BDGP Sequence Production Resources |
Search the DGRC for RE36854
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 368 |
Well: | 54 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Rpn12-RA |
Protein status: | RE36854.pep: gold |
Preliminary Size: | 989 |
Sequenced Size: | 1057 |
Gene | Date | Evidence |
---|---|---|
CG4157 | 2002-01-01 | Sim4 clustering to Release 2 |
CG4157 | 2002-02-22 | Blastp of sequenced clone |
CG4157 | 2003-01-01 | Sim4 clustering to Release 3 |
Rpn12 | 2008-04-29 | Release 5.5 accounting |
Rpn12 | 2008-08-15 | Release 5.9 accounting |
Rpn12 | 2008-12-18 | 5.12 accounting |
1057 bp (1057 high quality bases) assembled on 2002-02-22
GenBank Submission: AY084160
> RE36854.complete TGCGATAACGATTGTCCTATCGCTTTACCCTACAACAATTGCCATCTCTA AAAAAAAGCGAAAATCATCTTGGGAATTTGCAGAAAACATTTAAGCTTCA ATATACCAATCTAAAGAATGGCCAACGTGGAATCGCTGTACAAAGAACTG ACCGCCGAGTGGTCAAAGCGGCCACCAAACACCGTCAAATGCGGCCAGCT GCTGGATCAACTGAAAGTAGCGCTCGTGAAGATGGCCTTCCTGCCGACGG ACGGAAACGATGCCCAGAGCTCCAAGAAGCAATTGATCCTGGCTAGGAGC GTGCTTGAGGTGGCCGTGGAGCATAGCGTGCTCAGCAAGGACCTGCTCGC CTTCGAGCGCTACATGGCGCAGCTGAAGTGCTATTACTATGACTACGCTA AGATCATTGGCGAATCGGAGAGCAAGTATAAGCTGCTCGGTCTGAATCTG CTGTACCTCTTGTCTGGCAACCGGGTATCCGACTTTCACACGGAACTGGA GCTGCTCTCCGTGGACGTCATCCAGCACAATCAGTTCATTCGGCCCATCC TGGCGCTCGAGCAGTACATCATGGAGGGACGCTACAACAAGATCTTTCAG GCCAAGTCGACGGTGCCCGTCGAGGTGTATAGCTACTTTATGGATCTTCT GTTGGAAACGGTGCGCGATGAAATTGGTGCCTGCATCGAGAAGTCCTACG ACAAGATCTCCGCCAAGGATGCAGCCAAGCGGCTCAACCTGCGCGTCCCC GACGAGATCAAGGCCTTCGGCGCGAAGCGTCAATGGAAACTGGAGGCTAG CGGCGACTACAGCTTCACGGACCGTAGCGTCAAACCCAAGGAGCTCCTGC CCTCCGAGGAACTCGCCGAGCAGGTGCTCAGCTACGCCCGCGACCTCGAG ATGATAGTTTAAGTCGCAAAGCAGCCGTTAATAAACGACAGAGTAAGGTT AAGAAAACAGTTCTAACACGCTGGATACCACAATTTTTATAATAATATGT AATTACATTGAAAACAACAAGAAATTAAATTTAAAACTCCCAAAAAAAAA AAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Rpn12-RA | 1040 | Rpn12-RA | 3..1040 | 3..1040 | 5190 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 16572754..16573791 | 3..1040 | 5190 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 16582985..16584022 | 3..1040 | 5190 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 16576085..16577122 | 3..1040 | 5190 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 16572752..16573791 | 1..1041 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rpn12-RA | 1..795 | 118..912 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rpn12-RA | 1..795 | 118..912 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rpn12-RA | 1..795 | 118..912 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rpn12-RA | 1..795 | 118..912 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rpn12-RA | 1..795 | 118..912 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rpn12-RA | 1..1039 | 1..1039 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rpn12-RA | 1..1040 | 1..1040 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rpn12-RA | 1..995 | 46..1040 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rpn12-RA | 1..1039 | 1..1039 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rpn12-RA | 1..995 | 46..1040 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 16582983..16584022 | 1..1041 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 16582983..16584022 | 1..1041 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 16582983..16584022 | 1..1041 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 16576083..16577122 | 1..1041 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 16576083..16577122 | 1..1041 | 99 | Plus |
