Clone RE36966 Report

Search the DGRC for RE36966

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:369
Well:66
Vector:pFlc-1
Associated Gene/TranscriptCG7739-RA
Protein status:RE36966.pep: gold
Preliminary Size:1901
Sequenced Size:2295

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7739 2002-01-01 Sim4 clustering to Release 2
CG7739 2002-01-03 Blastp of sequenced clone
CG7739 2003-01-01 Sim4 clustering to Release 3
CG7739 2008-04-29 Release 5.5 accounting
CG7739 2008-08-15 Release 5.9 accounting
CG7739 2008-12-18 5.12 accounting

Clone Sequence Records

RE36966.complete Sequence

2295 bp (2295 high quality bases) assembled on 2002-01-03

GenBank Submission: AY075477

> RE36966.complete
GCTGTCAACAAAATATCGCTCAGCCCATCTGATTCACTATTGATTTTCTT
CAATAACAAAGCAGAGGAAAGTAGACAAAAAATAACGCAATTTGGGAAAT
ACAAAACTTGGAAATTCTGAAATTCGGAATGACGAGATGCAGTCTTGTAT
TGGGTCTCCTGCTGGCCCTGGGCAACCTGATTCACGCCAGTAATATCACT
GATAAAGTTTTTGCAGACATTAAAGAGGGCATTGTGGCAGCTTTCGGAGA
TTTCAATTCCGACGAACTCACGGATGTTTTTGTAATTCGCGATGGGATGA
AGAGGTTGCAGATACTCTTCGGGCACTATACGGAGCCTCTGCTTAAACTG
GGACCAGACTGCCAGTACGGAGATAAGACCATTGTTAGTGTTATACCTGG
AGATTTTGATGGCGACGCCCTGATGGACGTGCTGGTAAACCTGAAGGGGA
AGGACGAGGAGACCTACGAGGTGCACATCAACTGGGGCAATACCACCGAA
CTGAAGTGCTCCAATAAGTCACTTTTTACCAGTAAAGGAGAGGTAATGGC
CCTGGACTTTAACCGCGATATGATTATCGATTTATACGGACTTGATTCTG
CGGAAAGGCGTACATTCTGGATATTCAACAGCAGTAGGCTTCCGCCGGAG
GCTGTACACCAAGCAGAACCCACGGAGTTCAAGGAAAACTTAAGCATCCC
CAATGCAAATGCCTATCTCGATCTGAACGGCGACTTCTTGGCCGATCTGT
TCTTGCAGACGAAGAGCTCCTACGAAATATGGCACGGCATCAACGAGCGA
GACAAGCAGGAGAATTTCAGCTACCAATATCAAATTAAGTTCCAGCCGAT
CGGAGGCAATGATTATTACATCGGTCAGGCTGTGTTCATGGACTTCGAGC
TAAAGGGCGTGCAGAACATTGTGGTTCCGTTTTGCATCCTATCCAATTGC
CGGAACTCCTCAATCATGGTGCATGATGGCACAGATTTTCGTAATCTCCA
TGTAAACTTCCGCGATCCACAGGGCGTCACTTGGGCCTTTGTGCCGCCCG
TGTCAGATGATGTTTACTTGCGAACCATTACGGCAAGGAGTGGGGACTTC
AACCTGGATGGGTATCCTGATCTCCTGGTTACTTTGCAGCCACTAAATGT
GGATAAGCCAGTGATGCAGACGTTCCTGCTAGAGAATGTTCCTTGCACAA
CGTGTAACAAGCCGCTAAAGCGCACTTTCGAGGTACGCTGGAACGCCCTT
TCGCCAATGGGCAACAACACGGTGGCAGGTGCATTCTACGACTTCTACCA
AGACGGTGTGCTCGATGTGATTCTTATTCGAAAAGATGGAAAGGGCAAAT
ACCAGCCACTCGCTTTCCGGAACACGCTTGACTATGACGCGAACTTTGTG
AAGGTGATTGTGCTAACTGGCTTGGATAACAAGCAGAACCCGGAGAGACG
CACTCCTTTGGGTAGGAAAAAGCGAACCTATGGCACTAACTTGCCAGGAC
CACGGATCACCTACAGTACCACTACTCAGGATGGTGATCAGCAGTGCGGC
AGTAGCGTTCAACTACCGCAGGCCTCGTATTTTGCTCTGCAACTACCGTA
TACGTGCTTTGGCTTGGGCCGAACGCCAAATTTCGTGGATCAATTGACTG
TAGGACTGGGCAGCAAGTTGCGCAACTGGACGCAACTTATACCGAACTCT
CAGATAATTGTGGTTCCAAAACCCCTAAACGAACCGTCGCACTGGAAGGC
TCAGCTTTTTGTCACGCCTAGCAAACTGATTCTGATGAGCGTCGTGGCGC
TGGGTGGCACCTGCCTGGTTATCGTCTTTATCATCCTTGTGCTATATATC
AAGGAAAAGCGCGAGGATAAACAGGAACGCTTGCAGGAGTCTCACAGATT
CCATTTCGATGCAATGTAAGGTGGTCGCCCCATTAAATGTAAATTAACTA
ATTAACACTTTTGATTCAACCCATAAGATGAGCTTTTAATTTTATTATTA
TATAATGTTGATTAATATTCCTAAAAGAAAGGAGCGCTCTATTAACTCCA
TTATAAGCTTTCCAACCATATTGATGTCCTAAAATGCCACAAACAAATTG
ATAAAAATGTAAAGTAGAACAATATTTGGCGGACCATCTCAAGGCGGCTT
TTAAAATCATAGCTCATCATGGAATCAATAGAGATGCTCCTTTACATAAT
TTATATTTGTAATATGGTTTAAGAAATGTGATAATATAAAAAAGATAAAA
AATAATAAGATTCAATACGTTGCTCAGGCAAAAAAAAAAAAAAAA

