BDGP Sequence Production Resources |
Search the DGRC for RE36848
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 368 |
Well: | 48 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Csl4-RA |
Protein status: | RE36848.pep: gold |
Preliminary Size: | 847 |
Sequenced Size: | 1122 |
Gene | Date | Evidence |
---|---|---|
CG6249 | 2002-01-01 | Sim4 clustering to Release 2 |
CG6249 | 2002-04-04 | Blastp of sequenced clone |
CG6249 | 2003-01-01 | Sim4 clustering to Release 3 |
Csl4 | 2008-04-29 | Release 5.5 accounting |
Csl4 | 2008-08-15 | Release 5.9 accounting |
Csl4 | 2008-12-18 | 5.12 accounting |
1122 bp (1122 high quality bases) assembled on 2002-04-04
GenBank Submission: AY095082
> RE36848.complete GGTTGGAAAACGCTTACGCCAGCGGTGCACACCGGGCAAAATAGTCGACA TAGCTTTTTATACTCACATACAAAAGTTAATTACAGAACAAAGCAGGAAT GATATAAGATGCCTTTAAATCTTGTGATATTAAGAAAGTTGTCGCTAGCA TTTTAACAATTGCCACATATTGGTCACACTGCATTGCACGTGTGTTTCCA TTTGTTGATGCGGCTTTATTATTTAGTTTATTTTTTAAAATAAAAACTGT CTCTGGCCTAAAAATGAGTGAACAGCAGGATGAGACTGTAGTCTGCCTGC CCGGGGAGCGACTCTGCAGAACCGAGGACAGCATAGTCCTGGGCATAGGC ACCTACGAGCAGAATGGCTACATTTACGCCTCCAAGTCTGGAATTGTCAA CATCGAAGATTCGGGTGATAAATGCCAGGTGGTTAGTGTGCATAAGCCCG GATTTCATCTAACCATCCCAGCCACCGGAGACGTGGTCACAGCCAGAGTT CTCGTCACAACTCCAAAATTCGCCAAGTGCGCCATTTTCTGCGTACGAAA TGTGCTGCTGGAAAGCAGCTACCGCGGACTTCTGCGCAAGGAGGATGTCC GGGAGACCGAAAAAGATCGCGTCGATATCTACAAGTCCTTCCGGCCGGGC GATGTCATCCTGGCGAGGGTCATTAACCAACTGGAGCAGTCCTTCCTCCT GACCACCGCCGAAAATGAACTCGGCGTGGTCATCGCCTATGCCAGTGATT ACCGGAAGACCCGGGTGCCCATGGTGCCGGTCGGCTGGAGCGAGATGCAG TGCCCCCAGACCACGATCAAGGAGCCACGGAAAGTGGCTAAAGTTCTGCC TGAGAGTTCAATAAATGCTGTGAAATAAGGTCAATCGCATGTTAATCAGA AGCTTAAATTCATTTGTGGAACTAAAAATGTTTTAGTAAGTGATTATTAG CCAAATAATTATATGTCTTGGCAACCAGAGGACGCTGAATATGGATACAG GTTTATGTTAGCATTTTATTTCCATAGCAACGTTGATAAGTAGCTATTTG ACAGTTTACATTATTTCAAATCATTAAATAAATCTATAATTAAGTTGTAA AAGTTCAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Csl4-RA | 1132 | Csl4-RA | 1..1109 | 2..1110 | 5530 | 99.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2L | 23010047 | chr2L | 11121329..11122012 | 1106..423 | 3420 | 100 | Minus |
chr2L | 23010047 | chr2L | 11122067..11122400 | 422..89 | 1670 | 100 | Minus |
chr2L | 23010047 | chr2L | 11122461..11122547 | 88..2 | 420 | 98.9 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 11122570..11123257 | 1110..423 | 3440 | 100 | Minus |
2L | 23513712 | 2L | 11123312..11123645 | 422..89 | 1670 | 100 | Minus |
2L | 23513712 | 2L | 11123706..11123792 | 88..2 | 420 | 98.9 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 11122570..11123257 | 1110..423 | 3440 | 100 | Minus |
2L | 23513712 | 2L | 11123312..11123645 | 422..89 | 1670 | 100 | Minus |
2L | 23513712 | 2L | 11123706..11123792 | 88..2 | 420 | 98.8 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 11121329..11122012 | 423..1106 | 100 | <- | Minus |
chr2L | 11122067..11122400 | 89..422 | 90 | <- | Minus |
