Clone RE36848 Report

Search the DGRC for RE36848

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:368
Well:48
Vector:pFlc-1
Associated Gene/TranscriptCsl4-RA
Protein status:RE36848.pep: gold
Preliminary Size:847
Sequenced Size:1122

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6249 2002-01-01 Sim4 clustering to Release 2
CG6249 2002-04-04 Blastp of sequenced clone
CG6249 2003-01-01 Sim4 clustering to Release 3
Csl4 2008-04-29 Release 5.5 accounting
Csl4 2008-08-15 Release 5.9 accounting
Csl4 2008-12-18 5.12 accounting

Clone Sequence Records

RE36848.complete Sequence

1122 bp (1122 high quality bases) assembled on 2002-04-04

GenBank Submission: AY095082

> RE36848.complete
GGTTGGAAAACGCTTACGCCAGCGGTGCACACCGGGCAAAATAGTCGACA
TAGCTTTTTATACTCACATACAAAAGTTAATTACAGAACAAAGCAGGAAT
GATATAAGATGCCTTTAAATCTTGTGATATTAAGAAAGTTGTCGCTAGCA
TTTTAACAATTGCCACATATTGGTCACACTGCATTGCACGTGTGTTTCCA
TTTGTTGATGCGGCTTTATTATTTAGTTTATTTTTTAAAATAAAAACTGT
CTCTGGCCTAAAAATGAGTGAACAGCAGGATGAGACTGTAGTCTGCCTGC
CCGGGGAGCGACTCTGCAGAACCGAGGACAGCATAGTCCTGGGCATAGGC
ACCTACGAGCAGAATGGCTACATTTACGCCTCCAAGTCTGGAATTGTCAA
CATCGAAGATTCGGGTGATAAATGCCAGGTGGTTAGTGTGCATAAGCCCG
GATTTCATCTAACCATCCCAGCCACCGGAGACGTGGTCACAGCCAGAGTT
CTCGTCACAACTCCAAAATTCGCCAAGTGCGCCATTTTCTGCGTACGAAA
TGTGCTGCTGGAAAGCAGCTACCGCGGACTTCTGCGCAAGGAGGATGTCC
GGGAGACCGAAAAAGATCGCGTCGATATCTACAAGTCCTTCCGGCCGGGC
GATGTCATCCTGGCGAGGGTCATTAACCAACTGGAGCAGTCCTTCCTCCT
GACCACCGCCGAAAATGAACTCGGCGTGGTCATCGCCTATGCCAGTGATT
ACCGGAAGACCCGGGTGCCCATGGTGCCGGTCGGCTGGAGCGAGATGCAG
TGCCCCCAGACCACGATCAAGGAGCCACGGAAAGTGGCTAAAGTTCTGCC
TGAGAGTTCAATAAATGCTGTGAAATAAGGTCAATCGCATGTTAATCAGA
AGCTTAAATTCATTTGTGGAACTAAAAATGTTTTAGTAAGTGATTATTAG
CCAAATAATTATATGTCTTGGCAACCAGAGGACGCTGAATATGGATACAG
GTTTATGTTAGCATTTTATTTCCATAGCAACGTTGATAAGTAGCTATTTG
ACAGTTTACATTATTTCAAATCATTAAATAAATCTATAATTAAGTTGTAA
AAGTTCAAAAAAAAAAAAAAAA

RE36848.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:15:50
Subject Length Description Subject Range Query Range Score Percent Strand
Csl4-RA 1132 Csl4-RA 1..1109 2..1110 5530 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 20:16:04
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 11121329..11122012 1106..423 3420 100 Minus
chr2L 23010047 chr2L 11122067..11122400 422..89 1670 100 Minus
chr2L 23010047 chr2L 11122461..11122547 88..2 420 98.9 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:52:39 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 20:16:02
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11122570..11123257 1110..423 3440 100 Minus
2L 23513712 2L 11123312..11123645 422..89 1670 100 Minus
2L 23513712 2L 11123706..11123792 88..2 420 98.9 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:45:55
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11122570..11123257 1110..423 3440 100 Minus
2L 23513712 2L 11123312..11123645 422..89 1670 100 Minus
2L 23513712 2L 11123706..11123792 88..2 420 98.8 Minus
Blast to na_te.dros performed on 2019-03-15 20:16:03 has no hits.

