BDGP Sequence Production Resources |
Search the DGRC for RE37018
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 370 |
Well: | 18 |
Vector: | pFlc-1 |
Associated Gene/Transcript | nuf-RD |
Protein status: | RE37018.pep: gold |
Sequenced Size: | 2479 |
Gene | Date | Evidence |
---|---|---|
nuf-RD | 2009-06-22 | Replacement based on scoring |
2479 bp assembled on 2009-11-10
GenBank Submission: BT100278.1
> RE37018.complete AGTCCTTGCCGCGCAGCCTTTGACGTCGATTGTGTGTCCGTGTATCCATC CATCGCTTTTCAGTGCTCTCATCTCGATTGAATATAAAGTGCCACACTCT CTAGAGTTGTCGTTGTCGCTTCGAGAAAATATAAACGAACAGTCTGCTTC GGCCGTCAAATGAGCAAAGACTACGCGGCGATGCAGAAATAATTTGAATT TTCTTAAGCCTGCGAGAAAACAGCATTCCTGAATAATGTGAAAAGATATA TCAGCAAATATATAATCATTTGCACACCATATATATATATATATAGGCAA ATGTATGTGAAATATCCCATGGCTGAGGTGCAGTTGGTGAACGATCTTCT CCTCGATCTGCGGCACATGAAAAAAGATTGTCTGGAACTGCTGCAGCGCA AGGTGGACGATCTGTCAGATACACAGAATATAGCTGAGGATCGGACAACC CGCACCAAGACCGAATATGCAGTCCTTCAGGCGCGTTATCACATGCTCGA AGAGCAGTACCGAGAGTCGGAACTGCGTGCCGAGGAGCGTTTGGCAGAGG AGCAGAAGCGGCACCGCGAGATTTTGGCCCGCGTGGAGCGTGAAGCCTCG CTGCAGAACGAGAACTGCCAGATGAAGATCCGTGCCACCGAGATCGAGGC AACGGCACTGCGGGAAGAAGCCGCCCGACTGCGTGTCCTGTGTGACAAGC AGGCCAATGACCTCCATCGCACCGAGGAACAGTTGGAGCTGGCGCGCGAC CAAATCGGCGTCCTGCAACAGGAGCACGAGGAGCAGGCACAGGCACTGCG CCGCCACGAACAGGAGAAGAAGTCCACCGAGGAGCTGATGCTGGAGCTGG GCCGGGAACTGCAGCGTGCTCGCGAGGAGAGTGGAGCCCGGGCAATGCCG ACCACATCGCCGGAGAGCATAAGACTGGAGGAGCTGCATCAGGAGCTCGA GGAGATGCGCCAGAAGAACCGAACCCTCGAAGAACAGAACGAGGAGCTGC AGGCCACGATGCTGACCAACCAGGCCACCATGCTGACAAATGGCGTGGAG CAGGGTCGCCATCTGCTGAACGGAACACTCAACAGTTTGGCTCAGGAGCT CGAGGAGATGTCACAAGCCCAGCTACAACAGGCCTTCCAGGAAAAGGAGG ATGAAAATGTTCGGCTTAAGCACTATATTGATACCATTCTACTCAACATC GTGGAGAACTATCCTCAATTGCTGGAAGTCAAGCCCATGGAGCGAAAGTA GTGCAGTCTACTGGAAGAATAAACCAACCCTAGGCACTCGGCAGAGTGTC ACAACCACCTAACATTACCTAAAATTAATAAACTAACTAAACCATACTCT ATGTTAACTTTTTAAGCTACACTCTATACATGTATTTATGCCTAACTTAA GTCATAATTTATTTTATAACAATTTAATGTAGATTTTTAAACCAAAACAA CGCAGAGAACACAAAGATTGCATGTCAAAATGATAAAAAAGTCCTTAATT TGATTAGATTATGTTTTGTATAAAGAGAGTCCAAAGTTATGTAAAAGTTT ATTTTCCTTCGTTTCTAGTTTGCGTTTTGTATAGTTCGTGTTGTTGATCC ATAAAGATATTACTTATAAATATTGTTAGATTTTAAGTCGTAAAAAATCT TTCACTTATTAATGAAATGGAACCCAATAATTTATTGATAATTGCCAGAA AATCTAATTGTGAATGTGTATAGCATAAAGAGATTTTATGAACTGTTGAT GCTTGACAGGAAATATTTCCAATTTCGTCATGGCAGCTAAGAAGGTTTTT GCTAGGACAAGTGCTCCATTTTTCAAATCTTTCCATCACATGCATACTTC TTAAATCTTTCTATCCATATTTTGCACTCTCCGAAAAGATCTTCCCTAGT TTGCCTGTAATGTAGTTACAAAAATCTATCAAAAAATTTGCGTTTATGGT ATGGACAATCCCAGGATACAAAGACGGAGTTTTAGTTTGATGTGAGTCTA AATGAGAGCAATTATCACGAGGAGTTTATCAATTCAGAAGTTATATCTTA ATCCACACACATATGTCAATGTATAGCACAGATAAAACTAATCTTACTCT GCATATAAAACAACATTAAATGGACATAATGTGCAAACGTTTAGGGATGA CACATGATAGCTCCAACGAAAGCGATCCCTAATAGTCTTAGCAACTGAAT AACTCAAGCGGTCAACCCTAATTTAGCTATAATAATATCCAAGAAAACTC GATAATCGATGTGTAATCGTTAATCAAAATTTTATTGCCTTAAACGGATG TTTTAAAAAATGTACTAAGGCTTAGATAACTCTAACAAAAAAGTCCATAA GGTTTAATGACATGCTGCGAAATATGGAATTTTAAATGTAATTTACTAGA TGCAAGTCGCTGAACTTATATCAAAATAAAAAGAAGAATATTTTATAAAA AAAAAAAAAAAAAGAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
