BDGP Sequence Production Resources |
Search the DGRC for RE37079
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 370 |
Well: | 79 |
Vector: | pFlc-1 |
Associated Gene/Transcript | tsl-RA |
Protein status: | RE37079.pep: gold |
Sequenced Size: | 1387 |
Gene | Date | Evidence |
---|---|---|
CG6705 | 2001-12-14 | Blastp of sequenced clone |
CG6705 | 2002-01-01 | Sim4 clustering to Release 2 |
CG6705 | 2003-01-01 | Sim4 clustering to Release 3 |
tsl | 2008-04-29 | Release 5.5 accounting |
tsl | 2008-08-15 | Release 5.9 accounting |
tsl | 2008-12-18 | 5.12 accounting |
1387 bp (1387 high quality bases) assembled on 2001-12-14
GenBank Submission: AY071336
> RE37079.complete AGTAGGTTTTGAGTCTTCGCGCTTGAAGGTGTGCTGCTCGCGTTTTGAGT ATCTAACCTTGAATGCTGAGCGATGCGGTCGTGGCCTGGCCTTTTCTGGC TGCTGACCCTGGCGCTCCTGGCGGATGGAGGTCGTCGCGAGTCCCAGCTC CGGATCGGCAAGGCCATCAATATATTCCTGCGCTATGGCTACCTGGGAAT CTCCATGCGTGTGATACCGCTCAATGACAACTCGGAGCCGGATCGCTGGG TGTTTAAGGAGCCCACCAAAAACATCTATAGGAATCTGAGTGGCCTGGCG GAGAGTCATGAAGACACCACGCCCGGAATCTTTCATGGAGACTTTCACAT GGAGTTCTGCGAGAATCGGAGGCAACTGTTCCAGGCCTACTTCCGTGACT TTTCCATTGAGCGAATGGACAAACCGTGGGAGGCATTTACTGGCGGATGG TTTCCGGATAATGCGGCCAAGAAGCTGGGCATCAATACATCTTTCATCCA AGGCGATTACTCGTATGTTTTGGTGAGGGTGGTGCGCTTCAGGGAAACGG GGCGTCTTAACGCTGAGATTCCGGTGCACCAACCCTTGGAGCCGGATGTG CGATCGAGAATGGATCAACTGCAAATCGGAAATATAACTTCCGCAGTGCG ATTTATGGAAGATGTGGGCACCCACTACGTAAACTCATACACCACCGGCA ATTCGCTGTATCAGGTGTTTGTGTACAGCAGGAAGAACTACAGCATGATC AAGGAGCGAATCAAGAGTAAAGGTCTGAACGGACTGTCCAAGTTGGATCT TTACAACTACTTTGCGCCCTGGTTTGCCGCCCATCTGGGCCAGATTCGAT CGGCTAGTGCCAATGCTACAGTGGAAAGATGGGCGAGAAGGAAGCTGCAG TACGAGTACTATGTGGTCAAGTATGTGACCCTGCTGAAACTGCACGGTAA TAGTACTCTACTGCGATCCCTGGACTCGCTGCTCGGCAACGATGCCATAC TGCAGTTGGACCTCAAGTCGCTGAAGCCCATCTTCCGGGAGGAGCCGGAA AAGGAGAGCTGGTACCACGAGGTTCTCGACAACAATGTGAAGCTCTGGGA GCTTAACATGCCGCAGAGTCATCCCACCCGATAGCTGCATTTTAAATATA TATATACTGTGCGATATGTGGCAGCCAAGGATCAATAGTTCCTAGATGCT TAGTTGTAGTTAGGAACCTCTAGTGCGTAGTTAATGTTCTGCCTGTGATA GTTTTAGGTAGTTTAATTGGAACACAGTACACATCCGACTTGCATTTCAG CTAACTAGACCGTAAGATCGCCTTATTGATGTAATAGTTTTGTAAACTTT AATACAAAGTAAAGATAAAAGCAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
tsl-RB | 1475 | tsl-RB | 40..1414 | 3..1377 | 6860 | 99.9 | Plus |
tsl-RA | 1945 | tsl-RA | 558..1884 | 51..1377 | 6620 | 99.9 | Plus |
tsl.a | 1425 | tsl.a | 104..1424 | 51..1371 | 6605 | 100 | Plus |
tsl-RA | 1945 | tsl-RA | 14..61 | 3..50 | 240 | 100 | Plus |
tsl.a | 1425 | tsl.a | 14..61 | 3..50 | 240 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 17601869..17602958 | 1371..282 | 5450 | 100 | Minus |
chr3R | 27901430 | chr3R | 17603306..17603537 | 282..51 | 1160 | 100 | Minus |
chr3R | 27901430 | chr3R | 17606233..17606280 | 50..3 | 240 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 21778109..21779204 | 1377..282 | 5465 | 99.9 | Minus |
3R | 32079331 | 3R | 21779552..21779783 | 282..51 | 1160 | 100 | Minus |
3R | 32079331 | 3R | 21782484..21782531 | 50..3 | 240 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 21518940..21520035 | 1377..282 | 5465 | 99.9 | Minus |
3R | 31820162 | 3R | 21520383..21520614 | 282..51 | 1160 | 100 | Minus |
3R | 31820162 | 3R | 21523315..21523362 | 50..3 | 240 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\Ulysses | 10653 | Dvir\Ulysses DVULYSS 10653bp AKA(S37633) Derived from X56645 (Rel. 38, Last updated, Version 6). | 7136..7233 | 1008..1102 | 112 | 62.6 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 17601868..17602957 | 283..1372 | 99 | <- | Minus |
chr3R | 17603306..17603537 | 51..282 | 100 | <- | Minus |
chr3R | 17606233..17606283 | 1..50 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
tsl-RA | 1..1062 | 73..1134 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
tsl-RA | 1..1062 | 73..1134 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
tsl-RB | 1..1062 | 73..1134 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