RE36966.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:33:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG7739-RA 2360 CG7739-RA 38..2316 4..2282 11365 99.9 Plus
AGO2-RB 4135 AGO2-RB 3747..4135 2282..1894 1930 99.7 Minus
AGO2-RC 4186 AGO2-RC 3798..4186 2282..1894 1930 99.7 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 13:11:54
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 15550652..15552608 2277..321 9755 99.9 Minus
chr3L 24539361 chr3L 15552666..15552984 322..4 1595 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:52:46 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 13:11:52
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15560723..15562684 2282..321 9780 99.9 Minus
3L 28110227 3L 15562742..15563060 322..4 1595 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:01:38
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 15553823..15555784 2282..321 9780 99.8 Minus
3L 28103327 3L 15555842..15556160 322..4 1595 100 Minus
Blast to na_te.dros performed 2019-03-16 13:11:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dhyd\Bungy 227 Dhyd\Bungy DH14600 227bp Derived from U14600 (Rel. 63, Last updated, Version 2). 81..174 2162..2066 162 67.3 Minus
invader3 5484 invader3 INVADER3 5484bp 5048..5114 2013..1944 117 67.1 Minus

RE36966.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 13:12:59 Download gff for RE36966.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 15550650..15552607 322..2279 97 <- Minus
chr3L 15552667..15552987 1..321 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:12:56 Download gff for RE36966.complete
Subject Subject Range Query Range Percent Splice Strand
CG7739-RA 1..1791 129..1919 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:55:36 Download gff for RE36966.complete
Subject Subject Range Query Range Percent Splice Strand
CG7739-RA 1..1791 129..1919 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 11:54:19 Download gff for RE36966.complete
Subject Subject Range Query Range Percent Splice Strand
CG7739-RA 1..1791 129..1919 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:20:29 Download gff for RE36966.complete
Subject Subject Range Query Range Percent Splice Strand
CG7739-RA 1..1791 129..1919 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:10:49 Download gff for RE36966.complete
Subject Subject Range Query Range Percent Splice Strand
CG7739-RA 1..1791 129..1919 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:19:29 Download gff for RE36966.complete
Subject Subject Range Query Range Percent Splice Strand
CG7739-RA 1..2272 1..2272 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:55:36 Download gff for RE36966.complete
Subject Subject Range Query Range Percent Splice Strand
CG7739-RA 1..2272 1..2272 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:54:19 Download gff for RE36966.complete
Subject Subject Range Query Range Percent Splice Strand
CG7739-RA 3..2281 1..2279 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:20:30 Download gff for RE36966.complete
Subject Subject Range Query Range Percent Splice Strand
CG7739-RA 1..2272 1..2272 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:10:49 Download gff for RE36966.complete
Subject Subject Range Query Range Percent Splice Strand
CG7739-RA 3..2281 1..2279 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:12:59 Download gff for RE36966.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15560726..15562683 322..2279 99 <- Minus
3L 15562743..15563063 1..321 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:12:59 Download gff for RE36966.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15560726..15562683 322..2279 99 <- Minus
3L 15562743..15563063 1..321 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:12:59 Download gff for RE36966.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15560726..15562683 322..2279 99 <- Minus
3L 15562743..15563063 1..321 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:54:19 Download gff for RE36966.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15553826..15555783 322..2279 99 <- Minus
arm_3L 15555843..15556163 1..321 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:55:04 Download gff for RE36966.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15553826..15555783 322..2279 99 <- Minus
3L 15555843..15556163 1..321 99   Minus