nuf-RD | 2506 | nuf-RD | 1..2449 | 1..2449 | 12215 | 99.9 | Plus |
nuf.e | 2557 | nuf.e | 1160..2489 | 1120..2449 | 6635 | 99.9 | Plus |
nuf.c | 2530 | nuf.c | 1196..2525 | 1120..2449 | 6635 | 99.9 | Plus |
nuf.e | 2557 | nuf.e | 2..1123 | 1..1122 | 5595 | 99.9 | Plus |
nuf.c | 2530 | nuf.c | 419..1159 | 382..1122 | 3705 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 14222026..14223353 | 1120..2449 | 6510 | 99.5 | Plus |
chr3L | 24539361 | chr3L | 14220757..14221215 | 515..973 | 2280 | 99.8 | Plus |
chr3L | 24539361 | chr3L | 14219927..14220205 | 103..381 | 1395 | 100 | Plus |
chr3L | 24539361 | chr3L | 14221280..14221428 | 974..1122 | 685 | 97.3 | Plus |
chr3L | 24539361 | chr3L | 14220275..14220409 | 382..516 | 675 | 100 | Plus |
chr3L | 24539361 | chr3L | 14218951..14219052 | 1..102 | 495 | 99 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 14231924..14233253 | 1120..2449 | 6635 | 99.9 | Plus |
3L | 28110227 | 3L | 14230654..14231112 | 515..973 | 2295 | 100 | Plus |
3L | 28110227 | 3L | 14229828..14230106 | 103..381 | 1395 | 100 | Plus |
3L | 28110227 | 3L | 14231177..14231325 | 974..1122 | 745 | 100 | Plus |
3L | 28110227 | 3L | 14230176..14230310 | 382..516 | 675 | 100 | Plus |
3L | 28110227 | 3L | 14228852..14228953 | 1..102 | 495 | 99 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 14225024..14226353 | 1120..2449 | 6635 | 99.9 | Plus |
3L | 28103327 | 3L | 14223754..14224212 | 515..973 | 2295 | 100 | Plus |
3L | 28103327 | 3L | 14222928..14223206 | 103..381 | 1395 | 100 | Plus |
3L | 28103327 | 3L | 14224277..14224425 | 974..1122 | 745 | 100 | Plus |
3L | 28103327 | 3L | 14223276..14223410 | 382..516 | 675 | 100 | Plus |
3L | 28103327 | 3L | 14221952..14222053 | 1..102 | 495 | 99 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
S-element | 1736 | S-element DM33463 1736bp Derived from U33463 (g1006788) (Rel. 47, Last updated, Version 5). | 1456..1703 | 1473..1711 | 217 | 59.4 | Plus |
S-element | 1736 | S-element DM33463 1736bp Derived from U33463 (g1006788) (Rel. 47, Last updated, Version 5). | 34..209 | 1711..1532 | 160 | 59 | Minus |
McClintock | 6450 | McClintock McCLINTOCK 6450bp | 906..1279 | 2100..2463 | 121 | 52.5 | Plus |
McClintock | 6450 | McClintock McCLINTOCK 6450bp | 2703..2760 | 1300..1357 | 119 | 67.2 | Plus |
Dvir\Uvir | 6564 | Dvir\Uvir VIRUVIR 6564bp | 131..238 | 1594..1702 | 119 | 59.1 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 14218951..14219052 | 1..102 | 99 | -> | Plus |
chr3L | 14219927..14220205 | 103..381 | 100 | -> | Plus |
chr3L | 14220275..14220409 | 382..516 | 100 | -> | Plus |
chr3L | 14220759..14221215 | 517..973 | 99 | -> | Plus |
chr3L | 14221280..14221428 | 974..1122 | 97 | -> | Plus |
chr3L | 14222029..14223350 | 1123..2446 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
nuf-RD | 1..951 | 301..1251 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