tsl-RA | 1..1062 | 73..1134 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
tsl-RB | 1..1062 | 73..1134 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
tsl-RB | 1..1372 | 1..1372 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
tsl-RB | 1..1372 | 1..1372 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
tsl-RB | 3..1374 | 1..1372 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
tsl-RB | 1..1372 | 1..1372 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
tsl-RB | 3..1374 | 1..1372 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 21778114..21779203 | 283..1372 | 99 | <- | Minus |
3R | 21779552..21779783 | 51..282 | 100 | <- | Minus |
3R | 21782484..21782534 | 1..50 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 21778114..21779203 | 283..1372 | 99 | <- | Minus |
3R | 21779552..21779783 | 51..282 | 100 | <- | Minus |
3R | 21782484..21782534 | 1..50 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 21778114..21779203 | 283..1372 | 99 | <- | Minus |
3R | 21779552..21779783 | 51..282 | 100 | <- | Minus |
3R | 21782484..21782534 | 1..50 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 17603836..17604925 | 283..1372 | 99 | <- | Minus |
arm_3R | 17605274..17605505 | 51..282 | 100 | <- | Minus |
arm_3R | 17608206..17608256 | 1..50 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 21518945..21520034 | 283..1372 | 99 | <- | Minus |
3R | 21520383..21520614 | 51..282 | 100 | <- | Minus |
3R | 21523315..21523365 | 1..50 | 98 | Minus |
Translation from 72 to 1133
> RE37079.hyp MRSWPGLFWLLTLALLADGGRRESQLRIGKAINIFLRYGYLGISMRVIPL NDNSEPDRWVFKEPTKNIYRNLSGLAESHEDTTPGIFHGDFHMEFCENRR QLFQAYFRDFSIERMDKPWEAFTGGWFPDNAAKKLGINTSFIQGDYSYVL VRVVRFRETGRLNAEIPVHQPLEPDVRSRMDQLQIGNITSAVRFMEDVGT HYVNSYTTGNSLYQVFVYSRKNYSMIKERIKSKGLNGLSKLDLYNYFAPW FAAHLGQIRSASANATVERWARRKLQYEYYVVKYVTLLKLHGNSTLLRSL DSLLGNDAILQLDLKSLKPIFREEPEKESWYHEVLDNNVKLWELNMPQSH PTR*
Translation from 72 to 1133
> RE37079.pep MRSWPGLFWLLTLALLADGGRRESQLRIGKAINIFLRYGYLGISMRVIPL NDNSEPDRWVFKEPTKNIYRNLSGLAESHEDTTPGIFHGDFHMEFCENRR QLFQAYFRDFSIERMDKPWEAFTGGWFPDNAAKKLGINTSFIQGDYSYVL VRVVRFRETGRLNAEIPVHQPLEPDVRSRMDQLQIGNITSAVRFMEDVGT HYVNSYTTGNSLYQVFVYSRKNYSMIKERIKSKGLNGLSKLDLYNYFAPW FAAHLGQIRSASANATVERWARRKLQYEYYVVKYVTLLKLHGNSTLLRSL DSLLGNDAILQLDLKSLKPIFREEPEKESWYHEVLDNNVKLWELNMPQSH PTR*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF16968-PA | 361 | GF16968-PA | 12..361 | 6..353 | 1631 | 84.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG22581-PA | 353 | GG22581-PA | 1..353 | 1..353 | 1852 | 97.7 | Plus |
Dere\GG11043-PA | 129 | GG11043-PA | 1..129 | 225..353 | 654 | 96.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH18715-PA | 362 | GH18715-PA | 27..362 | 17..353 | 1563 | 83.4 | Plus |
Dgri\GH25309-PA | 344 | GH25309-PA | 27..344 | 17..353 | 1434 | 77.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
tsl-PC | 353 | CG6705-PC | 1..353 | 1..353 | 1874 | 100 | Plus |
tsl-PA | 353 | CG6705-PA | 1..353 | 1..353 | 1874 | 100 | Plus |
tsl-PB | 353 | CG6705-PB | 1..353 | 1..353 | 1874 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI22863-PA | 361 | GI22863-PA | 25..361 | 17..353 | 1542 | 84.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL23742-PA | 357 | GL23742-PA | 24..357 | 20..353 | 1622 | 88 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA19798-PA | 357 | GA19798-PA | 24..357 | 20..353 | 1618 | 87.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM23694-PA | 353 | GM23694-PA | 1..353 | 1..353 | 1874 | 98.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD18504-PA | 353 | GD18504-PA | 1..353 | 1..353 | 1879 | 99.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ14161-PA | 367 | GJ14161-PA | 34..367 | 20..353 | 1613 | 87.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK13020-PA | 355 | GK13020-PA | 8..355 | 6..353 | 1637 | 85.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE24088-PA | 353 | GE24088-PA | 1..353 | 1..353 | 1864 | 98.3 | Plus |