Clone RE36666 Report

Search the DGRC for RE36666

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:366
Well:66
Vector:pFlc-1
Associated Gene/TranscriptCG1092-RC
Protein status:RE36666.pep: gold
Preliminary Size:1388
Sequenced Size:1324

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1092 2002-01-01 Sim4 clustering to Release 2
CG1092 2002-02-22 Blastp of sequenced clone
CG1092 2003-01-01 Sim4 clustering to Release 3
CG1092 2008-04-29 Release 5.5 accounting
CG1092 2008-08-15 Release 5.9 accounting
CG1092 2008-12-18 5.12 accounting

Clone Sequence Records

RE36666.complete Sequence

1324 bp (1324 high quality bases) assembled on 2002-02-22

GenBank Submission: AY089624

> RE36666.complete
AGAGTGACTTGAGCTCTGCGATGACAACCTCAAGTCTTGCAATCGGCGCA
TCCGTAGCGCTTATTCTGTTGATGTTGACTGGTTCAGGGCATTGCCAAGT
GGGATACGTGCGGCACCTGTCGGAGCTGCGGATAAGGGAACTTGAAAAAT
TGTCGGTTCGTATACAGGGCTCCATCAACACCGAAAAGTATGCCTGCGAG
AGCTATTTCGACTACGTCTGTAGCCGCAATCGACCCCTCTTTTCGATCAT
GGGACACATGCCGCAAATGGGCGATCTTATGCAGTTGCTGACCGAGCTGC
AGAACGATCCAGAGCCATTCGAGGCTAAGCAGAAGACGCTGGACTTCTTC
ATCTCCTGCAACGTGCACCACGCGCTGGAAGACTGCTATCGTGAGACCTA
TGAGTATTTCAAGCCACTTTTCGGGTATATAGTTACAAAAAACATGCTCA
ATGGAGAATCCCACGAGCTGGATGACTTTCTGGGCATTTTGGACCGCTTC
GTCGTCAGGTTTCAGAAGGACAGAGAGTCGAATCCCATTCTCAGCAAGCT
GGCCACGTATAAGCAGAAATTTAAAACGCCGCGAGTCTACTTCCATGCTA
GAGACCTGAGCCGGGAGTACAAGGACCTGCGGATCTACCGGGAGAGCTAC
GAACACAACGTTCGCAATCTGGAGCAGCACAGAAAACTGAATTCAACATA
CGAATTGGGGGTTCAGCGCACCATGCTGGATTGGAGCATGTACCTCTTTC
AGAGCCGCAACAAGCCCATGTCCTACTTCTACTCCACGTTTACGGTCCAT
TTGTACATGATGCTTTTTAATAGTCTGGAGCGTCAGCGTGATTTCACGCG
GTTTCGCGAAGATGTGGAGTGTTTAAGGCTGCCGCAGTTCGTTAATGTTC
TGGATGAGGCCAGAATGCTGGCTGTGATCTACTTAAAGAGCTTCCGAGCG
GCCTGGATAGACTACAGCGCCTGGATCAACTCGCCTCCACAGAACAGTGG
GATATACGATCAGGAAAATGGCGTCCTTCAAAAGTACCATCTTGACAACA
AGCGTATATTTTTTACTCTTTACGCTCAGAACTTCTGTGAGTTTGGGAAG
GATCTGGCCGAGCATGTCTTCTATCTGGGCCTTAAACAGAACAAGGACTT
TTACGACATATACTCTTGTGGATTCCAAACGGAAAACCCTATGACTTGTG
TTTAAAAGATCAAGACCATTTCTACCATATATTTAGTTTACGAGATACAA
TAAAAGCAATAACATTCTCATAAAGGTGTACAAACCATTTGAAAAAAATG
GCTTTCACCAAAAAAAAAAAAAAA

RE36666.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:25:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG1092.b 1608 CG1092.b 4..1316 3..1315 6550 99.9 Plus
CG1092.a 1816 CG1092.a 212..1524 3..1315 6550 99.9 Plus
CG1092-RA 1816 CG1092-RA 212..1524 3..1315 6550 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:43:40
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 92981..94037 252..1308 5285 100 Plus
chr3R 27901430 chr3R 92677..92927 3..253 1255 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:52:33 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:43:38
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4267260..4268323 252..1315 5305 99.9 Plus
3R 32079331 3R 4266956..4267206 3..253 1255 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:54:30
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 4008091..4009154 252..1315 5305 99.9 Plus
3R 31820162 3R 4007787..4008037 3..253 1255 100 Plus
Blast to na_te.dros performed on 2019-03-15 22:43:38 has no hits.