nuf-RD | 1..951 | 301..1251 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
nuf-RD | 1..951 | 301..1251 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
nuf-RD | 1..951 | 301..1251 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
nuf-RD | 1..2446 | 1..2446 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
nuf-RD | 1..2446 | 1..2446 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
nuf-RD | 3..2448 | 1..2446 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
nuf-RD | 3..2448 | 1..2446 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 14230176..14230310 | 382..516 | 100 | -> | Plus |
3L | 14228852..14228953 | 1..102 | 99 | -> | Plus |
3L | 14229828..14230106 | 103..381 | 100 | -> | Plus |
3L | 14230656..14231112 | 517..973 | 100 | -> | Plus |
3L | 14231177..14231325 | 974..1122 | 100 | -> | Plus |
3L | 14231927..14233250 | 1123..2446 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 14230176..14230310 | 382..516 | 100 | -> | Plus |
3L | 14228852..14228953 | 1..102 | 99 | -> | Plus |
3L | 14229828..14230106 | 103..381 | 100 | -> | Plus |
3L | 14230656..14231112 | 517..973 | 100 | -> | Plus |
3L | 14231177..14231325 | 974..1122 | 100 | -> | Plus |
3L | 14231927..14233250 | 1123..2446 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 14230176..14230310 | 382..516 | 100 | -> | Plus |
3L | 14228852..14228953 | 1..102 | 99 | -> | Plus |
3L | 14229828..14230106 | 103..381 | 100 | -> | Plus |
3L | 14230656..14231112 | 517..973 | 100 | -> | Plus |
3L | 14231177..14231325 | 974..1122 | 100 | -> | Plus |
3L | 14231927..14233250 | 1123..2446 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 14221952..14222053 | 1..102 | 99 | -> | Plus |
arm_3L | 14222928..14223206 | 103..381 | 100 | -> | Plus |
arm_3L | 14223276..14223410 | 382..516 | 100 | -> | Plus |
arm_3L | 14223756..14224212 | 517..973 | 100 | -> | Plus |
arm_3L | 14224277..14224425 | 974..1122 | 100 | -> | Plus |
arm_3L | 14225027..14226350 | 1123..2446 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 14222928..14223206 | 103..381 | 100 | -> | Plus |
3L | 14223276..14223410 | 382..516 | 100 | -> | Plus |
3L | 14223756..14224212 | 517..973 | 100 | -> | Plus |
3L | 14224277..14224425 | 974..1122 | 100 | -> | Plus |
3L | 14225027..14226350 | 1123..2446 | 99 | Plus | |
3L | 14221952..14222053 | 1..102 | 99 | -> | Plus |
Translation from 300 to 1250
> RE37018.pep MYVKYPMAEVQLVNDLLLDLRHMKKDCLELLQRKVDDLSDTQNIAEDRTT RTKTEYAVLQARYHMLEEQYRESELRAEERLAEEQKRHREILARVEREAS LQNENCQMKIRATEIEATALREEAARLRVLCDKQANDLHRTEEQLELARD QIGVLQQEHEEQAQALRRHEQEKKSTEELMLELGRELQRAREESGARAMP TTSPESIRLEELHQELEEMRQKNRTLEEQNEELQATMLTNQATMLTNGVE QGRHLLNGTLNSLAQELEEMSQAQLQQAFQEKEDENVRLKHYIDTILLNI VENYPQLLEVKPMERK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF24596-PA | 525 | GF24596-PA | 210..525 | 1..316 | 1557 | 96.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG15679-PA | 526 | GG15679-PA | 238..526 | 28..316 | 1465 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH17096-PA | 544 | GH17096-PA | 229..544 | 1..316 | 1360 | 91.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
