597..2631 5175 100 Plus
3R 31820162 3R 9186083..9186729 426..1072 3235 100 Plus
3R 31820162 3R 9186798..9187330 1068..1600 2665 100 Plus
3R 31820162 3R 9177666..9177950 1..285 1410 99.6 Plus
3R 31820162 3R 9185875..9186019 285..429 725 100 Plus
Blast to na_te.dros performed 2019-03-16 05:35:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dbuz\Kepler 722 Dbuz\Kepler KEPLER 722bp 422..488 2487..2554 121 66.2 Plus

RE36563.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 05:37:09 Download gff for RE36563.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 5273483..5274371 1599..2487 100 == Plus
chr3R 5270898..5271041 285..428 100 -> Plus
chr3R 5271109..5271749 429..1069 100 -> Plus
chr3R 5271823..5272351 1070..1598 100 -> Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:08:14 Download gff for RE36563.complete
Subject Subject Range Query Range Percent Splice Strand
ps-RC 1..1686 134..1819 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:50:10 Download gff for RE36563.complete
Subject Subject Range Query Range Percent Splice Strand
ps-RC 1..1686 134..1819 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 08:28:11 Download gff for RE36563.complete
Subject Subject Range Query Range Percent Splice Strand
ps-RC 1..1686 134..1819 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:32:18 Download gff for RE36563.complete
Subject Subject Range Query Range Percent Splice Strand
ps-RC 1..1686 134..1819 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:06:01 Download gff for RE36563.complete
Subject Subject Range Query Range Percent Splice Strand
ps-RC 1..1686 134..1819 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:08:14 Download gff for RE36563.complete
Subject Subject Range Query Range Percent Splice Strand
ps-RC 1..2619 1..2619 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:50:10 Download gff for RE36563.complete
Subject Subject Range Query Range Percent Splice Strand
ps-RC 1..2619 1..2619 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:28:11 Download gff for RE36563.complete
Subject Subject Range Query Range Percent Splice Strand
ps-RC 1..2619 1..2619 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:32:18 Download gff for RE36563.complete
Subject Subject Range Query Range Percent Splice Strand
ps-RC 1..2619 1..2619 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:06:01 Download gff for RE36563.complete
Subject Subject Range Query Range Percent Splice Strand
ps-RC 1..2619 1..2619 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:37:09 Download gff for RE36563.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9436835..9437118 1..284 99 -> Plus
3R 9445044..9445187 285..428 100 -> Plus
3R 9445255..9445895 429..1069 100 -> Plus
3R 9445969..9446497 1070..1598 100 -> Plus
3R 9447629..9448649 1599..2619 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:37:09 Download gff for RE36563.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9436835..9437118 1..284 99 -> Plus
3R 9445044..9445187 285..428 100 -> Plus
3R 9445255..9445895 429..1069 100 -> Plus
3R 9445969..9446497 1070..1598 100 -> Plus
3R 9447629..9448649 1599..2619 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:37:09 Download gff for RE36563.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9436835..9437118 1..284 99 -> Plus
3R 9445044..9445187 285..428 100 -> Plus
3R 9445255..9445895 429..1069 100 -> Plus
3R 9445969..9446497 1070..1598 100 -> Plus
3R 9447629..9448649 1599..2619 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:28:11 Download gff for RE36563.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5262557..5262840 1..284 99 -> Plus
arm_3R 5270766..5270909 285..428 100 -> Plus
arm_3R 5270977..5271617 429..1069 100 -> Plus
arm_3R 5271691..5272219 1070..1598 100 -> Plus
arm_3R 5273351..5274371 1599..2619 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:12:19 Download gff for RE36563.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9177666..9177949 1..284 99 -> Plus
3R 9185875..9186018 285..428 100 -> Plus
3R 9186086..9186726 429..1069 100 -> Plus
3R 9186800..9187328 1070..1598 100 -> Plus
3R 9188460..9189480 1599..2619 100   Plus

