Clone RE37385 Report

Search the DGRC for RE37385

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:373
Well:85
Vector:pFlc-1
Associated Gene/Transcriptslbo-RA
Protein status:RE37385.pep: gold
Preliminary Size:1967
Sequenced Size:2801

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4354 2002-01-01 Sim4 clustering to Release 2
CG4354 2003-01-01 Sim4 clustering to Release 3
CG4354 2003-08-04 Blastp of sequenced clone
slbo 2008-04-29 Release 5.5 accounting
slbo 2008-08-15 Release 5.9 accounting
slbo 2008-12-18 5.12 accounting

Clone Sequence Records

RE37385.complete Sequence

2801 bp (2801 high quality bases) assembled on 2003-08-04

GenBank Submission: BT009992

> RE37385.complete
ACTGTTACAATTTACCACTCGTCGGCGACGGACGCGCGCTCTCCGCTGGC
CAAGAAAATCCAAATCGAAGAAAAGCTCGCTCAGCTAACGGTTCTTCAGG
AGCGTTTCTAACACCAGCACACGTACGTGTACGAGTACGAGAGTACTAGC
CAACGGCAGTCGTCAGGCCGTCTCGTATAAAATCTGTTGCATCACTGCCG
CGGCACTTCAGTCGTTCGAACGCGTGCGGCCGGAGAAGTGCAGTGTCGAG
TTAACAAAGTAAACAAACTGAATAAAACATTTTGCGCTAAGAATCGGAAA
CATAATAAGCAATAGTACGATGCTCGGCTGCAGTGACCACCCAGGCAGCC
TAAGATGAAGCATACGGAATAGCGAGCTATCCGAGTCGAACATTTCCAAA
GACCCACTTCTTACCTCAGTGCAATGCTTTAGGCGCCAAACGAGCAAAAG
TTTATTCCCAAATCTGAACTCTAAAAACAGCCAAAATTAACGCTCTACAA
GGAATCAAGATTCTACCCTCCTTCGCGCAACTGAAAATGCTGAACATGGA
GTCGCCGCAGATGTACGCCGATGCCGTTCAGACATTGGCCCAGCTGGACC
TCAAGAAGGAGCCTCCCCTGCAGCAGGCCACCATTGGCCAGATCACACTG
ACGGCCATGTCCACGGCGCAGCAGCAGCAGCAACAACAGCAGCAGCAACA
GCAGCAGCAACAGCAGCAGCAACAACAGCAGCAGCAGCAACCCCAGCAGC
AGACTACCGATGCGAACAACAACACGTCGCAGGACGCGGCACTCCTGGTC
AAGCAGCACGCCATGCACCAGATGCAACAGGTCGCCGCATTGGGCAGCAA
CAACAACCTGCTGCAGAAGCAGATGCTGCAGCAGTACTCCACTCAGACGG
ACCTGGACGAGCTGACCACCCAGGAGATCACGCTCGACCTGCAGCACCTG
ATAGACGACCAGTTCAGGGACACGGAAACGCTGGGCATCTTCAGCGACAT
GGTGACCAGTCCGGGCGGACTCTCGGCCACCCTGCCGCCGAGCGGAATGG
TCTCGGCGGCGGCGAAGGTCCTGCAGCAGCAGACCCTGCGGAACCAGCAC
GGCTACGGGGGCAGGGGAGGCGGTGGCGGAGCAGGAGGCGCCCTGGCCTA
CATGCCGCAGCCCGTGCACGCCACCTACAACAATTCCAGCGACGAGAACA
GCTCCGTGGGCTCCGACTCCAGCACGATCAAGGAGGAGCCCATCGACCCC
GAGTACAGGCGGCACCTGCAGGAGGCGGCTAGCCAGCAGGCCGCCTTCAT
GGGCAATGGAGCAGGCCTGTACAACGGCTACGGATCGGGGGCGAATGGCT
TGACCGGGGGCGGAAACCCACTCAACGGAGGCAACACCACGCCCAGCAGC
AACGGGAGCAACGGCAGCACGGGCAGCAGCAACGGCAGCCAGTTCACCAA
CCTGACGACGGCCAACGTCCTGGCGCACCACAACCTGCCCCACCTGGCGG
CCGCAGCAGGAGCACACAATCTGCTCAAGCAGCACAGCAAGCTGCACGCG
CAGCAGCAGCATCAGCAGCACCAGCAACAGCAGCAGCACCGCAAGCACAG
CAACAAGCATGTGGACAAGGGCACGGATGAGTACCGCAGGCGGCGGGAGC
GGAACAACATAGCGGTGCGCAAGAGCCGGGAGAAGGCTAAGGTGCGCTCC
CGCGAGGTGGAGGAGCGCGTGAAGAGCCTGCTCAAGGAGAAGGACGCCCT
CATTCGGCAGCTTGGTGAGATGACCAACGAGCTGCAGCTACACAAGCAGA
TCTACATGCAGCTAATGAACCACGCCAATCCCGAAGTGAGCCGCGTCTGC
CGCAGCTTCCTCAACACCAACGAACACTCGCTGTAGCCGCTGCCAGCTAA
AGCCAGTGTCCTGCGAGTTCTGTGTGTGCGTGAGTGCTTGAATGCTTGAG
TGCTCGTGTGTGTGTGTGTATGAGTGTGTGAGTGCTCCAGCCGTAAGTGT
GTGCGTGTGAGCGAGACTCTGCTAAATCAAAGATACAAATGCTGTGTGGG
TAGCTCGTAAGGTTCATTCTCCTCCTGCTCCTCATTGTCCTCTCTGGCCG
TAGACGATGGAGCGGTCGCGCCAAGTTGGTGGGCCGCTGCATCGCTTGGA
GACCAAACTCTTCTGCCGATCGCTGTGGCATTCCTTGTACATTTACTCTG
TCCCCATTTCTTGTTATCACTGTAAAGCATATTTTTGTACTTAATTCTAA
TTCTTAACGACTGTAACATATATATTTCGCACGTTTTTATACATAATCTT
ATACATTATATCTATCATAAAGTTAAGCCAAAGAAAAATGTTAAAAATAT
TAATGTAAAAAAGAATAACACGCAGGAACGAAGAACGAAAATACAAACTT
CAAAGCCTATTAACTATTTATACATCTAATTCAAATGTGTACAGTTCTCG
ACGGTGTGCGGCTTCGCTCTATGCTTGATGCCACGCCCACTCCCACGCCC
AGCCCTGCTTGACACACAACATTAGCAAATCTCTAGTTCGTAAGTCGGAG
AATCAAGCATCGCTTTACCTGCACAATCCCCAGAGGAAAGCCTCCCGAAA
TCAACCAACTTGTAGCGAATTCCACGGGTTCGCTTCCGAGAGCGTAGAAG
ATATGAATGCTATTAATTGTAAGGCAAACGCAATGTTCTCATTTTAATTT
ATATATTCGTAAATTAAATATACACAAACAAAGAAAACTGTAAAGCAAAT
CTAAACAAATTAAATAAAATTTACCTTATACAAAGAAAAAAAAAAAAAAA
A

