Clone RE37471 Report

Search the DGRC for RE37471

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:374
Well:71
Vector:pFlc-1
Associated Gene/TranscriptCG5359-RA
Protein status:RE37471.pep: gold
Preliminary Size:522
Sequenced Size:1252

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5359 2002-01-01 Sim4 clustering to Release 2
CG5359 2002-04-26 Blastp of sequenced clone
CG5359 2003-01-01 Sim4 clustering to Release 3
CG5359 2008-04-29 Release 5.5 accounting
CG5359 2008-08-15 Release 5.9 accounting
CG5359 2008-12-18 5.12 accounting

Clone Sequence Records

RE37471.complete Sequence

1252 bp (1252 high quality bases) assembled on 2002-04-26

GenBank Submission: AY113461

> RE37471.complete
AAAACATAGCAACCAAGATTTTCTTGGTGCTTTCTTAAACACTTTGAAAG
GGAATTACGCTGAATTTGACAAAAGATGGCTGACAAACAGTCCACTGAGG
AAACAACCAAATCCGTCCAGACTTTAACAGTGCCCAACCCAGCGGATAGG
AAGTCGGAAAAGTCGGCGTCAGGAAGTCTGCACTCCGGCTCAGCCGATGG
TTTGGAAAATCAAGAAAAGTCGGAAAAGCCCGGCGACCAGCCCACCGCCT
ATAGCATGCGACCGGCCTTTGGGGAGATGTTTCCCCTGCCCACCATCAAG
AGCATAATGAACAACGTTATGGCCGAGAAACTCAAAGACAAAACCTATGA
CAAGGACGTCGCCAAGAAGTGGACCAGTGAGATCGCCGACGAGGTGAACC
AGCAGATAGCCAGCAGCTCCCTGGTGAAGCGGTACAAGCACGTGGTCCAG
GTGATGCTAGGCCAGGAGCTGGGTGCGGGGGCCACTTACAACTCGCGCTG
CTGCTGGGATTGCGACTGCGACACTTCCGTCTCCGAGGTCTTCAGCAACA
CCAGTCTCTTTTGCGTCTGTACAGTGTTTGGAACGTATCAGTACTAAAAC
CGATTTCCCACAGAACTAGTTAGACTAAGGATTATACTTTAATGGGTAGG
CACCGGGAACAAAGGGTTCATCACTTTCGATAGTCGACCTTCGTCGTGCT
TCATTGGATGCGTACGTTCAGCGGATTCAGTATGCGGCCCGACATCACAG
CCACGTCCAAGTCGCGATCGACGATGAAAAACAGAAACGGATGATTCACA
GAGATCTGAATGGGCTTCGATTGGGCGCCGTAGTTGCCTAGAGAGTAAAA
GGAAGTGTTTATTGCACTTTGTCTCGTGTTGCAGAGGCTGCAACTGTTGC
AACACCATTAGGTTGGGCATTCGCAATGCGTTGCGGCTCAATGCCTCCAC
TCCATTCCATTCAGGTGTGCTGCAATGCGAGACACTTACGCTTCAGCTGA
TTGATGGGATGCGTACGGATGGTGACGTCTATGGATTGCTCAATGTGTCG
CACGTAGACGCCCTTCTCCTCAGTCATGGGCCTGAAATCGGCGCGATTTG
GTTCGAATACGTCGCAGCTGCAACGAAAGTAAAATGAAGCCAGGAACTGG
AGCTATTACACCCATGCTTACATTCCCATCTGCAACAGAGAGCACAAAAA
CCAAAGACACCTCAATAAAAACACAAAAATGCACTCTAAAAAAAAAAAAA
AA

RE37471.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:11:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG5359-RA 1384 CG5359-RA 121..1361 2..1242 6190 99.9 Plus
CG5359.a 1381 CG5359.a 121..1358 2..1242 6120 99.6 Plus
CG5359-RB 755 CG5359-RB 42..686 2..646 3225 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 19:48:29
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 5825532..5826123 1237..646 2900 99.3 Minus
chr3R 27901430 chr3R 5826694..5827032 337..2 1600 98.8 Minus
chr3R 27901430 chr3R 5826327..5826638 646..335 1500 98.7 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:53:12 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 19:48:27
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9999773..10000369 1242..646 2970 99.8 Minus
3R 32079331 3R 10000940..10001275 337..2 1680 100 Minus
3R 32079331 3R 10000573..10000884 646..335 1560 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:41:58
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 9740604..9741200 1242..646 2970 99.8 Minus
3R 31820162 3R 9741771..9742106 337..2 1680 100 Minus
3R 31820162 3R 9741404..9741715 646..335 1560 100 Minus
Blast to na_te.dros performed on 2019-03-15 19:48:27 has no hits.

