Clone RE37648 Report

Search the DGRC for RE37648

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:376
Well:48
Vector:pFlc-1
Associated Gene/Transcripthth-RF
Protein status:RE37648.pep: gold
Sequenced Size:2295

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG17117 2007-03-28 Manual selection by Ken Wan
hth 2008-04-29 Release 5.5 accounting
hth 2008-08-15 Release 5.9 accounting
hth 2008-12-18 5.12 accounting
CG17117 2011-03-01 Transcript Validation

Clone Sequence Records

RE37648.complete Sequence

2295 bp (2295 high quality bases) assembled on 2006-01-09

GenBank Submission: BT024210

> RE37648.complete
AGTCTACAAATAAACAACACAAGAAACACTTTGGAAATCGCGCGCGTTTT
TCCATCGCGCGAACAAAACAATCACGTTTTTTAGTGTGTTTTTCAATCAC
AATCGAAAAGTTCTCCTTTTCACAATTGAAGGCCAAAATAAATACTGTTA
TTTGAGGGCCACGGAGGGAATTTCTTTCAACGAGGGGATCCCGCCGATCC
CCCCGCAAAAACAAAGAAACACGCAAATTGCCGTCGCAAAAACACAACAG
AATATATTGCATTATATATTAACAATATAATTTGTTCATCTCTAGTAACG
TAGTATGTAGAAGCAGCTGTGATAAATAGTGCGCATATTATACGAAAAAA
GCAAAAAGAGTATACGACAAACAAATAAAAATTAAAAGCAACCACAACTA
CTACTATAAAAATAACCAAGGAAAAGGCAAGGAAACTCGCAAAACGAGAG
AGAGAGGAAAAGGGAAAAAACGCCATGGATTTATGACAACAACAAATGCA
ACCCAGTAACAAATGATGTTGCAGCAACTACTACAATACACGAGTATACC
AAGAACATCAACAACAACAACTGCAACGGCAACCAACAACAAATTGTATA
CGATTTTTATAAACCAAACAAATGCTATGTAAATAATTATTATAACAAAC
ACACAAGTAAAAAAAACATTCAAAACCAGATCTCCCGCTCTAGAAAACAA
ACAACAAACGCGCGCGTAACAAAAACGACAACATCAACAATACAACAAGT
ATACAAACGTAATAATAATACATAAAATCTAAACAAATGTGCCTGTGTTA
AAAAAAAAGAAAGCAAAATCAAGAAGCAAAGCGTTCAAAAAGCAAAGGCT
TCCCAATACATGAAAAAAGTGCAAAACATATATAAAAATCCAAGAAAATA
ACATCCAAAACTGAAGAACTGGAAAAGCCAAGAGTAAATCTAAGGACTCC
ACACGGGCAGCTACAGTAGAGCTTCCCTAAAACCGAAGCAGTTGCAGCGG
CGGAGCGGGACGTCGGTCAGTGTGTTGCGCCCCCATTTGTTGTTCCTACT
GTAAAAAGTGGCACAAATCGGGTTAGACGTCGCTCCCAGAGCATTAATGG
CTCAGCCCAGGTATGACGATGGCCTACACGGCTACGGCATGGACTCCGGA
GCCGCAGCAGCGGCCATGTACGATCCACACGCCGGTCACCGGCCGCCCGG
ACTGCAGGGCCTCCCCTCGCACCACTCTCCGCACATGACGCACGCAGCGG
CGGCGGCGGCCACAGTGGGCATGCACGGCTACCATTCGGGGGCCGGGGGT
CATGGAACACCTAGTCATGTATCGCCGGTCGGTAATCACCTAATGGGCGC
AATACCCGAAGTACACAAACGTGATAAGGATGCGATTTATGAACATCCGC
TATTCCCGCTTTTGGCGCTGATCTTTGAGAAGTGCGAATTGGCCACATGT
ACGCCAAGGGAGCCCGGTGTGCAAGGTGGCGATGTCTGTTCGTCGGAATC
GTTCAACGAGGATATTGCAATGTTCAGTAAACAGATAAGATCACAGAAAC
CCTATTATACCGCAGATCCCGAAGTCGACTCACTGATGGTGCAAGCAATA
CAAGTACTTCGGTTTCACCTTTTAGAATTAGAAAAAGTACACGAGTTATG
CGATAACTTCTGTCATCGGTATATATCGTGTTTAAAGGGTAAAATGCCAA
TAGATTTAGTGATCGACGAACGGGACACCACCAAACCACCGGAGTTGGGA
TCGGCGAACGGAGAAGGGCGCAGCAACGCCGACTCCACATCGCACACCGA
TGGAGCTAGTACACCAGACGTTGTGAGTACCCCCTTCGCGGGAGCACATG
GTCCTATATTGGCGAGCTACAATGCGGTGGTGCACCCATGTTCGTAGTAC
GATAACGACCTTCTTGCAAAAACGAAGCGGGTGCTCACAATGCCCTGGGA
TTAAATGAATCAATAATAATAATTGCGATCAATCAATACGAAATGCCAAT
CGAGCGAATAACCGAGCGATAACCACAAAAAAAGAAAGAAAAGAAAGTAA
AGAAATGAATGTTGCTGCACACTGTTCAAGCAAATTAAGTAAAATTAATT
CACTTTGTGCGAAAACAAACATAATATTAATACTGATGAATTCAAATCCA
AATCCGAACGCAGAAGAAGTTGTACGTCATTATGAACACACACAAAACAC
CCACACACACATTGTAAATTAGTCAGAATCAGTAAATGAAAACAAAAAAA
AAAAAACATACAAAAAGCGAAGAAAGCCCAAAAAAAAAAAAAAAA

