BDGP Sequence Production Resources |
Search the DGRC for RE37471
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 374 |
Well: | 71 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG5359-RA |
Protein status: | RE37471.pep: gold |
Preliminary Size: | 522 |
Sequenced Size: | 1252 |
Gene | Date | Evidence |
---|---|---|
CG5359 | 2002-01-01 | Sim4 clustering to Release 2 |
CG5359 | 2002-04-26 | Blastp of sequenced clone |
CG5359 | 2003-01-01 | Sim4 clustering to Release 3 |
CG5359 | 2008-04-29 | Release 5.5 accounting |
CG5359 | 2008-08-15 | Release 5.9 accounting |
CG5359 | 2008-12-18 | 5.12 accounting |
1252 bp (1252 high quality bases) assembled on 2002-04-26
GenBank Submission: AY113461
> RE37471.complete AAAACATAGCAACCAAGATTTTCTTGGTGCTTTCTTAAACACTTTGAAAG GGAATTACGCTGAATTTGACAAAAGATGGCTGACAAACAGTCCACTGAGG AAACAACCAAATCCGTCCAGACTTTAACAGTGCCCAACCCAGCGGATAGG AAGTCGGAAAAGTCGGCGTCAGGAAGTCTGCACTCCGGCTCAGCCGATGG TTTGGAAAATCAAGAAAAGTCGGAAAAGCCCGGCGACCAGCCCACCGCCT ATAGCATGCGACCGGCCTTTGGGGAGATGTTTCCCCTGCCCACCATCAAG AGCATAATGAACAACGTTATGGCCGAGAAACTCAAAGACAAAACCTATGA CAAGGACGTCGCCAAGAAGTGGACCAGTGAGATCGCCGACGAGGTGAACC AGCAGATAGCCAGCAGCTCCCTGGTGAAGCGGTACAAGCACGTGGTCCAG GTGATGCTAGGCCAGGAGCTGGGTGCGGGGGCCACTTACAACTCGCGCTG CTGCTGGGATTGCGACTGCGACACTTCCGTCTCCGAGGTCTTCAGCAACA CCAGTCTCTTTTGCGTCTGTACAGTGTTTGGAACGTATCAGTACTAAAAC CGATTTCCCACAGAACTAGTTAGACTAAGGATTATACTTTAATGGGTAGG CACCGGGAACAAAGGGTTCATCACTTTCGATAGTCGACCTTCGTCGTGCT TCATTGGATGCGTACGTTCAGCGGATTCAGTATGCGGCCCGACATCACAG CCACGTCCAAGTCGCGATCGACGATGAAAAACAGAAACGGATGATTCACA GAGATCTGAATGGGCTTCGATTGGGCGCCGTAGTTGCCTAGAGAGTAAAA GGAAGTGTTTATTGCACTTTGTCTCGTGTTGCAGAGGCTGCAACTGTTGC AACACCATTAGGTTGGGCATTCGCAATGCGTTGCGGCTCAATGCCTCCAC TCCATTCCATTCAGGTGTGCTGCAATGCGAGACACTTACGCTTCAGCTGA TTGATGGGATGCGTACGGATGGTGACGTCTATGGATTGCTCAATGTGTCG CACGTAGACGCCCTTCTCCTCAGTCATGGGCCTGAAATCGGCGCGATTTG GTTCGAATACGTCGCAGCTGCAACGAAAGTAAAATGAAGCCAGGAACTGG AGCTATTACACCCATGCTTACATTCCCATCTGCAACAGAGAGCACAAAAA CCAAAGACACCTCAATAAAAACACAAAAATGCACTCTAAAAAAAAAAAAA AA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 5825532..5826123 | 1237..646 | 2900 | 99.3 | Minus |
chr3R | 27901430 | chr3R | 5826694..5827032 | 337..2 | 1600 | 98.8 | Minus |
chr3R | 27901430 | chr3R | 5826327..5826638 | 646..335 | 1500 | 98.7 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 9999773..10000369 | 1242..646 | 2970 | 99.8 | Minus |
3R | 32079331 | 3R | 10000940..10001275 | 337..2 | 1680 | 100 | Minus |
3R | 32079331 | 3R | 10000573..10000884 | 646..335 | 1560 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 9740604..9741200 | 1242..646 | 2970 | 99.8 | Minus |
3R | 31820162 | 3R | 9741771..9742106 | 337..2 | 1680 | 100 | Minus |
3R | 31820162 | 3R | 9741404..9741715 | 646..335 | 1560 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 5826327..5826635 | 338..646 | 98 | <- | Minus |
chr3R | 5826694..5827032 | 1..337 | 98 | Minus | |
chr3R | 5825532..5826122 | 647..1237 | 99 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5359-RB | 1..522 | 76..597 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5359-RB | 1..522 | 76..597 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5359-RA | 1..522 | 76..597 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5359-RA | 1..522 | 76..597 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5359-RA | 1..522 | 76..597 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5359-RA | 1..1236 | 2..1237 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5359-RA | 1..1236 | 2..1237 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5359-RA | 2..1237 | 2..1237 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5359-RA | 1..1236 | 2..1237 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5359-RA | 2..1237 | 2..1237 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 9999778..10000368 | 647..1237 | 100 | <- | Minus |
3R | 10000573..10000881 | 338..646 | 100 | <- | Minus |
3R | 10000940..10001275 | 1..337 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 9999778..10000368 | 647..1237 | 100 | <- | Minus |
