Clone RE37350 Report

Search the DGRC for RE37350

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:373
Well:50
Vector:pFlc-1
Associated Gene/TranscriptCG17683-RA
Protein status:RE37350.pep: gold
Preliminary Size:1424
Sequenced Size:1749

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG17683 2001-12-14 Blastp of sequenced clone
CG17683 2002-01-01 Sim4 clustering to Release 2
CG17683 2003-01-01 Sim4 clustering to Release 3
CG17683 2008-04-29 Release 5.5 accounting
CG17683 2008-08-15 Release 5.9 accounting
CG17683 2008-12-18 5.12 accounting

Clone Sequence Records

RE37350.complete Sequence

1749 bp (1749 high quality bases) assembled on 2001-12-14

GenBank Submission: AY071338

> RE37350.complete
TTCCACAATTACCGCTATGTTTTGACGATAGCTTGGCTCACTGCACTAAA
TATTTGAATAAGTTCAGAAAGCGGTTTGGTGAATATATAAAATAAAAAAG
TTAAATATTATTTATTACGAAAACCATGTCGAGGTTGAGCAGAGCGCTGC
AGCTTACAGATATAGATGATTTTATTACGCCCTCACAGATATGCATTAAG
CCCGTGCAAATAGATAAGGCAAGGTCAAAGACTGGGGCAAAGATAAAGAT
AAAAGGTGACGGCTGCTTTGAGGAATCAGAGAGTGGAAATCTAAAACTTA
ATAAAGTTGATATTTCTCTGCAAGACTGTCTTGCGTGTTCTGGTTGCATC
ACTTCAGCTGAAGAAGTCCTTATCACGCAGCAGAGCCGAGAAGAGTTGCT
TAAGGTCCTTCAAGAGAATTCAAAGAATAAGGCCTCTGAAGACTGGGATA
ACGTGCGTACGATCGTGTTCACCCTTGCCACCCAGCCTATACTAAGCTTA
GCCTATCGCTATCAGATAGGTGTGGAGGATGCTGCCCGTCATCTTAATGG
GTATTTTCGCAGTTTGGGTGCCGACTATGTTTTGTCCACTAAGGTGGCGG
ACGATATTGCGCTGCTCGAATGTCGTCAAGAATTTGTAGATAGGTACCGC
GAAAATGAGAACTTGACCATGCTTAGCTCCTCTTGTCCGGGGTGGGTTTG
TTACGCGGAGAAAACACACGGAAACTTCTTATTGCCTTACGTTTCCACGA
CCCGATCTCCTCAGCAAATAATGGGAGTGCTTGTGAAGCAAATCCTTGCC
GATAAGATGAATGTTCCTGCGTCACGAATCTACCATGTGACCGTGATGCC
TTGCTACGACAAGAAGCTTGAGGCCTCTCGAGAGGACTTTTTCAGCAAGG
CAAATAACTCACGCGACGTAGACTGTGTAATCACTTCAGTTGAGGTGGAA
CAGTTGCTTAGTGAGGCTCAGCAGCCGCTGTCGCAGTACGATCTCCTTGA
TTTAGACTGGCCATGGTCTAATGTACGCCCAGAATTCATGGTATGGGCTC
ACGAGAAGACGCTATCTGGCGGTTACGCAGAACACATATTTAAGTACGCC
GCAAAACATATTTTCAACGAAGATTTAAAAACAGAGTTGGAATTCAAACA
GCTCAAAAACCGCGACTTTAGAGAAATTATACTTAAACAGAATGGCAAAA
CTGTCCTGAAATTTGCAATTGCTAACGGTTTCCGGAACATACAAAACTTG
GTACAAAAACTGAAGCGTGAAAAGGTATCAAATTACCACTTTGTTGAGGT
AATGGCCTGTCCCTCGGGCTGTATAAACGGAGGAGCACAAATACGTCCCA
CTACCGGACAGCACGTTCGCGAGCTTACCCGGAAACTGGAGGAATTATAC
CAGAATCTTCCACGGTCCGAACCCGAAAACTCCTTAACAAAACATATTTA
CAATGACTTTTTAGACGGCTTTCAAAGTGATAAATCATATGACGTGCTGC
ACACCCGTTACCATGATGTAGTATCTGAGCTCAGTATATCGCTTAATATA
AATTGGTAAACGTATTGTGCTTGATTATCTCTTTTAGTATATCGACAGTT
TCGGTAAAGGAATAAGGCCCACAAACAAATATTTAAAATTAAAAAAAAAA
ACTCATTTAAACGGGGTGAGATTAGTGACAATACCGTTTTAAACCCAAAA
ACTGTATGAATAACGAATAATATGATAAAATAGAAAAAAAAAAAAAAAA

