Clone RE37079 Report

Search the DGRC for RE37079

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:370
Well:79
Vector:pFlc-1
Associated Gene/Transcripttsl-RA
Protein status:RE37079.pep: gold
Sequenced Size:1387

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6705 2001-12-14 Blastp of sequenced clone
CG6705 2002-01-01 Sim4 clustering to Release 2
CG6705 2003-01-01 Sim4 clustering to Release 3
tsl 2008-04-29 Release 5.5 accounting
tsl 2008-08-15 Release 5.9 accounting
tsl 2008-12-18 5.12 accounting

Clone Sequence Records

RE37079.complete Sequence

1387 bp (1387 high quality bases) assembled on 2001-12-14

GenBank Submission: AY071336

> RE37079.complete
AGTAGGTTTTGAGTCTTCGCGCTTGAAGGTGTGCTGCTCGCGTTTTGAGT
ATCTAACCTTGAATGCTGAGCGATGCGGTCGTGGCCTGGCCTTTTCTGGC
TGCTGACCCTGGCGCTCCTGGCGGATGGAGGTCGTCGCGAGTCCCAGCTC
CGGATCGGCAAGGCCATCAATATATTCCTGCGCTATGGCTACCTGGGAAT
CTCCATGCGTGTGATACCGCTCAATGACAACTCGGAGCCGGATCGCTGGG
TGTTTAAGGAGCCCACCAAAAACATCTATAGGAATCTGAGTGGCCTGGCG
GAGAGTCATGAAGACACCACGCCCGGAATCTTTCATGGAGACTTTCACAT
GGAGTTCTGCGAGAATCGGAGGCAACTGTTCCAGGCCTACTTCCGTGACT
TTTCCATTGAGCGAATGGACAAACCGTGGGAGGCATTTACTGGCGGATGG
TTTCCGGATAATGCGGCCAAGAAGCTGGGCATCAATACATCTTTCATCCA
AGGCGATTACTCGTATGTTTTGGTGAGGGTGGTGCGCTTCAGGGAAACGG
GGCGTCTTAACGCTGAGATTCCGGTGCACCAACCCTTGGAGCCGGATGTG
CGATCGAGAATGGATCAACTGCAAATCGGAAATATAACTTCCGCAGTGCG
ATTTATGGAAGATGTGGGCACCCACTACGTAAACTCATACACCACCGGCA
ATTCGCTGTATCAGGTGTTTGTGTACAGCAGGAAGAACTACAGCATGATC
AAGGAGCGAATCAAGAGTAAAGGTCTGAACGGACTGTCCAAGTTGGATCT
TTACAACTACTTTGCGCCCTGGTTTGCCGCCCATCTGGGCCAGATTCGAT
CGGCTAGTGCCAATGCTACAGTGGAAAGATGGGCGAGAAGGAAGCTGCAG
TACGAGTACTATGTGGTCAAGTATGTGACCCTGCTGAAACTGCACGGTAA
TAGTACTCTACTGCGATCCCTGGACTCGCTGCTCGGCAACGATGCCATAC
TGCAGTTGGACCTCAAGTCGCTGAAGCCCATCTTCCGGGAGGAGCCGGAA
AAGGAGAGCTGGTACCACGAGGTTCTCGACAACAATGTGAAGCTCTGGGA
GCTTAACATGCCGCAGAGTCATCCCACCCGATAGCTGCATTTTAAATATA
TATATACTGTGCGATATGTGGCAGCCAAGGATCAATAGTTCCTAGATGCT
TAGTTGTAGTTAGGAACCTCTAGTGCGTAGTTAATGTTCTGCCTGTGATA
GTTTTAGGTAGTTTAATTGGAACACAGTACACATCCGACTTGCATTTCAG
CTAACTAGACCGTAAGATCGCCTTATTGATGTAATAGTTTTGTAAACTTT
AATACAAAGTAAAGATAAAAGCAAAAAAAAAAAAAAA

