BDGP Sequence Production Resources |
Search the DGRC for RE37354
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 373 |
Well: | 54 |
Vector: | pFlc-1 |
Associated Gene/Transcript | cib-RC |
Protein status: | RE37354.pep: gold |
Sequenced Size: | 899 |
Gene | Date | Evidence |
---|---|---|
cib-RC | 2010-01-14 | Manual selection by Sue Celniker |
899 bp assembled on 2010-04-19
GenBank Submission: BT120351.2
> RE37354.complete AGTATTAAATTTGTGACGTCAAGAGCTCCGCTTCGCCACCATCGAAGGCC CAGCTTCGCCAAGTGTACAGCTATACATAGAAACATATATCAGGCCGACC CCGCCAGCATCCCAGCTTAGTAGTCCGCTTCGCCAATCCAAAAAAAAAAC TAAATCAAGATGGCCGCCCCAGCACCAGCACTCAAGGATCTGCCCAAGGT GGCCGAGAACCTGAAAAGCCAGTTGGAGGGATTCAACCAGGACAAACTGA AGAACGCTAGCACCCAGGAGAAGATCATTCTTCCCACCGCCGAAGATGTG GCTGCCGAGAAGACCCAACAGTCGATCTTCGAGGGCATCACCGCTTTCAA TCAGAACAACTTGAAGCACACGGAGACCAACGAGAAGAACCCGTTGCCCG ATAAGGAAGGAGAAGGAGAAGAATCAGTTCATCGCCGGCATCGAGAACTT TGATGCGAAAAAGTTGAAGCACACCGAGACCAATGAGAAGAACGTGCTGC CCACCAAGGAGGTGATCGAGGCCGAGAAGCAGGCTTAAAATGGGGGCTCC AATGTGGTCCACTCCGATCCGAGATCCGAGATCTGAGATCCGATCCGATC CGATCCTCAGTCACCCCATCTCTCTTTTTCGACTCGCCGCATCTCACTCT TTATACGTATAAAGCTATTCCCTCTCATTTTTCAACTGCTACCAAGTTAT TCGAACCGCTGCGCATGCGCGTGATAGCAAAAGTATTTTACTATTATCGT ATTTCGGTTGTCCGTTTTTTTTTTTTTTTGCAATATTTTTACACATATAT ATATATATTTTTTGTATTAACAAGCAAGAGAGCCAGTCTCATTCCTACAG CGTAATTAACATAAAATAAACATTCGTCTATCCCAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
cib.e | 1339 | cib.e | 560..1036 | 408..885 | 2350 | 99.7 | Plus |
cib-RA | 1007 | cib-RA | 527..1003 | 408..885 | 2350 | 99.7 | Plus |
cib.h | 1394 | cib.h | 527..1003 | 408..885 | 2350 | 99.7 | Plus |
cib.e | 1339 | cib.e | 1..410 | 1..410 | 2050 | 100 | Plus |
cib-RA | 1007 | cib-RA | 109..517 | 1..409 | 2045 | 100 | Plus |
cib.h | 1394 | cib.h | 109..517 | 1..409 | 2045 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 4003387..4003861 | 408..884 | 2320 | 99.6 | Plus |
chrX | 22417052 | chrX | 3999341..3999499 | 1..159 | 780 | 99.4 | Plus |
chrX | 22417052 | chrX | 4002913..4003050 | 158..295 | 690 | 100 | Plus |
chrX | 22417052 | chrX | 4003121..4003237 | 294..410 | 585 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23542271 | X | 4110161..4110637 | 408..885 | 2340 | 99.8 | Plus |
X | 23542271 | X | 4106115..4106273 | 1..159 | 795 | 100 | Plus |
X | 23542271 | X | 4109687..4109824 | 158..295 | 690 | 100 | Plus |
X | 23542271 | X | 4109895..4110011 | 294..410 | 585 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23527363 | X | 4118259..4118735 | 408..885 | 2350 | 99.7 | Plus |
X | 23527363 | X | 4114213..4114371 | 1..159 | 795 | 100 | Plus |
X | 23527363 | X | 4117785..4117922 | 158..295 | 690 | 100 | Plus |
X | 23527363 | X | 4117993..4118109 | 294..410 | 585 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 4002915..4003050 | 160..295 | 100 | -> | Plus |
chrX | 4003123..4003236 | 296..409 | 100 | -> | Plus |
chrX | 3999341..3999499 | 1..159 | 99 | -> | Plus |
chrX | 4003389..4003861 | 410..884 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
cib-RC | 1..294 | 160..453 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
cib-RC | 1..294 | 160..453 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
cib-RB | 1..390 | 160..538 | 97 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
cib-RB | 1..390 | 160..538 | 97 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
cib-RC | 1..883 | 1..884 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
cib-RC | 1..883 | 1..884 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