RE36563.hyp Sequence

Translation from 0 to 1818

> RE36563.hyp
VRFGCSFRALARSLAVARFPHTNSQLTRSHFDSDFIGLALLASSMLFART
TSSTSISPPAMMMQQHQQQQQQQDPQKLGQQFHQQPAFQLQQSFCETTYH
MKILVPAVASGAIIGKGGETIASLQKDTGARVKMSKSHDFYPGTTERVCL
ITGSTEAIMVVMEFIMDKIREKPDLTNKIVDTDSKQTQERDKQVKILVPN
STAGMIIGKGGAFIKQIKEESGSYVQISQKPTDVSLQERCITIIGDKENN
KNACKMILSKIVEDPQSGTCLNVSYADVSGPVANFNPTGSPYATNQNAIN
SSTASLNSTLGTTIGGANSAASLLVNGTGINLSINLGSPNPAPNLAVATQ
LLEHIKVAMRGSGYSETVTNEVVAALSVLAKYGVLGMGVGVSHTNGAHST
LGNFLGVTTLDQQTAAAASAATASNVFGAVGQVNLEQYAAAVASAAAASR
PTQSQLDAAAVQFDPFRHLGSATAPAATPVSLNNNSFGLTATTGTATTAQ
LGGLSKSPTPGDLSSKDSKNVEVPEVIIGAILGPSGRSLVEIQHVSGANV
QISKKGIFAPGTRNRIVTITGQPSAIAKAQYLIEQKINEEETKRARQIPL
TTVVN*

RE36563.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:00:20
Subject Length Description Subject Range Query Range Score Percent Strand
ps-PC 561 CG8144-PC 1..561 45..605 2803 100 Plus
ps-PD 583 CG8144-PD 1..583 45..605 2770 96.2 Plus
ps-PS 594 CG42670-PS 67..594 80..605 2538 97.3 Plus
ps-PL 758 CG16765-PL 231..758 80..605 2538 97.3 Plus
ps-PR 780 CG42670-PR 271..780 96..605 2536 100 Plus

RE36563.pep Sequence

Translation from 133 to 1818

> RE36563.pep
MLFARTTSSTSISPPAMMMQQHQQQQQQQDPQKLGQQFHQQPAFQLQQSF
CETTYHMKILVPAVASGAIIGKGGETIASLQKDTGARVKMSKSHDFYPGT
TERVCLITGSTEAIMVVMEFIMDKIREKPDLTNKIVDTDSKQTQERDKQV
KILVPNSTAGMIIGKGGAFIKQIKEESGSYVQISQKPTDVSLQERCITII
GDKENNKNACKMILSKIVEDPQSGTCLNVSYADVSGPVANFNPTGSPYAT
NQNAINSSTASLNSTLGTTIGGANSAASLLVNGTGINLSINLGSPNPAPN
LAVATQLLEHIKVAMRGSGYSETVTNEVVAALSVLAKYGVLGMGVGVSHT
NGAHSTLGNFLGVTTLDQQTAAAASAATASNVFGAVGQVNLEQYAAAVAS
AAAASRPTQSQLDAAAVQFDPFRHLGSATAPAATPVSLNNNSFGLTATTG
TATTAQLGGLSKSPTPGDLSSKDSKNVEVPEVIIGAILGPSGRSLVEIQH
VSGANVQISKKGIFAPGTRNRIVTITGQPSAIAKAQYLIEQKINEEETKR
ARQIPLTTVVN*