RE37350.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:40:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG17683.e 2478 CG17683.e 46..1778 1..1734 8630 99.9 Plus
CG17683-RA 2046 CG17683-RA 46..1778 1..1734 8630 99.9 Plus
CG17683-RC 1854 CG17683-RC 187..1722 199..1734 7680 100 Plus
CG17683-RC 1854 CG17683-RC 2..188 1..188 900 99.4 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:43:53
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 19538..20334 937..1733 3985 100 Plus
chr2R 21145070 chr2R 18824..19483 280..939 3300 100 Plus
chr2R 21145070 chr2R 18442..18628 1..188 890 99.5 Plus
chr2R 21145070 chr2R 18677..18772 186..281 480 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:53:06 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:43:51
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 4132034..4132831 937..1734 3990 100 Plus
2R 25286936 2R 4131320..4131979 280..939 3300 100 Plus
2R 25286936 2R 4130938..4131124 1..188 890 99.5 Plus
2R 25286936 2R 4131173..4131268 186..281 480 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:07:44
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 4133233..4134030 937..1734 3990 100 Plus
2R 25260384 2R 4132519..4133178 280..939 3300 100 Plus
2R 25260384 2R 4132137..4132323 1..188 900 99.4 Plus
2R 25260384 2R 4132372..4132467 186..281 480 100 Plus
Blast to na_te.dros performed 2019-03-15 22:43:51
Subject Length Description Subject Range Query Range Score Percent Strand
Tabor 7345 Tabor TABOR 7345bp 2352..2448 359..264 122 59.8 Minus
blood 7410 blood BLOOD 7410bp 6911..6948 121..86 122 84.2 Minus
invader3 5484 invader3 INVADER3 5484bp 1846..1893 67..115 116 73.5 Plus

RE37350.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:44:54 Download gff for RE37350.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 18442..18628 1..188 99 -> Plus
chr2R 18680..18772 189..281 100 -> Plus
chr2R 18826..19483 282..939 100 -> Plus
chr2R 19541..20334 940..1733 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:13:13 Download gff for RE37350.complete
Subject Subject Range Query Range Percent Splice Strand
CG17683-RA 1..1434 126..1559 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:05:29 Download gff for RE37350.complete
Subject Subject Range Query Range Percent Splice Strand
CG17683-RA 1..1434 126..1559 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:31:09 Download gff for RE37350.complete
Subject Subject Range Query Range Percent Splice Strand
CG17683-RA 1..1434 126..1559 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:30:06 Download gff for RE37350.complete
Subject Subject Range Query Range Percent Splice Strand
CG17683-RA 1..1434 126..1559 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:33:37 Download gff for RE37350.complete
Subject Subject Range Query Range Percent Splice Strand
CG17683-RA 1..1434 126..1559 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:33:22 Download gff for RE37350.complete
Subject Subject Range Query Range Percent Splice Strand
CG17683-RA 2..1733 1..1733 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:05:29 Download gff for RE37350.complete
Subject Subject Range Query Range Percent Splice Strand
CG17683-RA 2..1733 1..1733 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:31:09 Download gff for RE37350.complete
Subject Subject Range Query Range Percent Splice Strand
CG17683-RA 1..1696 37..1733 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:30:06 Download gff for RE37350.complete
Subject Subject Range Query Range Percent Splice Strand
CG17683-RA 2..1733 1..1733 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:33:37 Download gff for RE37350.complete
Subject Subject Range Query Range Percent Splice Strand
CG17683-RA 1..1696 37..1733 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:44:54 Download gff for RE37350.complete
Subject Subject Range Query Range Percent Splice Strand
2R 4131176..4131268 189..281 100 -> Plus
2R 4130938..4131124 1..188 99 -> Plus
2R 4131322..4131979 282..939 100 -> Plus
2R 4132037..4132830 940..1733 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:44:54 Download gff for RE37350.complete
Subject Subject Range Query Range Percent Splice Strand
2R 4131176..4131268 189..281 100 -> Plus
2R 4130938..4131124 1..188 99 -> Plus
2R 4131322..4131979 282..939 100 -> Plus
2R 4132037..4132830 940..1733 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:44:54 Download gff for RE37350.complete
Subject Subject Range Query Range Percent Splice Strand
2R 4131176..4131268 189..281 100 -> Plus
2R 4130938..4131124 1..188 99 -> Plus
2R 4131322..4131979 282..939 100 -> Plus
2R 4132037..4132830 940..1733 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:31:09 Download gff for RE37350.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18443..18629 1..188 99 -> Plus
arm_2R 18681..18773 189..281 100 -> Plus
arm_2R 18827..19484 282..939 100 -> Plus
arm_2R 19542..20335 940..1733 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:06:16 Download gff for RE37350.complete
Subject Subject Range Query Range Percent Splice Strand
2R 4132521..4133178 282..939 100 -> Plus
2R 4133236..4134029 940..1733 100   Plus
2R 4132137..4132323 1..188 99 -> Plus
2R 4132375..4132467 189..281 100 -> Plus