RE36848.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 20:16:41 Download gff for RE36848.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 11121329..11122012 423..1106 100 <- Minus
chr2L 11122067..11122400 89..422 90 <- Minus
chr2L 11122461..11122547 1..88 97   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:12:48 Download gff for RE36848.complete
Subject Subject Range Query Range Percent Splice Strand
Csl4-RA 1..615 264..878 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:08:58 Download gff for RE36848.complete
Subject Subject Range Query Range Percent Splice Strand
Csl4-RA 1..615 264..878 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 05:10:13 Download gff for RE36848.complete
Subject Subject Range Query Range Percent Splice Strand
Csl4-RA 1..615 264..878 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:55:54 Download gff for RE36848.complete
Subject Subject Range Query Range Percent Splice Strand
Csl4-RA 1..615 264..878 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:19:08 Download gff for RE36848.complete
Subject Subject Range Query Range Percent Splice Strand
Csl4-RA 1..615 264..878 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:44:33 Download gff for RE36848.complete
Subject Subject Range Query Range Percent Splice Strand
Csl4-RA 1..1105 2..1106 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:08:58 Download gff for RE36848.complete
Subject Subject Range Query Range Percent Splice Strand
Csl4-RA 1..1105 2..1106 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:10:13 Download gff for RE36848.complete
Subject Subject Range Query Range Percent Splice Strand
Csl4-RA 1..947 160..1106 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:55:55 Download gff for RE36848.complete
Subject Subject Range Query Range Percent Splice Strand
Csl4-RA 1..1105 2..1106 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:19:08 Download gff for RE36848.complete
Subject Subject Range Query Range Percent Splice Strand
Csl4-RA 1..940 167..1106 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:16:41 Download gff for RE36848.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11122574..11123257 423..1106 100 <- Minus
2L 11123312..11123645 89..422 100 <- Minus
2L 11123706..11123792 1..88 97   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:16:41 Download gff for RE36848.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11122574..11123257 423..1106 100 <- Minus
2L 11123312..11123645 89..422 100 <- Minus
2L 11123706..11123792 1..88 97   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:16:41 Download gff for RE36848.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11122574..11123257 423..1106 100 <- Minus
2L 11123312..11123645 89..422 100 <- Minus
2L 11123706..11123792 1..88 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:10:13 Download gff for RE36848.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 11122574..11123257 423..1106 100 <- Minus
arm_2L 11123312..11123645 89..422 100 <- Minus
arm_2L 11123706..11123792 1..88 97   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:28:17 Download gff for RE36848.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11122574..11123257 423..1106 100 <- Minus
2L 11123312..11123645 89..422 100 <- Minus
2L 11123706..11123792 1..88 97   Minus

RE36848.pep Sequence

Translation from 263 to 877

> RE36848.pep
MSEQQDETVVCLPGERLCRTEDSIVLGIGTYEQNGYIYASKSGIVNIEDS
GDKCQVVSVHKPGFHLTIPATGDVVTARVLVTTPKFAKCAIFCVRNVLLE
SSYRGLLRKEDVRETEKDRVDIYKSFRPGDVILARVINQLEQSFLLTTAE
NELGVVIAYASDYRKTRVPMVPVGWSEMQCPQTTIKEPRKVAKVLPESSI
NAVK*

RE36848.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 02:20:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14226-PA 202 GF14226-PA 1..202 1..202 966 88.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 02:20:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10323-PA 204 GG10323-PA 1..204 1..204 1030 95.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 02:20:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10967-PA 214 GH10967-PA 11..210 1..200 916 83 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:03:32
Subject Length Description Subject Range Query Range Score Percent Strand
Csl4-PA 204 CG6249-PA 1..204 1..204 1045 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 02:20:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18151-PA 214 GI18151-PA 11..214 1..204 954 83.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 02:20:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18587-PA 205 GL18587-PA 1..205 1..204 986 90.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 02:20:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19469-PA 205 GA19469-PA 1..205 1..204 990 90.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 02:20:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11135-PA 204 GM11135-PA 1..204 1..204 1061 97.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 02:20:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22191-PA 204 GD22191-PA 1..204 1..204 1063 97.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 02:20:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14547-PA 214 GJ14547-PA 12..214 2..204 921 82.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 02:20:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15242-PA 213 GK15242-PA 12..213 3..204 904 82.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 02:20:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\Csl4-PA 203 GE12981-PA 4..203 5..204 1016 95.5 Plus

RE36848.hyp Sequence

Translation from 263 to 877

> RE36848.hyp
MSEQQDETVVCLPGERLCRTEDSIVLGIGTYEQNGYIYASKSGIVNIEDS
GDKCQVVSVHKPGFHLTIPATGDVVTARVLVTTPKFAKCAIFCVRNVLLE
SSYRGLLRKEDVRETEKDRVDIYKSFRPGDVILARVINQLEQSFLLTTAE
NELGVVIAYASDYRKTRVPMVPVGWSEMQCPQTTIKEPRKVAKVLPESSI
NAVK*

RE36848.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:03:58
Subject Length Description Subject Range Query Range Score Percent Strand
Csl4-PA 204 CG6249-PA 1..204 1..204 1045 100 Plus