RE37648.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:22:38
Subject Length Description Subject Range Query Range Score Percent Strand
hth.d 4292 hth.d 162..2453 6..2295 11320 99.7 Plus
hth-RF 3891 hth-RF 615..2906 6..2295 11320 99.7 Plus
hth.g 3891 hth.g 615..2906 6..2295 11320 99.7 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 14:12:17
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 6438547..6439652 1111..6 5470 99.6 Minus
chr3R 27901430 chr3R 6410913..6411557 2279..1637 3110 99.5 Minus
chr3R 27901430 chr3R 6430662..6430943 1392..1111 1410 100 Minus
chr3R 27901430 chr3R 6428364..6428511 1540..1393 710 98.6 Minus
chr3R 27901430 chr3R 6417026..6417080 1639..1585 275 100 Minus
chr3R 27901430 chr3R 6419163..6419216 1585..1532 270 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:53:15 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 14:12:15
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10612985..10614090 1111..6 5515 99.9 Minus
3R 32079331 3R 10585268..10585928 2295..1637 3175 99.4 Minus
3R 32079331 3R 10605088..10605369 1392..1111 1410 100 Minus
3R 32079331 3R 10602786..10602933 1540..1393 710 98.6 Minus
3R 32079331 3R 10591406..10591460 1639..1585 275 100 Minus
3R 32079331 3R 10593551..10593604 1585..1532 270 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:14:51
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 10353816..10354921 1111..6 5515 99.9 Minus
3R 31820162 3R 10326099..10326759 2295..1637 3195 99.3 Minus
3R 31820162 3R 10345919..10346200 1392..1111 1410 100 Minus
3R 31820162 3R 10343617..10343764 1540..1393 710 98.6 Minus
3R 31820162 3R 10332237..10332291 1639..1585 275 100 Minus
3R 31820162 3R 10334382..10334435 1585..1532 270 100 Minus
Blast to na_te.dros performed on 2019-03-15 14:12:16 has no hits.