RE37385.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:12:21
Subject Length Description Subject Range Query Range Score Percent Strand
slbo-RA 2785 slbo-RA 4..2785 4..2785 13895 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 01:59:47
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 20217485..20220267 2785..4 13640 99.4 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:53:09 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 01:59:45
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24331520..24334303 2787..4 13905 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:35:57
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 24332719..24335502 2787..4 13905 99.9 Minus
Blast to na_te.dros performed on 2019-03-16 01:59:45 has no hits.

RE37385.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 02:00:26 Download gff for RE37385.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 20217485..20218257 2014..2785 99 == Minus
chr2R 20218353..20218682 1589..1918 99 == Minus
chr2R 20218744..20219518 753..1527 93 == Minus
chr2R 20219604..20220270 1..667 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:13:15 Download gff for RE37385.complete
Subject Subject Range Query Range Percent Splice Strand
slbo-RA 1..1350 537..1886 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:51:43 Download gff for RE37385.complete
Subject Subject Range Query Range Percent Splice Strand
slbo-RA 1..1350 537..1886 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:13:13 Download gff for RE37385.complete
Subject Subject Range Query Range Percent Splice Strand
slbo-RA 1..1350 537..1886 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:21:00 Download gff for RE37385.complete
Subject Subject Range Query Range Percent Splice Strand
slbo-RA 1..1350 537..1886 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 04:54:21 Download gff for RE37385.complete
Subject Subject Range Query Range Percent Splice Strand
slbo-RA 1..1350 537..1886 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:36:43 Download gff for RE37385.complete
Subject Subject Range Query Range Percent Splice Strand
slbo-RA 1..2785 1..2785 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:51:43 Download gff for RE37385.complete
Subject Subject Range Query Range Percent Splice Strand
slbo-RA 1..2785 1..2785 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:13:13 Download gff for RE37385.complete
Subject Subject Range Query Range Percent Splice Strand
slbo-RA 2..2786 1..2785 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:21:00 Download gff for RE37385.complete
Subject Subject Range Query Range Percent Splice Strand
slbo-RA 1..2785 1..2785 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:54:21 Download gff for RE37385.complete
Subject Subject Range Query Range Percent Splice Strand
slbo-RA 2..2786 1..2785 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:00:26 Download gff for RE37385.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24331522..24334306 1..2785 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:00:26 Download gff for RE37385.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24331522..24334306 1..2785 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:00:26 Download gff for RE37385.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24331522..24334306 1..2785 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:13:13 Download gff for RE37385.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20219045..20221829 1..2785 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:57:33 Download gff for RE37385.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24332739..24335523 1..2785 99   Minus