RE37350.hyp Sequence

Translation from 125 to 1558

> RE37350.hyp
MSRLSRALQLTDIDDFITPSQICIKPVQIDKARSKTGAKIKIKGDGCFEE
SESGNLKLNKVDISLQDCLACSGCITSAEEVLITQQSREELLKVLQENSK
NKASEDWDNVRTIVFTLATQPILSLAYRYQIGVEDAARHLNGYFRSLGAD
YVLSTKVADDIALLECRQEFVDRYRENENLTMLSSSCPGWVCYAEKTHGN
FLLPYVSTTRSPQQIMGVLVKQILADKMNVPASRIYHVTVMPCYDKKLEA
SREDFFSKANNSRDVDCVITSVEVEQLLSEAQQPLSQYDLLDLDWPWSNV
RPEFMVWAHEKTLSGGYAEHIFKYAAKHIFNEDLKTELEFKQLKNRDFRE
IILKQNGKTVLKFAIANGFRNIQNLVQKLKREKVSNYHFVEVMACPSGCI
NGGAQIRPTTGQHVRELTRKLEELYQNLPRSEPENSLTKHIYNDFLDGFQ
SDKSYDVLHTRYHDVVSELSISLNINW*

RE37350.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:34:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG17683-PA 477 CG17683-PA 1..477 1..477 2484 100 Plus
CG17683-PC 473 CG17683-PC 1..473 1..477 2447 99.2 Plus
CG17683-PD 430 CG17683-PD 5..430 52..477 2223 99.8 Plus
CG17683-PE 296 CG17683-PE 1..296 182..477 1567 100 Plus

RE37350.pep Sequence

Translation from 125 to 1558

> RE37350.pep
MSRLSRALQLTDIDDFITPSQICIKPVQIDKARSKTGAKIKIKGDGCFEE
SESGNLKLNKVDISLQDCLACSGCITSAEEVLITQQSREELLKVLQENSK
NKASEDWDNVRTIVFTLATQPILSLAYRYQIGVEDAARHLNGYFRSLGAD
YVLSTKVADDIALLECRQEFVDRYRENENLTMLSSSCPGWVCYAEKTHGN
FLLPYVSTTRSPQQIMGVLVKQILADKMNVPASRIYHVTVMPCYDKKLEA
SREDFFSKANNSRDVDCVITSVEVEQLLSEAQQPLSQYDLLDLDWPWSNV
RPEFMVWAHEKTLSGGYAEHIFKYAAKHIFNEDLKTELEFKQLKNRDFRE
IILKQNGKTVLKFAIANGFRNIQNLVQKLKREKVSNYHFVEVMACPSGCI
NGGAQIRPTTGQHVRELTRKLEELYQNLPRSEPENSLTKHIYNDFLDGFQ
SDKSYDVLHTRYHDVVSELSISLNINW*

RE37350.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 20:38:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22738-PA 476 GF22738-PA 1..476 1..477 1836 69.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 20:38:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21400-PA 477 GG21400-PA 1..477 1..477 2265 86.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 20:38:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10760-PA 476 GH10760-PA 1..476 1..477 1891 71.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:17:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG17683-PA 477 CG17683-PA 1..477 1..477 2484 100 Plus
CG17683-PC 473 CG17683-PC 1..473 1..477 2447 99.2 Plus
CG17683-PD 430 CG17683-PD 5..430 52..477 2223 99.8 Plus
CG17683-PE 296 CG17683-PE 1..296 182..477 1567 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 20:38:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11683-PA 476 GI11683-PA 1..476 1..477 1952 73.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 20:38:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21135-PA 477 GL21135-PA 1..477 1..477 1979 75.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 20:38:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA29080-PA 477 GA29080-PA 1..477 1..477 1979 75.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 20:38:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20417-PA 478 GM20417-PA 1..478 1..477 2429 93.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 20:38:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17698-PA 288 GD17698-PA 1..268 1..268 1396 97 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 20:38:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13047-PA 476 GJ13047-PA 1..476 1..477 1942 73 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 20:38:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14772-PA 477 GK14772-PA 1..477 1..477 1969 75.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 20:38:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22682-PA 477 GE22682-PA 1..477 1..477 2326 89.1 Plus