cib-RC | 3..885 | 1..884 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
cib-RC | 3..885 | 1..884 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 4109897..4110010 | 296..409 | 100 | -> | Plus |
X | 4106115..4106273 | 1..159 | 100 | -> | Plus |
X | 4109689..4109824 | 160..295 | 100 | -> | Plus |
X | 4110163..4110636 | 410..884 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 4109897..4110010 | 296..409 | 100 | -> | Plus |
X | 4106115..4106273 | 1..159 | 100 | -> | Plus |
X | 4109689..4109824 | 160..295 | 100 | -> | Plus |
X | 4110163..4110636 | 410..884 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 4109897..4110010 | 296..409 | 100 | -> | Plus |
X | 4106115..4106273 | 1..159 | 100 | -> | Plus |
X | 4109689..4109824 | 160..295 | 100 | -> | Plus |
X | 4110163..4110636 | 410..884 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 4003930..4004043 | 296..409 | 100 | -> | Plus |
arm_X | 4000148..4000306 | 1..159 | 100 | -> | Plus |
arm_X | 4003722..4003857 | 160..295 | 100 | -> | Plus |
arm_X | 4004196..4004669 | 410..884 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 4118261..4118734 | 410..884 | 99 | Plus | |
X | 4114213..4114371 | 1..159 | 100 | -> | Plus |
X | 4117787..4117922 | 160..295 | 100 | -> | Plus |
X | 4117995..4118108 | 296..409 | 100 | -> | Plus |
Translation from 159 to 452
> RE37354.pep MAAPAPALKDLPKVAENLKSQLEGFNQDKLKNASTQEKIILPTAEDVAAE KTQQSIFEGITAFNQNNLKHTETNEKNPLPDKEGEGEESVHRRHREL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF20776-PA | 130 | GF20776-PA | 1..85 | 1..84 | 390 | 92.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG18692-PA | 129 | GG18692-PA | 1..84 | 1..84 | 422 | 98.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH24145-PA | 129 | GH24145-PA | 1..84 | 1..84 | 396 | 92.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
cib-PC | 97 | CG4944-PC | 1..97 | 1..97 | 495 | 100 | Plus |
cib-PE | 129 | CG4944-PE | 1..88 | 1..88 | 422 | 95.5 | Plus |
cib-PD | 129 | CG4944-PD | 1..88 | 1..88 | 422 | 95.5 | Plus |
cib-PB | 129 | CG4944-PB | 1..88 | 1..88 | 422 | 95.5 | Plus |
cib-PA | 129 | CG4944-PA | 1..88 | 1..88 | 422 | 95.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI16398-PA | 129 | GI16398-PA | 1..84 | 1..84 | 402 | 94 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL21390-PA | 129 | GL21390-PA | 1..84 | 1..84 | 396 | 92.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA18544-PA | 129 | GA18544-PA | 1..84 | 1..84 | 396 | 92.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM12325-PA | 129 | GM12325-PA | 1..84 | 1..84 | 422 | 98.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD16670-PA | 129 | GD16670-PA | 1..84 | 1..84 | 416 | 97.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ17019-PA | 129 | GJ17019-PA | 1..84 | 1..84 | 382 | 89.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK15570-PA | 143 | GK15570-PA | 15..98 | 1..84 | 396 | 92.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE16331-PA | 129 | GE16331-PA | 1..84 | 1..84 | 422 | 98.8 | Plus |
Translation from 159 to 452
> RE37354.hyp MAAPAPALKDLPKVAENLKSQLEGFNQDKLKNASTQEKIILPTAEDVAAE KTQQSIFEGITAFNQNNLKHTETNEKNPLPDKEGEGEESVHRRHREL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
cib-PC | 97 | CG4944-PC | 1..97 | 1..97 | 495 | 100 | Plus |
cib-PE | 129 | CG4944-PE | 1..88 | 1..88 | 422 | 95.5 | Plus |
cib-PD | 129 | CG4944-PD | 1..88 | 1..88 | 422 | 95.5 | Plus |
cib-PB | 129 | CG4944-PB | 1..88 | 1..88 | 422 | 95.5 | Plus |
cib-PA | 129 | CG4944-PA | 1..88 | 1..88 | 422 | 95.5 | Plus |