RE37079.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:43:26
Subject Length Description Subject Range Query Range Score Percent Strand
tsl-RB 1475 tsl-RB 40..1414 3..1377 6860 99.9 Plus
tsl-RA 1945 tsl-RA 558..1884 51..1377 6620 99.9 Plus
tsl.a 1425 tsl.a 104..1424 51..1371 6605 100 Plus
tsl-RA 1945 tsl-RA 14..61 3..50 240 100 Plus
tsl.a 1425 tsl.a 14..61 3..50 240 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:43:50
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 17601869..17602958 1371..282 5450 100 Minus
chr3R 27901430 chr3R 17603306..17603537 282..51 1160 100 Minus
chr3R 27901430 chr3R 17606233..17606280 50..3 240 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:52:54 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:43:48
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21778109..21779204 1377..282 5465 99.9 Minus
3R 32079331 3R 21779552..21779783 282..51 1160 100 Minus
3R 32079331 3R 21782484..21782531 50..3 240 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:10:16
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 21518940..21520035 1377..282 5465 99.9 Minus
3R 31820162 3R 21520383..21520614 282..51 1160 100 Minus
3R 31820162 3R 21523315..21523362 50..3 240 100 Minus
Blast to na_te.dros performed 2019-03-15 22:43:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Ulysses 10653 Dvir\Ulysses DVULYSS 10653bp AKA(S37633) Derived from X56645 (Rel. 38, Last updated, Version 6). 7136..7233 1008..1102 112 62.6 Plus

RE37079.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:44:53 Download gff for RE37079.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 17601868..17602957 283..1372 99 <- Minus
chr3R 17603306..17603537 51..282 100 <- Minus
chr3R 17606233..17606283 1..50 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:13:03 Download gff for RE37079.complete
Subject Subject Range Query Range Percent Splice Strand
tsl-RA 1..1062 73..1134 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:09:35 Download gff for RE37079.complete
Subject Subject Range Query Range Percent Splice Strand
tsl-RA 1..1062 73..1134 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:31:05 Download gff for RE37079.complete
Subject Subject Range Query Range Percent Splice Strand
tsl-RB 1..1062 73..1134 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:33:49 Download gff for RE37079.complete
Subject Subject Range Query Range Percent Splice Strand
tsl-RA 1..1062 73..1134 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:33:34 Download gff for RE37079.complete
Subject Subject Range Query Range Percent Splice Strand
tsl-RB 1..1062 73..1134 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:39:13 Download gff for RE37079.complete
Subject Subject Range Query Range Percent Splice Strand
tsl-RB 1..1372 1..1372 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:09:35 Download gff for RE37079.complete
Subject Subject Range Query Range Percent Splice Strand
tsl-RB 1..1372 1..1372 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:31:05 Download gff for RE37079.complete
Subject Subject Range Query Range Percent Splice Strand
tsl-RB 3..1374 1..1372 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:33:49 Download gff for RE37079.complete
Subject Subject Range Query Range Percent Splice Strand
tsl-RB 1..1372 1..1372 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:33:34 Download gff for RE37079.complete
Subject Subject Range Query Range Percent Splice Strand
tsl-RB 3..1374 1..1372 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:44:53 Download gff for RE37079.complete
Subject Subject Range Query Range Percent Splice Strand
3R 21778114..21779203 283..1372 99 <- Minus
3R 21779552..21779783 51..282 100 <- Minus
3R 21782484..21782534 1..50 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:44:53 Download gff for RE37079.complete
Subject Subject Range Query Range Percent Splice Strand
3R 21778114..21779203 283..1372 99 <- Minus
3R 21779552..21779783 51..282 100 <- Minus
3R 21782484..21782534 1..50 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:44:53 Download gff for RE37079.complete
Subject Subject Range Query Range Percent Splice Strand
3R 21778114..21779203 283..1372 99 <- Minus
3R 21779552..21779783 51..282 100 <- Minus
3R 21782484..21782534 1..50 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:31:05 Download gff for RE37079.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17603836..17604925 283..1372 99 <- Minus
arm_3R 17605274..17605505 51..282 100 <- Minus
arm_3R 17608206..17608256 1..50 98   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:10:56 Download gff for RE37079.complete
Subject Subject Range Query Range Percent Splice Strand
3R 21518945..21520034 283..1372 99 <- Minus
3R 21520383..21520614 51..282 100 <- Minus
3R 21523315..21523365 1..50 98   Minus