RE36666.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:44:48 Download gff for RE36666.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 92675..92926 1..252 99 -> Plus
chr3R 92982..94037 253..1309 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:12:44 Download gff for RE36666.complete
Subject Subject Range Query Range Percent Splice Strand
CG1092-RA 1..1134 72..1205 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:38:19 Download gff for RE36666.complete
Subject Subject Range Query Range Percent Splice Strand
CG1092-RA 1..1134 72..1205 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:30:56 Download gff for RE36666.complete
Subject Subject Range Query Range Percent Splice Strand
CG1092-RC 1..1185 21..1205 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:08:46 Download gff for RE36666.complete
Subject Subject Range Query Range Percent Splice Strand
CG1092-RA 1..1134 72..1205 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:33:25 Download gff for RE36666.complete
Subject Subject Range Query Range Percent Splice Strand
CG1092-RC 1..1185 21..1205 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:03:24 Download gff for RE36666.complete
Subject Subject Range Query Range Percent Splice Strand
CG1092-RA 3..1308 3..1309 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:38:19 Download gff for RE36666.complete
Subject Subject Range Query Range Percent Splice Strand
CG1092-RA 3..1308 3..1309 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:30:56 Download gff for RE36666.complete
Subject Subject Range Query Range Percent Splice Strand
CG1092-RC 185..1492 1..1308 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:08:46 Download gff for RE36666.complete
Subject Subject Range Query Range Percent Splice Strand
CG1092-RA 3..1308 3..1309 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:33:25 Download gff for RE36666.complete
Subject Subject Range Query Range Percent Splice Strand
CG1092-RC 185..1492 1..1308 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:44:48 Download gff for RE36666.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4267261..4268316 253..1309 99   Plus
3R 4266954..4267205 1..252 99 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:44:48 Download gff for RE36666.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4267261..4268316 253..1309 99   Plus
3R 4266954..4267205 1..252 99 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:44:48 Download gff for RE36666.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4267261..4268316 253..1309 99   Plus
3R 4266954..4267205 1..252 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:30:56 Download gff for RE36666.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 92676..92927 1..252 99 -> Plus
arm_3R 92983..94038 253..1309 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:42:53 Download gff for RE36666.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4007785..4008036 1..252 99 -> Plus
3R 4008092..4009147 253..1309 99   Plus

RE36666.hyp Sequence

Translation from 2 to 1204

> RE36666.hyp
SDLSSAMTTSSLAIGASVALILLMLTGSGHCQVGYVRHLSELRIRELEKL
SVRIQGSINTEKYACESYFDYVCSRNRPLFSIMGHMPQMGDLMQLLTELQ
NDPEPFEAKQKTLDFFISCNVHHALEDCYRETYEYFKPLFGYIVTKNMLN
GESHELDDFLGILDRFVVRFQKDRESNPILSKLATYKQKFKTPRVYFHAR
DLSREYKDLRIYRESYEHNVRNLEQHRKLNSTYELGVQRTMLDWSMYLFQ
SRNKPMSYFYSTFTVHLYMMLFNSLERQRDFTRFREDVECLRLPQFVNVL
DEARMLAVIYLKSFRAAWIDYSAWINSPPQNSGIYDQENGVLQKYHLDNK
RIFFTLYAQNFCEFGKDLAEHVFYLGLKQNKDFYDIYSCGFQTENPMTCV
*

RE36666.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:54:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG1092-PD 394 CG1092-PD 1..394 7..400 2097 100 Plus
CG1092-PC 394 CG1092-PC 1..394 7..400 2097 100 Plus

RE36666.pep Sequence

Translation from 20 to 1204

> RE36666.pep
MTTSSLAIGASVALILLMLTGSGHCQVGYVRHLSELRIRELEKLSVRIQG
SINTEKYACESYFDYVCSRNRPLFSIMGHMPQMGDLMQLLTELQNDPEPF
EAKQKTLDFFISCNVHHALEDCYRETYEYFKPLFGYIVTKNMLNGESHEL
DDFLGILDRFVVRFQKDRESNPILSKLATYKQKFKTPRVYFHARDLSREY
KDLRIYRESYEHNVRNLEQHRKLNSTYELGVQRTMLDWSMYLFQSRNKPM
SYFYSTFTVHLYMMLFNSLERQRDFTRFREDVECLRLPQFVNVLDEARML
AVIYLKSFRAAWIDYSAWINSPPQNSGIYDQENGVLQKYHLDNKRIFFTL
YAQNFCEFGKDLAEHVFYLGLKQNKDFYDIYSCGFQTENPMTCV*

RE36666.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 00:04:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18200-PA 392 GF18200-PA 2..392 4..394 1694 78 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 00:04:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12252-PA 394 GG12252-PA 1..394 1..394 2008 93.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 00:04:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19089-PA 391 GH19089-PA 2..391 8..394 1423 67.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:05:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG1092-PD 394 CG1092-PD 1..394 1..394 2097 100 Plus
CG1092-PC 394 CG1092-PC 1..394 1..394 2097 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 00:04:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10851-PA 390 GI10851-PA 4..390 10..394 1419 66.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 00:04:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12312-PA 391 GL12312-PA 3..391 5..394 1537 73.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 00:04:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10643-PA 391 GA10643-PA 3..391 5..394 1545 73.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 00:04:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10741-PA 394 GM10741-PA 1..394 1..394 2094 97.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 00:04:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19713-PA 394 GD19713-PA 1..394 1..394 2083 97.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 00:04:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14458-PA 390 GJ14458-PA 9..390 15..394 1414 66 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 00:04:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25402-PA 394 GE25402-PA 1..394 1..394 1965 90.6 Plus