RE37385.pep Sequence

Translation from 536 to 1885

> RE37385.pep
MLNMESPQMYADAVQTLAQLDLKKEPPLQQATIGQITLTAMSTAQQQQQQ
QQQQQQQQQQQQQQQQQQPQQQTTDANNNTSQDAALLVKQHAMHQMQQVA
ALGSNNNLLQKQMLQQYSTQTDLDELTTQEITLDLQHLIDDQFRDTETLG
IFSDMVTSPGGLSATLPPSGMVSAAAKVLQQQTLRNQHGYGGRGGGGGAG
GALAYMPQPVHATYNNSSDENSSVGSDSSTIKEEPIDPEYRRHLQEAASQ
QAAFMGNGAGLYNGYGSGANGLTGGGNPLNGGNTTPSSNGSNGSTGSSNG
SQFTNLTTANVLAHHNLPHLAAAAGAHNLLKQHSKLHAQQQHQQHQQQQQ
HRKHSNKHVDKGTDEYRRRRERNNIAVRKSREKAKVRSREVEERVKSLLK
EKDALIRQLGEMTNELQLHKQIYMQLMNHANPEVSRVCRSFLNTNEHSL*

RE37385.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:28:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13466-PA 450 GF13466-PA 1..450 1..449 1574 87.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:28:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19941-PA 450 GG19941-PA 1..450 1..449 2317 98.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:28:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20906-PA 473 GH20906-PA 1..473 1..449 1281 72.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:09:35
Subject Length Description Subject Range Query Range Score Percent Strand
slbo-PB 449 CG4354-PB 1..449 1..449 2308 100 Plus
slbo-PA 449 CG4354-PA 1..449 1..449 2308 100 Plus
CG43347-PD 2652 CG43347-PD 1497..1890 23..357 185 26 Plus
CG43347-PB 2666 CG43347-PB 1511..1904 23..357 185 26 Plus
CG43347-PC 2684 CG43347-PC 1529..1922 23..357 185 26 Plus
Smr-PG 3607 CG4013-PG 161..461 27..349 170 25.7 Plus
ctrip-PE 2930 CG42574-PE 577..892 8..349 169 26.8 Plus
ctrip-PA 3140 CG17735-PB 787..1102 8..349 169 26.8 Plus
ctrip-PB 3140 CG42574-PB 787..1102 8..349 169 26.8 Plus
ctrip-PJ 2929 CG42574-PJ 577..891 8..349 168 27.2 Plus
ctrip-PF 3139 CG42574-PF 787..1101 8..349 168 27.2 Plus
Smr-PF 3601 CG4013-PF 161..455 27..349 167 25.2 Plus
Smr-PE 3601 CG4013-PE 161..455 27..349 167 25.2 Plus
Smr-PD 3601 CG4013-PD 161..455 27..349 167 25.2 Plus
Smr-PF 3601 CG4013-PF 55..377 18..376 166 22.8 Plus
Smr-PE 3601 CG4013-PE 55..377 18..376 166 22.8 Plus
Smr-PD 3601 CG4013-PD 55..377 18..376 166 22.8 Plus
Hr38-PD 836 CG1864-PD 54..394 45..356 163 22.6 Plus
Hr38-PB 1078 CG1864-PB 296..636 45..356 163 22.6 Plus
Ptip-PA 2294 CG32133-PA 1123..1247 15..142 161 36.4 Plus
Cfp1-PB 643 CG17446-PB 565..634 45..127 160 45.8 Plus
Cfp1-PA 663 CG17446-PA 585..654 45..127 160 45.8 Plus
CG44085-PH 756 CG44085-PH 323..496 5..189 160 29.9 Plus
CG44085-PL 833 CG44085-PL 400..573 5..189 160 29.9 Plus
CG44085-PI 833 CG44085-PI 400..573 5..189 160 29.9 Plus
CG44085-PC 836 CG44085-PC 400..573 5..189 160 29.9 Plus
CG44085-PM 864 CG44085-PM 285..458 5..189 160 29.9 Plus
CG44085-PF 902 CG44085-PF 323..496 5..189 160 29.9 Plus
CG44085-PD 918 CG44085-PD 323..496 5..189 160 29.9 Plus
CG44085-PG 942 CG44085-PG 323..496 5..189 160 29.9 Plus