3R | 10000573..10000881 | 338..646 | 100 | <- | Minus |
3R | 10000940..10001275 | 1..337 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 9999778..10000368 | 647..1237 | 100 | <- | Minus |
3R | 10000573..10000881 | 338..646 | 100 | <- | Minus |
3R | 10000940..10001275 | 1..337 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 5825500..5826090 | 647..1237 | 100 | <- | Minus |
arm_3R | 5826295..5826603 | 338..646 | 100 | <- | Minus |
arm_3R | 5826662..5826997 | 1..337 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 9740609..9741199 | 647..1237 | 100 | <- | Minus |
3R | 9741404..9741712 | 338..646 | 100 | <- | Minus |
3R | 9741771..9742106 | 1..337 | 99 | Minus |
Translation from 75 to 596
> RE37471.pep MADKQSTEETTKSVQTLTVPNPADRKSEKSASGSLHSGSADGLENQEKSE KPGDQPTAYSMRPAFGEMFPLPTIKSIMNNVMAEKLKDKTYDKDVAKKWT SEIADEVNQQIASSSLVKRYKHVVQVMLGQELGAGATYNSRCCWDCDCDT SVSEVFSNTSLFCVCTVFGTYQY*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF17142-PA | 163 | GF17142-PA | 1..160 | 1..163 | 626 | 73 | Plus |
Dana\GF23698-PA | 163 | GF23698-PA | 4..163 | 5..173 | 298 | 39 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG17311-PA | 173 | GG17311-PA | 1..173 | 1..173 | 818 | 87.3 | Plus |
Dere\GG15898-PA | 171 | GG15898-PA | 29..171 | 33..173 | 289 | 40.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH17964-PA | 127 | GH17964-PA | 2..127 | 48..173 | 569 | 81 | Plus |
Dgri\GH14539-PA | 194 | GH14539-PA | 17..194 | 6..173 | 266 | 35.4 | Plus |
Dgri\GH13948-PA | 194 | GH13948-PA | 17..194 | 6..173 | 266 | 35.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG5359-PC | 173 | CG5359-PC | 1..173 | 1..173 | 907 | 100 | Plus |
CG5359-PB | 173 | CG5359-PB | 1..173 | 1..173 | 907 | 100 | Plus |
CG5359-PA | 173 | CG5359-PA | 1..173 | 1..173 | 907 | 100 | Plus |
CG7276-PB | 171 | CG7276-PB | 2..171 | 10..173 | 285 | 39.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI22085-PA | 170 | GI22085-PA | 6..170 | 12..173 | 577 | 66.1 | Plus |
Dmoj\GI13110-PA | 187 | GI13110-PA | 72..187 | 58..173 | 271 | 46.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL27286-PA | 170 | GL27286-PA | 1..170 | 1..173 | 589 | 66.1 | Plus |
Dper\GL20985-PA | 181 | GL20985-PA | 34..181 | 26..173 | 296 | 41.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA18824-PA | 170 | GA18824-PA | 1..170 | 1..173 | 586 | 66.1 | Plus |
Dpse\GA23483-PA | 181 | GA23483-PA | 34..181 | 26..173 | 294 | 41.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM26198-PA | 170 | GM26198-PA | 1..170 | 1..173 | 848 | 92.5 | Plus |
Dsec\GM25527-PA | 171 | GM25527-PA | 57..171 | 59..173 | 290 | 46.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD20745-PA | 173 | GD20745-PA | 1..173 | 1..173 | 881 | 94.8 | Plus |
Dsim\GD14543-PA | 521 | GD14543-PA | 57..143 | 59..145 | 228 | 47.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ22903-PA | 92 | GJ22903-PA | 1..92 | 82..173 | 451 | 89.1 | Plus |
Dvir\GJ13857-PA | 196 | GJ13857-PA | 82..196 | 59..173 | 248 | 40 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK11896-PA | 160 | GK11896-PA | 5..160 | 29..173 | 568 | 70.5 | Plus |
Dwil\GK20480-PA | 253 | GK20480-PA | 138..253 | 58..173 | 269 | 41.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE24714-PA | 173 | GE24714-PA | 1..173 | 1..173 | 819 | 87.3 | Plus |
Dyak\GE23142-PA | 171 | GE23142-PA | 32..171 | 36..173 | 323 | 46.4 | Plus |
Dyak\GE22239-PA | 171 | GE22239-PA | 32..171 | 36..173 | 323 | 46.4 | Plus |
Translation from 75 to 596
> RE37471.hyp MADKQSTEETTKSVQTLTVPNPADRKSEKSASGSLHSGSADGLENQEKSE KPGDQPTAYSMRPAFGEMFPLPTIKSIMNNVMAEKLKDKTYDKDVAKKWT SEIADEVNQQIASSSLVKRYKHVVQVMLGQELGAGATYNSRCCWDCDCDT SVSEVFSNTSLFCVCTVFGTYQY*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG5359-PC | 173 | CG5359-PC | 1..173 | 1..173 | 907 | 100 | Plus |
CG5359-PB | 173 | CG5359-PB | 1..173 | 1..173 | 907 | 100 | Plus |
CG5359-PA | 173 | CG5359-PA | 1..173 | 1..173 | 907 | 100 | Plus |
CG7276-PB | 171 | CG7276-PB | 2..171 | 10..173 | 285 | 39.4 | Plus |