RE36563.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 22:55:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17214-PA 532 GF17214-PA 63..509 52..495 2053 94 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 22:55:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16798-PA 572 GG16798-PA 63..572 52..561 2609 97.8 Plus
Dere\GG16232-PA 364 GG16232-PA 23..197 54..238 165 26.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 22:55:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18435-PA 569 GH18435-PA 63..565 52..551 2179 87.2 Plus
Dgri\GH14429-PA 362 GH14429-PA 23..197 54..238 167 26.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:13:10
Subject Length Description Subject Range Query Range Score Percent Strand
ps-PC 561 CG8144-PC 1..561 1..561 2803 100 Plus
ps-PD 583 CG8144-PD 1..583 1..561 2770 96.2 Plus
ps-PS 594 CG42670-PS 67..594 36..561 2538 97.3 Plus
ps-PL 758 CG16765-PL 231..758 36..561 2538 97.3 Plus
ps-PR 780 CG42670-PR 271..780 52..561 2536 100 Plus
ps-PQ 517 CG42670-PQ 8..517 52..561 2536 100 Plus
ps-PT 616 CG42670-PT 107..616 52..561 2536 100 Plus
ps-PO 572 CG16765-PO 63..572 52..561 2536 100 Plus
ps-PM 550 CG16765-PM 41..550 52..561 2536 100 Plus
ps-PP 550 CG16765-PP 41..550 52..561 2536 100 Plus
ps-PN 572 CG16765-PN 63..572 52..561 2536 100 Plus
ps-PK 550 CG16765-PK 41..550 52..561 2536 100 Plus
ps-PJ 539 CG16765-PJ 30..539 52..561 2536 100 Plus
ps-PH 572 CG16765-PH 63..572 52..561 2536 100 Plus
ps-PG 572 CG16765-PG 63..572 52..561 2536 100 Plus
ps-PF 572 CG8144-PA 63..572 52..561 2536 100 Plus
ps-PI 519 CG16765-PI 1..511 1..489 2416 95.7 Plus
ps-PB 475 CG8144-PB 30..467 52..489 2182 100 Plus
mub-PE 557 CG7437-PE 23..431 54..466 221 25.2 Plus
mub-PF 557 CG7437-PF 23..431 54..466 221 25.2 Plus
mub-PI 539 CG7437-PI 23..413 54..466 214 24.8 Plus
mub-PD 539 CG7437-PD 23..413 54..466 212 24.5 Plus
mub-PA 386 CG7437-PA 23..304 54..332 200 26.6 Plus
mub-PL 368 CG7437-PL 23..286 54..332 193 26.1 Plus
mub-PC 364 CG7437-PC 23..282 54..332 189 26 Plus
mub-PG 359 CG7437-PG 23..277 54..332 187 26.3 Plus
mub-PM 359 CG7437-PM 23..277 54..332 187 26.3 Plus
mub-PK 573 CG7437-PK 23..447 54..466 185 22.7 Plus
mub-PN 415 CG7437-PN 23..197 54..238 175 26.3 Plus
mub-PH 433 CG7437-PH 23..197 54..238 175 26.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 22:55:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24011-PA 574 GI24011-PA 63..574 52..561 2261 87.8 Plus
Dmoj\GI13561-PA 362 GI13561-PA 23..197 54..238 164 26.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 22:55:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13824-PA 554 GL13824-PA 37..554 42..561 2307 86 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 22:55:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA30025-PC 554 GA30025-PC 37..554 42..561 2480 93.7 Plus
Dpse\GA30025-PD 576 GA30025-PD 37..576 42..561 2449 89.9 Plus
Dpse\GA30025-PE 548 GA30025-PE 41..548 52..561 2426 93.7 Plus
Dpse\GA30025-PA 570 GA30025-PA 63..570 52..561 2424 93.7 Plus
Dpse\GA30025-PF 800 GA30025-PF 261..800 52..561 2384 88.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 22:55:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23807-PA 572 GM23807-PA 63..572 52..561 2595 97.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 22:55:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18616-PA 330 GD18616-PA 1..257 1..231 1180 87.9 Plus
Dsim\GD18616-PA 330 GD18616-PA 241..330 474..561 379 85.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 22:55:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23641-PA 574 GJ23641-PA 63..574 52..561 2306 88.8 Plus
Dvir\GJ11921-PA 589 GJ11921-PA 23..197 54..238 169 26.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 22:55:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10958-PA 578 GK10958-PA 63..578 52..561 2275 90.3 Plus
Dwil\GK10610-PA 363 GK10610-PA 23..197 54..238 165 26.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 22:55:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25952-PA 572 GE25952-PA 63..572 52..561 2601 97.3 Plus
Dyak\GE22592-PA 364 GE22592-PA 23..197 54..238 165 26.3 Plus