BDGP Sequence Production Resources |
Search the DGRC for RE37648
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 376 |
Well: | 48 |
Vector: | pFlc-1 |
Associated Gene/Transcript | hth-RF |
Protein status: | RE37648.pep: gold |
Sequenced Size: | 2295 |
Gene | Date | Evidence |
---|---|---|
CG17117 | 2007-03-28 | Manual selection by Ken Wan |
hth | 2008-04-29 | Release 5.5 accounting |
hth | 2008-08-15 | Release 5.9 accounting |
hth | 2008-12-18 | 5.12 accounting |
CG17117 | 2011-03-01 | Transcript Validation |
2295 bp (2295 high quality bases) assembled on 2006-01-09
GenBank Submission: BT024210
> RE37648.complete AGTCTACAAATAAACAACACAAGAAACACTTTGGAAATCGCGCGCGTTTT TCCATCGCGCGAACAAAACAATCACGTTTTTTAGTGTGTTTTTCAATCAC AATCGAAAAGTTCTCCTTTTCACAATTGAAGGCCAAAATAAATACTGTTA TTTGAGGGCCACGGAGGGAATTTCTTTCAACGAGGGGATCCCGCCGATCC CCCCGCAAAAACAAAGAAACACGCAAATTGCCGTCGCAAAAACACAACAG AATATATTGCATTATATATTAACAATATAATTTGTTCATCTCTAGTAACG TAGTATGTAGAAGCAGCTGTGATAAATAGTGCGCATATTATACGAAAAAA GCAAAAAGAGTATACGACAAACAAATAAAAATTAAAAGCAACCACAACTA CTACTATAAAAATAACCAAGGAAAAGGCAAGGAAACTCGCAAAACGAGAG AGAGAGGAAAAGGGAAAAAACGCCATGGATTTATGACAACAACAAATGCA ACCCAGTAACAAATGATGTTGCAGCAACTACTACAATACACGAGTATACC AAGAACATCAACAACAACAACTGCAACGGCAACCAACAACAAATTGTATA CGATTTTTATAAACCAAACAAATGCTATGTAAATAATTATTATAACAAAC ACACAAGTAAAAAAAACATTCAAAACCAGATCTCCCGCTCTAGAAAACAA ACAACAAACGCGCGCGTAACAAAAACGACAACATCAACAATACAACAAGT ATACAAACGTAATAATAATACATAAAATCTAAACAAATGTGCCTGTGTTA AAAAAAAAGAAAGCAAAATCAAGAAGCAAAGCGTTCAAAAAGCAAAGGCT TCCCAATACATGAAAAAAGTGCAAAACATATATAAAAATCCAAGAAAATA ACATCCAAAACTGAAGAACTGGAAAAGCCAAGAGTAAATCTAAGGACTCC ACACGGGCAGCTACAGTAGAGCTTCCCTAAAACCGAAGCAGTTGCAGCGG CGGAGCGGGACGTCGGTCAGTGTGTTGCGCCCCCATTTGTTGTTCCTACT GTAAAAAGTGGCACAAATCGGGTTAGACGTCGCTCCCAGAGCATTAATGG CTCAGCCCAGGTATGACGATGGCCTACACGGCTACGGCATGGACTCCGGA GCCGCAGCAGCGGCCATGTACGATCCACACGCCGGTCACCGGCCGCCCGG ACTGCAGGGCCTCCCCTCGCACCACTCTCCGCACATGACGCACGCAGCGG CGGCGGCGGCCACAGTGGGCATGCACGGCTACCATTCGGGGGCCGGGGGT CATGGAACACCTAGTCATGTATCGCCGGTCGGTAATCACCTAATGGGCGC AATACCCGAAGTACACAAACGTGATAAGGATGCGATTTATGAACATCCGC TATTCCCGCTTTTGGCGCTGATCTTTGAGAAGTGCGAATTGGCCACATGT ACGCCAAGGGAGCCCGGTGTGCAAGGTGGCGATGTCTGTTCGTCGGAATC GTTCAACGAGGATATTGCAATGTTCAGTAAACAGATAAGATCACAGAAAC CCTATTATACCGCAGATCCCGAAGTCGACTCACTGATGGTGCAAGCAATA CAAGTACTTCGGTTTCACCTTTTAGAATTAGAAAAAGTACACGAGTTATG CGATAACTTCTGTCATCGGTATATATCGTGTTTAAAGGGTAAAATGCCAA TAGATTTAGTGATCGACGAACGGGACACCACCAAACCACCGGAGTTGGGA TCGGCGAACGGAGAAGGGCGCAGCAACGCCGACTCCACATCGCACACCGA TGGAGCTAGTACACCAGACGTTGTGAGTACCCCCTTCGCGGGAGCACATG GTCCTATATTGGCGAGCTACAATGCGGTGGTGCACCCATGTTCGTAGTAC GATAACGACCTTCTTGCAAAAACGAAGCGGGTGCTCACAATGCCCTGGGA TTAAATGAATCAATAATAATAATTGCGATCAATCAATACGAAATGCCAAT CGAGCGAATAACCGAGCGATAACCACAAAAAAAGAAAGAAAAGAAAGTAA AGAAATGAATGTTGCTGCACACTGTTCAAGCAAATTAAGTAAAATTAATT CACTTTGTGCGAAAACAAACATAATATTAATACTGATGAATTCAAATCCA AATCCGAACGCAGAAGAAGTTGTACGTCATTATGAACACACACAAAACAC CCACACACACATTGTAAATTAGTCAGAATCAGTAAATGAAAACAAAAAAA AAAAAACATACAAAAAGCGAAGAAAGCCCAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 6438547..6439652 | 1111..6 | 5470 | 99.6 | Minus |
chr3R | 27901430 | chr3R | 6410913..6411557 | 2279..1637 | 3110 | 99.5 | Minus |
chr3R | 27901430 | chr3R | 6430662..6430943 | 1392..1111 | 1410 | 100 | Minus |
chr3R | 27901430 | chr3R | 6428364..6428511 | 1540..1393 | 710 | 98.6 | Minus |
chr3R | 27901430 | chr3R | 6417026..6417080 | 1639..1585 | 275 | 100 | Minus |
chr3R | 27901430 | chr3R | 6419163..6419216 | 1585..1532 | 270 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 10612985..10614090 | 1111..6 | 5515 | 99.9 | Minus |