nuf-PD | 316 | CG33991-PD | 1..316 | 1..316 | 1576 | 100 | Plus |
nuf-PB | 305 | CG33991-PB | 1..305 | 12..316 | 1445 | 96.1 | Plus |
nuf-PA | 502 | CG33991-PA | 198..502 | 12..316 | 1445 | 96.1 | Plus |
nuf-PC | 502 | CG33991-PC | 198..502 | 12..316 | 1445 | 96.1 | Plus |
nuf-PF | 528 | CG33991-PF | 240..528 | 28..316 | 1433 | 100 | Plus |
nuf-PE | 528 | CG33991-PE | 240..528 | 28..316 | 1433 | 100 | Plus |
nuf-PL | 515 | CG33991-PL | 198..515 | 12..316 | 1421 | 92.1 | Plus |
nuf-PH | 529 | CG33991-PH | 212..529 | 12..316 | 1421 | 92.1 | Plus |
nuf-PG | 530 | CG33991-PG | 213..530 | 12..316 | 1421 | 92.1 | Plus |
nuf-PM | 318 | CG33991-PM | 1..318 | 12..316 | 1421 | 92.1 | Plus |
nuf-PK | 541 | CG33991-PK | 240..541 | 28..316 | 1409 | 95.7 | Plus |
nuf-PJ | 541 | CG33991-PJ | 240..541 | 28..316 | 1409 | 95.7 | Plus |
lva-PD | 2779 | CG6450-PD | 1336..1535 | 29..251 | 160 | 22.4 | Plus |
lva-PC | 2779 | CG6450-PC | 1336..1535 | 29..251 | 160 | 22.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI11698-PA | 533 | GI11698-PA | 218..533 | 1..316 | 1337 | 90.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL21004-PA | 756 | GL21004-PA | 452..756 | 12..316 | 1262 | 88.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA23801-PA | 639 | GA23801-PA | 324..639 | 1..316 | 1381 | 91.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM25461-PA | 526 | GM25461-PA | 238..526 | 28..316 | 1446 | 99.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD14486-PA | 98 | GD14486-PA | 1..98 | 219..316 | 486 | 98 | Plus |
Dsim\GD14485-PA | 66 | GD14485-PA | 1..66 | 12..83 | 238 | 73.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ11373-PA | 531 | GJ11373-PA | 216..531 | 1..316 | 1435 | 93 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK12678-PA | 781 | GK12678-PA | 466..781 | 1..316 | 1432 | 92.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE22009-PA | 527 | GE22009-PA | 239..527 | 28..316 | 1464 | 100 | Plus |
Translation from 300 to 1250
> RE37018.hyp MYVKYPMAEVQLVNDLLLDLRHMKKDCLELLQRKVDDLSDTQNIAEDRTT RTKTEYAVLQARYHMLEEQYRESELRAEERLAEEQKRHREILARVEREAS LQNENCQMKIRATEIEATALREEAARLRVLCDKQANDLHRTEEQLELARD QIGVLQQEHEEQAQALRRHEQEKKSTEELMLELGRELQRAREESGARAMP TTSPESIRLEELHQELEEMRQKNRTLEEQNEELQATMLTNQATMLTNGVE QGRHLLNGTLNSLAQELEEMSQAQLQQAFQEKEDENVRLKHYIDTILLNI VENYPQLLEVKPMERK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
nuf-PD | 316 | CG33991-PD | 1..316 | 1..316 | 1576 | 100 | Plus |
nuf-PB | 305 | CG33991-PB | 1..305 | 12..316 | 1445 | 96.1 | Plus |
nuf-PA | 502 | CG33991-PA | 198..502 | 12..316 | 1445 | 96.1 | Plus |
nuf-PC | 502 | CG33991-PC | 198..502 | 12..316 | 1445 | 96.1 | Plus |
nuf-PM | 318 | CG33991-PM | 1..318 | 12..316 | 1421 | 92.1 | Plus |