BDGP Sequence Production Resources |
Search the DGRC for RE36566
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 365 |
Well: | 66 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG42819-RA |
Protein status: | RE36566.pep: gold |
Sequenced Size: | 616 |
Gene | Date | Evidence |
---|---|---|
CG41819-RA | 2011-02-22 | Manual selection by Sue Celniker |
616 bp assembled on 2011-03-18
GenBank Submission: BT126229.1
> RE36566.complete ATCAATCAATCAACAACGGTTCCCTCATAAGTTCGTGTATCTCTTGCGTC AAAGCCAATATGCGCAGCTACGTGAAGTCATCCTGTTCCTTGCTGGTTCT GGTCCTGGCACTTGGAGCGGTTTCAGCTCAGCCAGCACGGCTGGCAAAGC AACTTCAGAAACAGCAGGCAGCACCCTATCCATCCGCCGACGAACTGAAG CCGGAGGTGCCATTCGAGGAAGGAGTTCCGGATCAGACATATGGACCACC GGATCTGACCTACGGCCCACCGCCTACCGATGCAGTTGAGCAGCTACCCA GCGATGAGGAGCCGCAAGACTTTACACCCGATCCGGATGCAGAGGAAGTT CAGCCTGTCCAGCAGGCACCCGCTCGCCTGACCAAGCAGATTAGGAACGG TCCACGAGCTCAAGGACTGATTCTGCTCTCATCGAGTCCATTGAGAGTGG CTAATTCCAATGGAATCCCATTCCCAGTGACCATTCAAGCCCTGTGGTAG GAATACTAAATAACATCAATTGTACTGATTTTTATAAACATTATATTAAT TATTGTCTTTGTTACCGATTGAACTATTAAAGAACATTTGTTGATACACC GAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2L | 23010047 | chr2L | 8387638..8388238 | 601..1 | 2885 | 98.7 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 8388726..8389328 | 603..1 | 3015 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 8388726..8389328 | 603..1 | 3015 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
TAHRE | 10463 | TAHRE OSV 10463bp | 6776..6835 | 564..507 | 114 | 70 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 8387638..8388238 | 1..601 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG42819-RA | 1..441 | 60..500 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG42819-RA | 1..441 | 60..500 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG42819-RA | 1..441 | 60..500 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG42819-RA | 1..577 | 25..601 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG42819-RA | 4..604 | 1..601 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG42819-RA | 4..604 | 1..601 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 8388728..8389328 | 1..601 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 8388728..8389328 | 1..601 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 8388728..8389328 | 1..601 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 8388728..8389328 | 1..601 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 8388728..8389328 | 1..601 | 100 | Minus |
Translation from 2 to 499
> RE36566.hyp QSINNGSLISSCISCVKANMRSYVKSSCSLLVLVLALGAVSAQPARLAKQ LQKQQAAPYPSADELKPEVPFEEGVPDQTYGPPDLTYGPPPTDAVEQLPS DEEPQDFTPDPDAEEVQPVQQAPARLTKQIRNGPRAQGLILLSSSPLRVA NSNGIPFPVTIQALW*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG42819-PA | 146 | CG42819-PA | 1..146 | 20..165 | 754 | 100 | Plus |
Translation from 2 to 499
> RE36566.pep QSINNGSLISSCISCVKANMRSYVKSSCSLLVLVLALGAVSAQPARLAKQ LQKQQAAPYPSADELKPEVPFEEGVPDQTYGPPDLTYGPPPTDAVEQLPS DEEPQDFTPDPDAEEVQPVQQAPARLTKQIRNGPRAQGLILLSSSPLRVA NSNGIPFPVTIQALW*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF14681-PA | 852 | GF14681-PA | 705..852 | 18..165 | 579 | 72.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG23446-PA | 146 | GG23446-PA | 1..146 | 20..165 | 701 | 94.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG42819-PA | 146 | CG42819-PA | 1..146 | 20..165 | 754 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL25807-PA | 144 | GL25807-PA | 1..144 | 20..165 | 532 | 71.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA25455-PA | 144 | GA25455-PA | 1..144 | 20..165 | 529 | 71.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM12983-PA | 825 | GM12983-PA | 679..825 | 19..165 | 746 | 98 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD22409-PA | 826 | GD22409-PA | 680..826 | 19..165 | 751 | 98.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK18688-PA | 720 | GK18688-PA | 560..699 | 19..144 | 363 | 60 | Plus |
Dwil\GK18926-PA | 159 | GK18926-PA | 1..138 | 20..144 | 361 | 60.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE11023-PA | 145 | GE11023-PA | 1..145 | 20..165 | 682 | 93.8 | Plus |