3R | 32079331 | 3R | 10585268..10585928 | 2295..1637 | 3175 | 99.4 | Minus |
3R | 32079331 | 3R | 10605088..10605369 | 1392..1111 | 1410 | 100 | Minus |
3R | 32079331 | 3R | 10602786..10602933 | 1540..1393 | 710 | 98.6 | Minus |
3R | 32079331 | 3R | 10591406..10591460 | 1639..1585 | 275 | 100 | Minus |
3R | 32079331 | 3R | 10593551..10593604 | 1585..1532 | 270 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 10353816..10354921 | 1111..6 | 5515 | 99.9 | Minus |
3R | 31820162 | 3R | 10326099..10326759 | 2295..1637 | 3195 | 99.3 | Minus |
3R | 31820162 | 3R | 10345919..10346200 | 1392..1111 | 1410 | 100 | Minus |
3R | 31820162 | 3R | 10343617..10343764 | 1540..1393 | 710 | 98.6 | Minus |
3R | 31820162 | 3R | 10332237..10332291 | 1639..1585 | 275 | 100 | Minus |
3R | 31820162 | 3R | 10334382..10334435 | 1585..1532 | 270 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 6410960..6411557 | 1637..2233 | 99 | <- | Minus |
chr3R | 6417029..6417079 | 1586..1636 | 100 | <- | Minus |
chr3R | 6419163..6419213 | 1535..1585 | 100 | <- | Minus |
chr3R | 6428370..6428511 | 1393..1534 | 99 | <- | Minus |
chr3R | 6430662..6430942 | 1112..1392 | 100 | <- | Minus |
chr3R | 6438547..6439065 | 593..1111 | 99 | == | Minus |
chr3R | 6439137..6439656 | 1..521 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
hth-RF | 1..801 | 1097..1897 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
hth-RF | 1..801 | 1097..1897 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
hth-RF | 1..801 | 1097..1897 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
hth-RF | 1..801 | 1097..1897 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
hth-RF | 1..801 | 1097..1897 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
hth-RF | 157..2437 | 1..2279 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
hth-RF | 157..2437 | 1..2279 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
hth-RF | 182..2462 | 1..2279 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
hth-RF | 157..2437 | 1..2279 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
hth-RF | 182..2462 | 1..2279 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 10585284..10585928 | 1637..2279 | 99 | <- | Minus |
3R | 10591409..10591459 | 1586..1636 | 100 | <- | Minus |
3R | 10593551..10593601 | 1535..1585 | 100 | <- | Minus |
3R | 10602792..10602933 | 1393..1534 | 99 | <- | Minus |
3R | 10605088..10605368 | 1112..1392 | 100 | <- | Minus |
3R | 10612985..10614094 | 1..1111 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 10585284..10585928 | 1637..2279 | 99 | <- | Minus |
3R | 10591409..10591459 | 1586..1636 | 100 | <- | Minus |
3R | 10593551..10593601 | 1535..1585 | 100 | <- | Minus |
3R | 10602792..10602933 | 1393..1534 | 99 | <- | Minus |
3R | 10605088..10605368 | 1112..1392 | 100 | <- | Minus |
3R | 10612985..10614094 | 1..1111 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 10585284..10585928 | 1637..2279 | 99 | <- | Minus |
3R | 10591409..10591459 | 1586..1636 | 100 | <- | Minus |
3R | 10593551..10593601 | 1535..1585 | 100 | <- | Minus |
3R | 10602792..10602933 | 1393..1534 | 99 | <- | Minus |
3R | 10605088..10605368 | 1112..1392 | 100 | <- | Minus |
3R | 10612985..10614094 | 1..1111 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 6411006..6411650 | 1637..2279 | 99 | <- | Minus |
arm_3R | 6417131..6417181 | 1586..1636 | 100 | <- | Minus |
arm_3R | 6419273..6419323 | 1535..1585 | 100 | <- | Minus |