CG44085-PK 979 CG44085-PK 400..573 5..189 160 29.9 Plus
CG44085-PJ 979 CG44085-PJ 400..573 5..189 160 29.9 Plus
CG44085-PN 1007 CG44085-PN 400..573 5..189 160 29.9 Plus
CG44085-PP 2246 CG44085-PP 296..469 5..189 160 29.9 Plus
CG44085-PO 2381 CG44085-PO 285..458 5..189 160 29.9 Plus
sima-PC 869 CG45051-PC 104..413 33..366 158 21.6 Plus
sima-PA 1507 CG45051-PA 742..1051 33..366 158 21.6 Plus
sima-PD 1593 CG45051-PD 828..1137 33..366 158 21.6 Plus
ec-PA 1712 CG2904-PA 1439..1641 41..226 158 31.3 Plus
ec-PB 1746 CG2904-PB 1473..1675 41..226 158 31.3 Plus
ec-PC 1765 CG2904-PC 1492..1694 41..226 158 31.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:28:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18345-PA 454 GI18345-PA 1..454 1..449 1304 73.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:28:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20490-PA 455 GL20490-PA 1..455 1..449 1673 84 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:28:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18129-PA 455 GA18129-PA 1..455 1..449 1673 84 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:29:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11843-PA 449 GM11843-PA 1..449 1..449 2296 98.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:29:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24965-PA 403 GD24965-PA 1..403 1..449 1949 86.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:29:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\slbo-PA 453 GJ20741-PA 1..453 1..449 1334 76.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:29:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22090-PA 456 GK22090-PA 1..456 1..449 1492 77 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:29:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE11469-PA 456 GE11469-PA 1..456 1..449 2308 97.4 Plus

RE37385.hyp Sequence

Translation from 536 to 1885

> RE37385.hyp
MLNMESPQMYADAVQTLAQLDLKKEPPLQQATIGQITLTAMSTAQQQQQQ
QQQQQQQQQQQQQQQQQQPQQQTTDANNNTSQDAALLVKQHAMHQMQQVA
ALGSNNNLLQKQMLQQYSTQTDLDELTTQEITLDLQHLIDDQFRDTETLG
IFSDMVTSPGGLSATLPPSGMVSAAAKVLQQQTLRNQHGYGGRGGGGGAG
GALAYMPQPVHATYNNSSDENSSVGSDSSTIKEEPIDPEYRRHLQEAASQ
QAAFMGNGAGLYNGYGSGANGLTGGGNPLNGGNTTPSSNGSNGSTGSSNG
SQFTNLTTANVLAHHNLPHLAAAAGAHNLLKQHSKLHAQQQHQQHQQQQQ
HRKHSNKHVDKGTDEYRRRRERNNIAVRKSREKAKVRSREVEERVKSLLK
EKDALIRQLGEMTNELQLHKQIYMQLMNHANPEVSRVCRSFLNTNEHSL*

RE37385.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:20:44
Subject Length Description Subject Range Query Range Score Percent Strand
slbo-PB 449 CG4354-PB 1..449 1..449 2308 100 Plus
slbo-PA 449 CG4354-PA 1..449 1..449 2308 100 Plus
CG43347-PD 2652 CG43347-PD 1497..1890 23..357 185 26 Plus
CG43347-PB 2666 CG43347-PB 1511..1904 23..357 185 26 Plus
CG43347-PC 2684 CG43347-PC 1529..1922 23..357 185 26 Plus