Clone RE36623 Report

Search the DGRC for RE36623

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:366
Well:23
Vector:pFlc-1
Associated Gene/TranscriptYeti-RA
Protein status:RE36623.pep: gold
Sequenced Size:917

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG17866 2002-01-01 Sim4 clustering to Release 2
CG40218 2002-02-22 Blastp of sequenced clone
CG40218 2003-01-01 Sim4 clustering to Release 3
Yeti 2008-08-15 Release 5.9 accounting
Yeti 2008-12-18 5.12 accounting

Clone Sequence Records

RE36623.complete Sequence

917 bp (917 high quality bases) assembled on 2002-02-22

GenBank Submission: AY089623

> RE36623.complete
ATATTTTTTTTGGTTATGAGGAACAGACACAATGAACTCACAAAAAGAAT
ACGTATCGGACTGCGAAACCGACGATGATTATTATGTCGATTTGTTAACT
TCAGGCAAGGGCAGTGATAAGAGTGAAAGTGATGTGTCGGACAAGTCTGA
AAATTATCCAGGCCTAAAATCAAAGCATACTGCGAAGGCATTGCGGAAAA
CAAGGCATTGTGACGGCGATAATAGGGAATACAGGTCTAAGGAGTGCGAC
GACCTTCATTCCGAAGAGGAGTCTGAAAAATCGCGGTCGGATGCTTTATG
GGCCGATTTTCTTGGCGACATTGATACTAAAAGCGTAATCAACCAAAAAA
CAGATTATACGGAGGGAAACGCAGCAAGTGCTACCAATACCAATACGCAT
GAGACTTGTAATAAATATGATAAAAACGATACGGCAATAATAAAAACTGC
ACAGCAATACGATTCCAAAAGAACCACGCTTTCAGTTTCCACACTCGGAA
AAATTAAACGATCATCCGCTGAAAAGAGTATCGGTACCATGATAAATAAA
TTTGAAAAGAAGAAAAAATTGACAGTGCTTGAAAGGTCACAATTGGATTG
GAAAATATTTAAACAAGACGAAGGCATAGACGAACTTCTGTGCTCGCATA
ACAAAGGCAAGGACGGGTATTTGGACCGTCAAGACTTTTTGGAGAGAACC
GATCTTAGGCAGTTTGAAATGGAAAAGAAGTTGCGGCTGTCTCGCAGGCC
ATACTAACGGCTTAACCAACGTCGACACGGTAGCGCTGACTTCTTTGAAT
AACGAATATATACATATAGTCTATTAAATATATTACATTTTGTTCTATAA
CAAAATAATAAAAAAATGGTTGGGCTTACACCAATTCAATCAAAATAAAA
GAAAAAAAAAAAAAAAA

RE36623.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:25:26
Subject Length Description Subject Range Query Range Score Percent Strand
Yeti-RA 1117 Yeti-RA 72..963 6..897 4460 100 Plus
Yeti.a 1711 Yeti.a 72..963 6..897 4460 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 05:36:04
Subject Length Description Subject Range Query Range Score Percent Strand
chr2RHet 3288813 chr2RHet 471144..471806 668..6 3315 100 Minus
chr2RHet 3288813 chr2RHet 470846..471077 897..666 1160 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:52:30 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 05:36:02
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 1344449..1345111 668..6 3315 100 Minus
2R 25286936 2R 1344151..1344382 897..666 1160 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:54:29
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 1344449..1345111 668..6 3315 100 Minus
2R 25260384 2R 1344151..1344382 897..666 1160 100 Minus
Blast to na_te.dros performed on 2019-03-16 05:36:03 has no hits.