RE37079.hyp Sequence

Translation from 72 to 1133

> RE37079.hyp
MRSWPGLFWLLTLALLADGGRRESQLRIGKAINIFLRYGYLGISMRVIPL
NDNSEPDRWVFKEPTKNIYRNLSGLAESHEDTTPGIFHGDFHMEFCENRR
QLFQAYFRDFSIERMDKPWEAFTGGWFPDNAAKKLGINTSFIQGDYSYVL
VRVVRFRETGRLNAEIPVHQPLEPDVRSRMDQLQIGNITSAVRFMEDVGT
HYVNSYTTGNSLYQVFVYSRKNYSMIKERIKSKGLNGLSKLDLYNYFAPW
FAAHLGQIRSASANATVERWARRKLQYEYYVVKYVTLLKLHGNSTLLRSL
DSLLGNDAILQLDLKSLKPIFREEPEKESWYHEVLDNNVKLWELNMPQSH
PTR*

RE37079.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:09:22
Subject Length Description Subject Range Query Range Score Percent Strand
tsl-PC 353 CG6705-PC 1..353 1..353 1874 100 Plus
tsl-PA 353 CG6705-PA 1..353 1..353 1874 100 Plus
tsl-PB 353 CG6705-PB 1..353 1..353 1874 100 Plus

RE37079.pep Sequence

Translation from 72 to 1133

> RE37079.pep
MRSWPGLFWLLTLALLADGGRRESQLRIGKAINIFLRYGYLGISMRVIPL
NDNSEPDRWVFKEPTKNIYRNLSGLAESHEDTTPGIFHGDFHMEFCENRR
QLFQAYFRDFSIERMDKPWEAFTGGWFPDNAAKKLGINTSFIQGDYSYVL
VRVVRFRETGRLNAEIPVHQPLEPDVRSRMDQLQIGNITSAVRFMEDVGT
HYVNSYTTGNSLYQVFVYSRKNYSMIKERIKSKGLNGLSKLDLYNYFAPW
FAAHLGQIRSASANATVERWARRKLQYEYYVVKYVTLLKLHGNSTLLRSL
DSLLGNDAILQLDLKSLKPIFREEPEKESWYHEVLDNNVKLWELNMPQSH
PTR*

RE37079.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:09:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16968-PA 361 GF16968-PA 12..361 6..353 1631 84.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:09:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22581-PA 353 GG22581-PA 1..353 1..353 1852 97.7 Plus
Dere\GG11043-PA 129 GG11043-PA 1..129 225..353 654 96.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:09:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18715-PA 362 GH18715-PA 27..362 17..353 1563 83.4 Plus
Dgri\GH25309-PA 344 GH25309-PA 27..344 17..353 1434 77.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:05:44
Subject Length Description Subject Range Query Range Score Percent Strand
tsl-PC 353 CG6705-PC 1..353 1..353 1874 100 Plus
tsl-PA 353 CG6705-PA 1..353 1..353 1874 100 Plus
tsl-PB 353 CG6705-PB 1..353 1..353 1874 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:09:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22863-PA 361 GI22863-PA 25..361 17..353 1542 84.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:09:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23742-PA 357 GL23742-PA 24..357 20..353 1622 88 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:09:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19798-PA 357 GA19798-PA 24..357 20..353 1618 87.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:09:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23694-PA 353 GM23694-PA 1..353 1..353 1874 98.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:09:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18504-PA 353 GD18504-PA 1..353 1..353 1879 99.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:09:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14161-PA 367 GJ14161-PA 34..367 20..353 1613 87.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:09:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13020-PA 355 GK13020-PA 8..355 6..353 1637 85.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:09:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24088-PA 353 GE24088-PA 1..353 1..353 1864 98.3 Plus