arm_3R | 6428514..6428655 | 1393..1534 | 99 | <- | Minus |
arm_3R | 6430810..6431090 | 1112..1392 | 100 | <- | Minus |
arm_3R | 6438707..6439816 | 1..1111 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 10326115..10326759 | 1637..2279 | 99 | <- | Minus |
3R | 10332240..10332290 | 1586..1636 | 100 | <- | Minus |
3R | 10334382..10334432 | 1535..1585 | 100 | <- | Minus |
3R | 10343623..10343764 | 1393..1534 | 99 | <- | Minus |
3R | 10345919..10346199 | 1112..1392 | 100 | <- | Minus |
3R | 10353816..10354925 | 1..1111 | 99 | Minus |
Translation from 1096 to 1896
> RE37648.pep MAQPRYDDGLHGYGMDSGAAAAAMYDPHAGHRPPGLQGLPSHHSPHMTHA AAAAATVGMHGYHSGAGGHGTPSHVSPVGNHLMGAIPEVHKRDKDAIYEH PLFPLLALIFEKCELATCTPREPGVQGGDVCSSESFNEDIAMFSKQIRSQ KPYYTADPEVDSLMVQAIQVLRFHLLELEKVHELCDNFCHRYISCLKGKM PIDLVIDERDTTKPPELGSANGEGRSNADSTSHTDGASTPDVVSTPFAGA HGPILASYNAVVHPCS*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF17520-PA | 487 | GF17520-PA | 1..242 | 1..242 | 1295 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG17283-PA | 487 | GG17283-PA | 1..242 | 1..242 | 1295 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH19106-PA | 456 | GH19106-PA | 1..227 | 15..242 | 1180 | 97.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
hth-PI | 266 | CG17117-PI | 1..266 | 1..266 | 1442 | 100 | Plus |
hth-PF | 266 | CG17117-PF | 1..266 | 1..266 | 1442 | 100 | Plus |
hth-PE | 266 | CG17117-PE | 1..245 | 1..245 | 1319 | 99.6 | Plus |
hth-PA | 472 | CG17117-PA | 1..242 | 1..242 | 1312 | 100 | Plus |
hth-PC | 487 | CG17117-PC | 1..242 | 1..242 | 1312 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI23559-PA | 472 | GI23559-PA | 1..227 | 15..242 | 1186 | 98.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL23827-PA | 266 | GL23827-PA | 1..245 | 1..245 | 1285 | 98.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA14330-PE | 266 | GA14330-PE | 1..266 | 1..266 | 1410 | 100 | Plus |
Dpse\GA14330-PC | 487 | GA14330-PC | 1..242 | 1..242 | 1296 | 100 | Plus |
Dpse\GA14330-PF | 266 | GA14330-PF | 1..245 | 1..245 | 1295 | 99.6 | Plus |
Dpse\GA14330-PG | 471 | GA14330-PG | 1..242 | 1..242 | 1293 | 100 | Plus |
Dpse\GA14330-PB | 471 | GA14330-PB | 1..242 | 1..242 | 1293 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM26167-PA | 487 | GM26167-PA | 1..242 | 1..242 | 1295 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD20718-PA | 487 | GD20718-PA | 1..242 | 1..242 | 1295 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ23538-PA | 470 | GJ23538-PA | 1..241 | 1..242 | 1262 | 98.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK22581-PA | 486 | GK22581-PA | 1..241 | 1..242 | 1269 | 98.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE24684-PA | 487 | GE24684-PA | 1..242 | 1..242 | 1295 | 100 | Plus |
Translation from 1096 to 1896
> RE37648.hyp MAQPRYDDGLHGYGMDSGAAAAAMYDPHAGHRPPGLQGLPSHHSPHMTHA AAAAATVGMHGYHSGAGGHGTPSHVSPVGNHLMGAIPEVHKRDKDAIYEH PLFPLLALIFEKCELATCTPREPGVQGGDVCSSESFNEDIAMFSKQIRSQ KPYYTADPEVDSLMVQAIQVLRFHLLELEKVHELCDNFCHRYISCLKGKM PIDLVIDERDTTKPPELGSANGEGRSNADSTSHTDGASTPDVVSTPFAGA HGPILASYNAVVHPCS*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
hth-PI | 266 | CG17117-PI | 1..266 | 1..266 | 1442 | 100 | Plus |
hth-PF | 266 | CG17117-PF | 1..266 | 1..266 | 1442 | 100 | Plus |
hth-PE | 266 | CG17117-PE | 1..245 | 1..245 | 1319 | 99.6 | Plus |
hth-PA | 472 | CG17117-PA | 1..242 | 1..242 | 1312 | 100 | Plus |
hth-PC | 487 | CG17117-PC | 1..242 | 1..242 | 1312 | 100 | Plus |