RE36623.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 05:37:14 Download gff for RE36623.complete
Subject Subject Range Query Range Percent Splice Strand
chr2RHet 470844..471076 667..901 98 <- Minus
chr2RHet 471146..471809 1..666 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:12:41 Download gff for RE36623.complete
Subject Subject Range Query Range Percent Splice Strand
Yeti-RA 1..726 32..757 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:38:16 Download gff for RE36623.complete
Subject Subject Range Query Range Percent Splice Strand
Yeti-RA 1..726 32..757 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 08:28:17 Download gff for RE36623.complete
Subject Subject Range Query Range Percent Splice Strand
Yeti-RA 1..726 32..757 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:08:45 Download gff for RE36623.complete
Subject Subject Range Query Range Percent Splice Strand
Yeti-RA 1..726 32..757 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:06:09 Download gff for RE36623.complete
Subject Subject Range Query Range Percent Splice Strand
Yeti-RA 1..726 32..757 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:03:22 Download gff for RE36623.complete
Subject Subject Range Query Range Percent Splice Strand
Yeti-RA 1..894 3..896 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:38:16 Download gff for RE36623.complete
Subject Subject Range Query Range Percent Splice Strand
Yeti-RA 1..894 3..896 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:28:17 Download gff for RE36623.complete
Subject Subject Range Query Range Percent Splice Strand
Yeti-RA 6..899 1..896 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:08:45 Download gff for RE36623.complete
Subject Subject Range Query Range Percent Splice Strand
Yeti-RA 1..894 3..896 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:06:09 Download gff for RE36623.complete
Subject Subject Range Query Range Percent Splice Strand
Yeti-RB 6..902 1..901 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:37:14 Download gff for RE36623.complete
Subject Subject Range Query Range Percent Splice Strand
2R 1344149..1344381 667..901 98 <- Minus
2R 1344451..1345114 1..666 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:37:14 Download gff for RE36623.complete
Subject Subject Range Query Range Percent Splice Strand
2R 1344149..1344381 667..901 98 <- Minus
2R 1344451..1345114 1..666 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:37:14 Download gff for RE36623.complete
Subject Subject Range Query Range Percent Splice Strand
2R 1344149..1344381 667..901 98 <- Minus
2R 1344451..1345114 1..666 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:28:17 Download gff for RE36623.complete
Subject Subject Range Query Range Percent Splice Strand
2RHet 470782..471014 667..901 98 <- Minus
2RHet 471084..471747 1..666 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:42:52 Download gff for RE36623.complete
Subject Subject Range Query Range Percent Splice Strand
2R 1344149..1344381 667..901 98 <- Minus
2R 1344451..1345114 1..666 99   Minus

RE36623.pep Sequence

Translation from 31 to 756

> RE36623.pep
MNSQKEYVSDCETDDDYYVDLLTSGKGSDKSESDVSDKSENYPGLKSKHT
AKALRKTRHCDGDNREYRSKECDDLHSEEESEKSRSDALWADFLGDIDTK
SVINQKTDYTEGNAASATNTNTHETCNKYDKNDTAIIKTAQQYDSKRTTL
SVSTLGKIKRSSAEKSIGTMINKFEKKKKLTVLERSQLDWKIFKQDEGID
ELLCSHNKGKDGYLDRQDFLERTDLRQFEMEKKLRLSRRPY*

RE36623.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 00:04:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11025-PA 272 GF11025-PA 45..270 11..239 386 40.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 00:04:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10889-PA 236 GG10889-PA 1..236 1..241 753 64.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 00:04:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21272-PA 285 GH21272-PA 86..283 55..239 333 41.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:12:06
Subject Length Description Subject Range Query Range Score Percent Strand
Yeti-PB 241 CG40218-PB 1..241 1..241 1261 100 Plus
Yeti-PA 241 CG40218-PA 1..241 1..241 1261 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 00:04:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20398-PA 295 GI20398-PA 81..293 55..239 346 42.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 00:04:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11059-PA 275 GL11059-PA 1..273 1..239 426 40.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 00:04:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA24593-PA 275 GA24593-PA 1..273 1..239 431 39.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 00:04:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11057-PA 241 GM11057-PA 1..241 1..241 1022 86.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 00:04:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19702-PA 241 GD19702-PA 1..241 1..241 1016 86.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 00:04:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22228-PA 300 GJ22228-PA 77..298 51..239 355 38.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 00:04:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10760-PA 273 GK10760-PA 1..271 1..239 387 40.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 00:04:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18886-PA 215 GE18886-PA 1..215 1..241 694 60.9 Plus

RE36623.hyp Sequence

Translation from 31 to 756

> RE36623.hyp
MNSQKEYVSDCETDDDYYVDLLTSGKGSDKSESDVSDKSENYPGLKSKHT
AKALRKTRHCDGDNREYRSKECDDLHSEEESEKSRSDALWADFLGDIDTK
SVINQKTDYTEGNAASATNTNTHETCNKYDKNDTAIIKTAQQYDSKRTTL
SVSTLGKIKRSSAEKSIGTMINKFEKKKKLTVLERSQLDWKIFKQDEGID
ELLCSHNKGKDGYLDRQDFLERTDLRQFEMEKKLRLSRRPY*

RE36623.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:44:49
Subject Length Description Subject Range Query Range Score Percent Strand
Yeti-PB 241 CG40218-PB 1..241 1..241 1261 100 Plus
Yeti-PA 241 CG40218-PA 1..241 1..241 1261 100 Plus