chr2L | 11122461..11122547 | 1..88 | 97 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Csl4-RA | 1..615 | 264..878 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Csl4-RA | 1..615 | 264..878 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Csl4-RA | 1..615 | 264..878 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Csl4-RA | 1..615 | 264..878 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Csl4-RA | 1..615 | 264..878 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Csl4-RA | 1..1105 | 2..1106 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Csl4-RA | 1..1105 | 2..1106 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Csl4-RA | 1..947 | 160..1106 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Csl4-RA | 1..1105 | 2..1106 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Csl4-RA | 1..940 | 167..1106 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 11122574..11123257 | 423..1106 | 100 | <- | Minus |
2L | 11123312..11123645 | 89..422 | 100 | <- | Minus |
2L | 11123706..11123792 | 1..88 | 97 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 11122574..11123257 | 423..1106 | 100 | <- | Minus |
2L | 11123312..11123645 | 89..422 | 100 | <- | Minus |
2L | 11123706..11123792 | 1..88 | 97 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 11122574..11123257 | 423..1106 | 100 | <- | Minus |
2L | 11123312..11123645 | 89..422 | 100 | <- | Minus |
2L | 11123706..11123792 | 1..88 | 97 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 11122574..11123257 | 423..1106 | 100 | <- | Minus |
arm_2L | 11123312..11123645 | 89..422 | 100 | <- | Minus |
arm_2L | 11123706..11123792 | 1..88 | 97 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 11122574..11123257 | 423..1106 | 100 | <- | Minus |
2L | 11123312..11123645 | 89..422 | 100 | <- | Minus |
2L | 11123706..11123792 | 1..88 | 97 | Minus |
Translation from 263 to 877
> RE36848.pep MSEQQDETVVCLPGERLCRTEDSIVLGIGTYEQNGYIYASKSGIVNIEDS GDKCQVVSVHKPGFHLTIPATGDVVTARVLVTTPKFAKCAIFCVRNVLLE SSYRGLLRKEDVRETEKDRVDIYKSFRPGDVILARVINQLEQSFLLTTAE NELGVVIAYASDYRKTRVPMVPVGWSEMQCPQTTIKEPRKVAKVLPESSI NAVK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF14226-PA | 202 | GF14226-PA | 1..202 | 1..202 | 966 | 88.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG10323-PA | 204 | GG10323-PA | 1..204 | 1..204 | 1030 | 95.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH10967-PA | 214 | GH10967-PA | 11..210 | 1..200 | 916 | 83 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Csl4-PA | 204 | CG6249-PA | 1..204 | 1..204 | 1045 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI18151-PA | 214 | GI18151-PA | 11..214 | 1..204 | 954 | 83.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL18587-PA | 205 | GL18587-PA | 1..205 | 1..204 | 986 | 90.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA19469-PA | 205 | GA19469-PA | 1..205 | 1..204 | 990 | 90.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM11135-PA | 204 | GM11135-PA | 1..204 | 1..204 | 1061 | 97.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD22191-PA | 204 | GD22191-PA | 1..204 | 1..204 | 1063 | 97.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ14547-PA | 214 | GJ14547-PA | 12..214 | 2..204 | 921 | 82.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK15242-PA | 213 | GK15242-PA | 12..213 | 3..204 | 904 | 82.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\Csl4-PA | 203 | GE12981-PA | 4..203 | 5..204 | 1016 | 95.5 | Plus |
Translation from 263 to 877
> RE36848.hyp MSEQQDETVVCLPGERLCRTEDSIVLGIGTYEQNGYIYASKSGIVNIEDS GDKCQVVSVHKPGFHLTIPATGDVVTARVLVTTPKFAKCAIFCVRNVLLE SSYRGLLRKEDVRETEKDRVDIYKSFRPGDVILARVINQLEQSFLLTTAE NELGVVIAYASDYRKTRVPMVPVGWSEMQCPQTTIKEPRKVAKVLPESSI NAVK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Csl4-PA | 204 | CG6249-PA | 1..204 | 1..204 | 1045 | 100 | Plus |