RE37648.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 14:12:57 Download gff for RE37648.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 6410960..6411557 1637..2233 99 <- Minus
chr3R 6417029..6417079 1586..1636 100 <- Minus
chr3R 6419163..6419213 1535..1585 100 <- Minus
chr3R 6428370..6428511 1393..1534 99 <- Minus
chr3R 6430662..6430942 1112..1392 100 <- Minus
chr3R 6438547..6439065 593..1111 99 == Minus
chr3R 6439137..6439656 1..521 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:37:46 Download gff for RE37648.complete
Subject Subject Range Query Range Percent Splice Strand
hth-RF 1..801 1097..1897 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:39:42 Download gff for RE37648.complete
Subject Subject Range Query Range Percent Splice Strand
hth-RF 1..801 1097..1897 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 00:23:25 Download gff for RE37648.complete
Subject Subject Range Query Range Percent Splice Strand
hth-RF 1..801 1097..1897 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:15:11 Download gff for RE37648.complete
Subject Subject Range Query Range Percent Splice Strand
hth-RF 1..801 1097..1897 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:54:29 Download gff for RE37648.complete
Subject Subject Range Query Range Percent Splice Strand
hth-RF 1..801 1097..1897 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:37:44 Download gff for RE37648.complete
Subject Subject Range Query Range Percent Splice Strand
hth-RF 157..2437 1..2279 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:39:41 Download gff for RE37648.complete
Subject Subject Range Query Range Percent Splice Strand
hth-RF 157..2437 1..2279 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:23:25 Download gff for RE37648.complete
Subject Subject Range Query Range Percent Splice Strand
hth-RF 182..2462 1..2279 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:15:11 Download gff for RE37648.complete
Subject Subject Range Query Range Percent Splice Strand
hth-RF 157..2437 1..2279 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:54:29 Download gff for RE37648.complete
Subject Subject Range Query Range Percent Splice Strand
hth-RF 182..2462 1..2279 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:12:57 Download gff for RE37648.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10585284..10585928 1637..2279 99 <- Minus
3R 10591409..10591459 1586..1636 100 <- Minus
3R 10593551..10593601 1535..1585 100 <- Minus
3R 10602792..10602933 1393..1534 99 <- Minus
3R 10605088..10605368 1112..1392 100 <- Minus
3R 10612985..10614094 1..1111 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:12:57 Download gff for RE37648.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10585284..10585928 1637..2279 99 <- Minus
3R 10591409..10591459 1586..1636 100 <- Minus
3R 10593551..10593601 1535..1585 100 <- Minus
3R 10602792..10602933 1393..1534 99 <- Minus
3R 10605088..10605368 1112..1392 100 <- Minus
3R 10612985..10614094 1..1111 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:12:57 Download gff for RE37648.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10585284..10585928 1637..2279 99 <- Minus
3R 10591409..10591459 1586..1636 100 <- Minus
3R 10593551..10593601 1535..1585 100 <- Minus
3R 10602792..10602933 1393..1534 99 <- Minus
3R 10605088..10605368 1112..1392 100 <- Minus
3R 10612985..10614094 1..1111 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:23:25 Download gff for RE37648.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6411006..6411650 1637..2279 99 <- Minus
arm_3R 6417131..6417181 1586..1636 100 <- Minus
arm_3R 6419273..6419323 1535..1585 100 <- Minus
arm_3R 6428514..6428655 1393..1534 99 <- Minus
arm_3R 6430810..6431090 1112..1392 100 <- Minus
arm_3R 6438707..6439816 1..1111 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:02:22 Download gff for RE37648.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10326115..10326759 1637..2279 99 <- Minus
3R 10332240..10332290 1586..1636 100 <- Minus
3R 10334382..10334432 1535..1585 100 <- Minus
3R 10343623..10343764 1393..1534 99 <- Minus
3R 10345919..10346199 1112..1392 100 <- Minus
3R 10353816..10354925 1..1111 99   Minus