RE37471.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 19:49:16 Download gff for RE37471.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 5826327..5826635 338..646 98 <- Minus
chr3R 5826694..5827032 1..337 98   Minus
chr3R 5825532..5826122 647..1237 99 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:13:18 Download gff for RE37471.complete
Subject Subject Range Query Range Percent Splice Strand
CG5359-RB 1..522 76..597 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:56:13 Download gff for RE37471.complete
Subject Subject Range Query Range Percent Splice Strand
CG5359-RB 1..522 76..597 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:58:33 Download gff for RE37471.complete
Subject Subject Range Query Range Percent Splice Strand
CG5359-RA 1..522 76..597 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:49:31 Download gff for RE37471.complete
Subject Subject Range Query Range Percent Splice Strand
CG5359-RA 1..522 76..597 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:24:35 Download gff for RE37471.complete
Subject Subject Range Query Range Percent Splice Strand
CG5359-RA 1..522 76..597 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:35:39 Download gff for RE37471.complete
Subject Subject Range Query Range Percent Splice Strand
CG5359-RA 1..1236 2..1237 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:56:13 Download gff for RE37471.complete
Subject Subject Range Query Range Percent Splice Strand
CG5359-RA 1..1236 2..1237 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:58:33 Download gff for RE37471.complete
Subject Subject Range Query Range Percent Splice Strand
CG5359-RA 2..1237 2..1237 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:49:32 Download gff for RE37471.complete
Subject Subject Range Query Range Percent Splice Strand
CG5359-RA 1..1236 2..1237 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:24:35 Download gff for RE37471.complete
Subject Subject Range Query Range Percent Splice Strand
CG5359-RA 2..1237 2..1237 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:49:16 Download gff for RE37471.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9999778..10000368 647..1237 100 <- Minus
3R 10000573..10000881 338..646 100 <- Minus
3R 10000940..10001275 1..337 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:49:16 Download gff for RE37471.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9999778..10000368 647..1237 100 <- Minus
3R 10000573..10000881 338..646 100 <- Minus
3R 10000940..10001275 1..337 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:49:16 Download gff for RE37471.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9999778..10000368 647..1237 100 <- Minus
3R 10000573..10000881 338..646 100 <- Minus
3R 10000940..10001275 1..337 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:58:33 Download gff for RE37471.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5825500..5826090 647..1237 100 <- Minus
arm_3R 5826295..5826603 338..646 100 <- Minus
arm_3R 5826662..5826997 1..337 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:21:24 Download gff for RE37471.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9740609..9741199 647..1237 100 <- Minus
3R 9741404..9741712 338..646 100 <- Minus
3R 9741771..9742106 1..337 99   Minus

RE37471.pep Sequence

Translation from 75 to 596

> RE37471.pep
MADKQSTEETTKSVQTLTVPNPADRKSEKSASGSLHSGSADGLENQEKSE
KPGDQPTAYSMRPAFGEMFPLPTIKSIMNNVMAEKLKDKTYDKDVAKKWT
SEIADEVNQQIASSSLVKRYKHVVQVMLGQELGAGATYNSRCCWDCDCDT
SVSEVFSNTSLFCVCTVFGTYQY*

RE37471.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 01:23:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17142-PA 163 GF17142-PA 1..160 1..163 626 73 Plus
Dana\GF23698-PA 163 GF23698-PA 4..163 5..173 298 39 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 01:23:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17311-PA 173 GG17311-PA 1..173 1..173 818 87.3 Plus
Dere\GG15898-PA 171 GG15898-PA 29..171 33..173 289 40.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 01:23:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17964-PA 127 GH17964-PA 2..127 48..173 569 81 Plus
Dgri\GH14539-PA 194 GH14539-PA 17..194 6..173 266 35.4 Plus
Dgri\GH13948-PA 194 GH13948-PA 17..194 6..173 266 35.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:03:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG5359-PC 173 CG5359-PC 1..173 1..173 907 100 Plus
CG5359-PB 173 CG5359-PB 1..173 1..173 907 100 Plus
CG5359-PA 173 CG5359-PA 1..173 1..173 907 100 Plus
CG7276-PB 171 CG7276-PB 2..171 10..173 285 39.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 01:23:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22085-PA 170 GI22085-PA 6..170 12..173 577 66.1 Plus
Dmoj\GI13110-PA 187 GI13110-PA 72..187 58..173 271 46.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 01:23:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL27286-PA 170 GL27286-PA 1..170 1..173 589 66.1 Plus
Dper\GL20985-PA 181 GL20985-PA 34..181 26..173 296 41.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 01:23:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18824-PA 170 GA18824-PA 1..170 1..173 586 66.1 Plus
Dpse\GA23483-PA 181 GA23483-PA 34..181 26..173 294 41.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 01:23:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26198-PA 170 GM26198-PA 1..170 1..173 848 92.5 Plus
Dsec\GM25527-PA 171 GM25527-PA 57..171 59..173 290 46.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 01:23:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20745-PA 173 GD20745-PA 1..173 1..173 881 94.8 Plus
Dsim\GD14543-PA 521 GD14543-PA 57..143 59..145 228 47.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 01:23:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22903-PA 92 GJ22903-PA 1..92 82..173 451 89.1 Plus
Dvir\GJ13857-PA 196 GJ13857-PA 82..196 59..173 248 40 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 01:23:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11896-PA 160 GK11896-PA 5..160 29..173 568 70.5 Plus
Dwil\GK20480-PA 253 GK20480-PA 138..253 58..173 269 41.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 01:23:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24714-PA 173 GE24714-PA 1..173 1..173 819 87.3 Plus
Dyak\GE23142-PA 171 GE23142-PA 32..171 36..173 323 46.4 Plus
Dyak\GE22239-PA 171 GE22239-PA 32..171 36..173 323 46.4 Plus

RE37471.hyp Sequence

Translation from 75 to 596

> RE37471.hyp
MADKQSTEETTKSVQTLTVPNPADRKSEKSASGSLHSGSADGLENQEKSE
KPGDQPTAYSMRPAFGEMFPLPTIKSIMNNVMAEKLKDKTYDKDVAKKWT
SEIADEVNQQIASSSLVKRYKHVVQVMLGQELGAGATYNSRCCWDCDCDT
SVSEVFSNTSLFCVCTVFGTYQY*

RE37471.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:40:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG5359-PC 173 CG5359-PC 1..173 1..173 907 100 Plus
CG5359-PB 173 CG5359-PB 1..173 1..173 907 100 Plus
CG5359-PA 173 CG5359-PA 1..173 1..173 907 100 Plus
CG7276-PB 171 CG7276-PB 2..171 10..173 285 39.4 Plus