Translation from 117 to 911
> RE36854.pep MANVESLYKELTAEWSKRPPNTVKCGQLLDQLKVALVKMAFLPTDGNDAQ SSKKQLILARSVLEVAVEHSVLSKDLLAFERYMAQLKCYYYDYAKIIGES ESKYKLLGLNLLYLLSGNRVSDFHTELELLSVDVIQHNQFIRPILALEQY IMEGRYNKIFQAKSTVPVEVYSYFMDLLLETVRDEIGACIEKSYDKISAK DAAKRLNLRVPDEIKAFGAKRQWKLEASGDYSFTDRSVKPKELLPSEELA EQVLSYARDLEMIV*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF23919-PA | 264 | GF23919-PA | 1..264 | 1..264 | 1222 | 94.3 | Plus |
Dana\GF10751-PA | 262 | GF10751-PA | 3..262 | 6..264 | 669 | 50.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG13563-PA | 264 | GG13563-PA | 1..264 | 1..264 | 1366 | 98.1 | Plus |
Dere\GG13696-PA | 262 | GG13696-PA | 1..262 | 4..264 | 666 | 50 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH15898-PA | 264 | GH15898-PA | 1..264 | 1..264 | 1184 | 89.8 | Plus |
Dgri\GH16677-PA | 264 | GH16677-PA | 6..264 | 9..264 | 667 | 48.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Rpn12-PA | 264 | CG4157-PA | 1..264 | 1..264 | 1328 | 100 | Plus |
Rpn12R-PA | 262 | CG11552-PA | 1..262 | 4..264 | 660 | 49.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI16550-PA | 264 | GI16550-PA | 1..264 | 1..264 | 1169 | 88.6 | Plus |
Dmoj\GI11363-PA | 264 | GI11363-PA | 1..264 | 4..264 | 660 | 47.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL17868-PA | 264 | GL17868-PA | 1..264 | 1..264 | 1156 | 88.3 | Plus |
Dper\GL22312-PA | 263 | GL22312-PA | 1..263 | 4..264 | 672 | 47.9 | Plus |
Dper\GL21520-PA | 789 | GL21520-PA | 1..176 | 4..178 | 481 | 50.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA17993-PA | 264 | GA17993-PA | 1..264 | 1..264 | 1156 | 88.3 | Plus |
Dpse\GA27448-PA | 263 | GA27448-PA | 1..263 | 4..264 | 674 | 47.9 | Plus |
Dpse\GA26312-PA | 263 | GA26312-PA | 1..263 | 4..264 | 671 | 48.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM25643-PA | 264 | GM25643-PA | 1..264 | 1..264 | 1373 | 98.9 | Plus |
Dsec\GM24516-PA | 262 | GM24516-PA | 1..262 | 4..264 | 679 | 50 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD14646-PA | 264 | GD14646-PA | 1..264 | 1..264 | 1377 | 99.2 | Plus |
Dsim\GD12587-PA | 262 | GD12587-PA | 1..262 | 4..264 | 679 | 50 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ12802-PA | 264 | GJ12802-PA | 1..264 | 1..264 | 1188 | 90.2 | Plus |
Dvir\GJ11618-PA | 264 | GJ11618-PA | 1..264 | 4..264 | 648 | 49.2 | Plus |
Translation from 117 to 911
> RE36854.hyp MANVESLYKELTAEWSKRPPNTVKCGQLLDQLKVALVKMAFLPTDGNDAQ SSKKQLILARSVLEVAVEHSVLSKDLLAFERYMAQLKCYYYDYAKIIGES ESKYKLLGLNLLYLLSGNRVSDFHTELELLSVDVIQHNQFIRPILALEQY IMEGRYNKIFQAKSTVPVEVYSYFMDLLLETVRDEIGACIEKSYDKISAK DAAKRLNLRVPDEIKAFGAKRQWKLEASGDYSFTDRSVKPKELLPSEELA EQVLSYARDLEMIV*