RE37648.pep Sequence

Translation from 1096 to 1896

> RE37648.pep
MAQPRYDDGLHGYGMDSGAAAAAMYDPHAGHRPPGLQGLPSHHSPHMTHA
AAAAATVGMHGYHSGAGGHGTPSHVSPVGNHLMGAIPEVHKRDKDAIYEH
PLFPLLALIFEKCELATCTPREPGVQGGDVCSSESFNEDIAMFSKQIRSQ
KPYYTADPEVDSLMVQAIQVLRFHLLELEKVHELCDNFCHRYISCLKGKM
PIDLVIDERDTTKPPELGSANGEGRSNADSTSHTDGASTPDVVSTPFAGA
HGPILASYNAVVHPCS*

RE37648.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 13:27:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17520-PA 487 GF17520-PA 1..242 1..242 1295 100 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 13:27:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17283-PA 487 GG17283-PA 1..242 1..242 1295 100 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 13:27:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19106-PA 456 GH19106-PA 1..227 15..242 1180 97.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:37:50
Subject Length Description Subject Range Query Range Score Percent Strand
hth-PI 266 CG17117-PI 1..266 1..266 1442 100 Plus
hth-PF 266 CG17117-PF 1..266 1..266 1442 100 Plus
hth-PE 266 CG17117-PE 1..245 1..245 1319 99.6 Plus
hth-PA 472 CG17117-PA 1..242 1..242 1312 100 Plus
hth-PC 487 CG17117-PC 1..242 1..242 1312 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 13:27:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23559-PA 472 GI23559-PA 1..227 15..242 1186 98.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 13:27:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23827-PA 266 GL23827-PA 1..245 1..245 1285 98.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 13:27:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14330-PE 266 GA14330-PE 1..266 1..266 1410 100 Plus
Dpse\GA14330-PC 487 GA14330-PC 1..242 1..242 1296 100 Plus
Dpse\GA14330-PF 266 GA14330-PF 1..245 1..245 1295 99.6 Plus
Dpse\GA14330-PG 471 GA14330-PG 1..242 1..242 1293 100 Plus
Dpse\GA14330-PB 471 GA14330-PB 1..242 1..242 1293 100 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 13:27:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26167-PA 487 GM26167-PA 1..242 1..242 1295 100 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 13:27:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20718-PA 487 GD20718-PA 1..242 1..242 1295 100 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 13:27:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23538-PA 470 GJ23538-PA 1..241 1..242 1262 98.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 13:27:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22581-PA 486 GK22581-PA 1..241 1..242 1269 98.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 13:27:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24684-PA 487 GE24684-PA 1..242 1..242 1295 100 Plus

RE37648.hyp Sequence

Translation from 1096 to 1896

> RE37648.hyp
MAQPRYDDGLHGYGMDSGAAAAAMYDPHAGHRPPGLQGLPSHHSPHMTHA
AAAAATVGMHGYHSGAGGHGTPSHVSPVGNHLMGAIPEVHKRDKDAIYEH
PLFPLLALIFEKCELATCTPREPGVQGGDVCSSESFNEDIAMFSKQIRSQ
KPYYTADPEVDSLMVQAIQVLRFHLLELEKVHELCDNFCHRYISCLKGKM
PIDLVIDERDTTKPPELGSANGEGRSNADSTSHTDGASTPDVVSTPFAGA
HGPILASYNAVVHPCS*

RE37648.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:06:20
Subject Length Description Subject Range Query Range Score Percent Strand
hth-PI 266 CG17117-PI 1..266 1..266 1442 100 Plus
hth-PF 266 CG17117-PF 1..266 1..266 1442 100 Plus
hth-PE 266 CG17117-PE 1..245 1..245 1319 99.6 Plus
hth-PA 472 CG17117-PA 1..242 1..242 1312 100 Plus
hth-PC 487 CG17117-PC 1..242 1..242 1312 100 Plus