RE36966.pep Sequence

Translation from 128 to 1918

> RE36966.pep
MTRCSLVLGLLLALGNLIHASNITDKVFADIKEGIVAAFGDFNSDELTDV
FVIRDGMKRLQILFGHYTEPLLKLGPDCQYGDKTIVSVIPGDFDGDALMD
VLVNLKGKDEETYEVHINWGNTTELKCSNKSLFTSKGEVMALDFNRDMII
DLYGLDSAERRTFWIFNSSRLPPEAVHQAEPTEFKENLSIPNANAYLDLN
GDFLADLFLQTKSSYEIWHGINERDKQENFSYQYQIKFQPIGGNDYYIGQ
AVFMDFELKGVQNIVVPFCILSNCRNSSIMVHDGTDFRNLHVNFRDPQGV
TWAFVPPVSDDVYLRTITARSGDFNLDGYPDLLVTLQPLNVDKPVMQTFL
LENVPCTTCNKPLKRTFEVRWNALSPMGNNTVAGAFYDFYQDGVLDVILI
RKDGKGKYQPLAFRNTLDYDANFVKVIVLTGLDNKQNPERRTPLGRKKRT
YGTNLPGPRITYSTTTQDGDQQCGSSVQLPQASYFALQLPYTCFGLGRTP
NFVDQLTVGLGSKLRNWTQLIPNSQIIVVPKPLNEPSHWKAQLFVTPSKL
ILMSVVALGGTCLVIVFIILVLYIKEKREDKQERLQESHRFHFDAM*

RE36966.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 02:41:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24463-PA 603 GF24463-PA 21..603 17..596 2598 83 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 02:41:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13538-PA 597 GG13538-PA 1..597 1..596 2955 94.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 02:41:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16812-PA 594 GH16812-PA 17..594 19..596 2315 76.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:16:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG7739-PA 596 CG7739-PA 1..596 1..596 3153 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 02:41:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12215-PA 594 GI12215-PA 3..594 5..596 2344 75.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 02:41:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25540-PA 598 GL25540-PA 18..598 17..596 2606 85.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 02:41:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20555-PA 598 GA20555-PA 18..598 17..596 2601 85.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 02:41:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24481-PA 597 GM24481-PA 1..597 1..596 3100 96.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 02:41:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12554-PA 598 GD12554-PA 1..598 1..596 3066 96.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 02:42:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11447-PA 594 GJ11447-PA 16..594 18..596 2365 77.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 02:42:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10513-PA 603 GK10513-PA 11..603 8..596 2459 79.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 02:42:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19839-PA 597 GE19839-PA 1..597 1..596 2972 94.6 Plus
Dyak\GE22837-PA 194 GE22837-PA 3..194 405..596 1020 99 Plus

RE36966.hyp Sequence

Translation from 128 to 1918

> RE36966.hyp
MTRCSLVLGLLLALGNLIHASNITDKVFADIKEGIVAAFGDFNSDELTDV
FVIRDGMKRLQILFGHYTEPLLKLGPDCQYGDKTIVSVIPGDFDGDALMD
VLVNLKGKDEETYEVHINWGNTTELKCSNKSLFTSKGEVMALDFNRDMII
DLYGLDSAERRTFWIFNSSRLPPEAVHQAEPTEFKENLSIPNANAYLDLN
GDFLADLFLQTKSSYEIWHGINERDKQENFSYQYQIKFQPIGGNDYYIGQ
AVFMDFELKGVQNIVVPFCILSNCRNSSIMVHDGTDFRNLHVNFRDPQGV
TWAFVPPVSDDVYLRTITARSGDFNLDGYPDLLVTLQPLNVDKPVMQTFL
LENVPCTTCNKPLKRTFEVRWNALSPMGNNTVAGAFYDFYQDGVLDVILI
RKDGKGKYQPLAFRNTLDYDANFVKVIVLTGLDNKQNPERRTPLGRKKRT
YGTNLPGPRITYSTTTQDGDQQCGSSVQLPQASYFALQLPYTCFGLGRTP
NFVDQLTVGLGSKLRNWTQLIPNSQIIVVPKPLNEPSHWKAQLFVTPSKL
ILMSVVALGGTCLVIVFIILVLYIKEKREDKQERLQESHRFHFDAM*

RE36966.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:26:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG7739-PA 596 CG7739-PA 1..596 1..596 3153 100 Plus