Clone RE37682 Report

Search the DGRC for RE37682

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:376
Well:82
Vector:pFlc-1
Associated Gene/TranscriptCG7785-RA
Protein status:RE37682.pep: gold
Preliminary Size:852
Sequenced Size:1757

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7785 2002-01-01 Sim4 clustering to Release 2
CG7785 2002-03-28 Blastp of sequenced clone
CG7785 2003-01-01 Sim4 clustering to Release 3
CG7785 2008-04-29 Release 5.5 accounting
CG7785 2008-08-15 Release 5.9 accounting
CG7785 2008-12-18 5.12 accounting

Clone Sequence Records

RE37682.complete Sequence

1757 bp (1757 high quality bases) assembled on 2002-03-28

GenBank Submission: AY094871

> RE37682.complete
GGCTGTTTACAAAAACAAAACCAAGCGAAGAAGCGAAAATTATTGGCGAT
TTTTAAAAATCCAAATTAAAACTAGATTCGGAGTCGGAAAACCTTCATAG
ATTTGGGAATGTTCTGCTGCCTACGCACCTGTCTCAATGGTGGACACATA
AGGAAACCGACGGCAACCAGTCGCCTGCGGGAGCCCGATGTTCACCTGGA
TGCAGCGCATATGGGACCTGATGTAATCCTGCTGTCACACCAACTGCGCG
TAACGGGCACTGGCGGCGTCCTGGCCACGGCGCCTTTGGTCCAATCGAAG
TCCTACTTCGAGGTGAAGATCCAGCACGGCGGCAGCTGGTCGGTGGGCTT
GGCAACGCGTCAAACGGATCTCAGTCGCAAGAGCGGCGGCGGGGATCGAG
AGTCCTGGTGCCTGTGCTCCGATAATGCCACACGCCACAATGACCGCGAG
GAGTTCCGACCAGTGGTGCAGTCTGCTTGCACCACTCAGCCAGCGAGGAC
GAGCAATGGTATCCTGAACAATAGCGCTGCCAAAGCGGCCGGACTCATTG
CCATCGAGGATTTGCAGCAGGAAGATCTGCTGATGACCACTGGAGTGGCA
TCATCCGATGTGGATATCGGTGATTCGTTGATAGCATCGCCACAGCGAGA
TTTTCCCGATGAAGGAGACATTGTGGGCGTCGCCTTTGACCACGTGGAGC
TGAATTTCTACTTCAATGGAAAGAATCTGGAGGTTCCATTTCGAAATGTA
CGAGGAGCAGCACTATTTCCCGTCATTTATGTGGGCAATGGCGCCATTCT
GGACATTATCTTGGATAATTTTTCACACGGACCACCACCAGGATTCGAAC
GCATTCTATTGGAACAGTCACTTCTTTAGATAGTCCACACAAAAGCCTTG
AACAAATTAGCAGCATGAGAACAAAGCATTAACAAGAATAACTAAAAGAC
GGTGCATTTTAGGACTTTAGGAACGCATTTCATTCAAGTAATTTTTGTGG
CACTTTCTCTGCCAATGCGGACAACTACCTTTAAAAAAAATGAAATACAT
TATTGTCTAGTAACACTTTATTTATTTAATGTAAAAGTTAAGTTACAAGA
ATGACATTTTAAATATGCATTCTAGATTAAGTTTTAAAATGCGAACTTTC
AGTATAAAACAAATTATTTACACATTTTAGTTTTAGTTTTAGTTATTCCT
TTGCCATATTTCTTCTCTAGTCAAAAAGAAAAGTTCCCAAGCTGAATTCT
ATCTCACAACCAAAACAGCTATTAAATTATTTCAATTTACTTTGTACACA
TATCTTAATCGATTTTGTTGATTTTCACCACATATTTACTTATAGTCGTA
AAATGCACTGTTCTGTTCTCATTTAGACATCAGGTGTATAAACTTTGTAA
ACTCTCTAGTCCTTGCACTATCCAAACCGAAAGTATTTGTATAATTTTAT
TAATGTTTTGTAAATTATTTACGTAGCTTGACGTAGCATTTGTATTATAC
ACAGAGATACGCGTATCTGCATACAGATACAGATGAATTTTTTTGTAGGA
CTAGGTGGCCACAATTCAATTCTGACTTCATCGTACACATTCCAATTTAC
AACGGCAACGTACTCGAGCACGGAATTACCTAACTAAATATAAGAATATA
TCTGTATATCTAATAAATTGTATCTACACGTATCCAACGCTTCGAAAACT
GATTAATCCGCGCGCGGACAATAAATCAATGTTATGTACTTAAAAAAAAA
AAAAAAA

RE37682.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:18:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG7785-RA 1757 CG7785-RA 16..1757 2..1743 8710 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 19:09:22
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 13847135..13848095 781..1741 4805 100 Plus
chr3R 27901430 chr3R 13846511..13847078 214..781 2825 99.8 Plus
chr3R 27901430 chr3R 13846013..13846226 2..215 1070 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:53:17 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 19:09:20
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18022729..18023691 781..1743 4815 100 Plus
3R 32079331 3R 18022105..18022672 214..781 2840 100 Plus
3R 32079331 3R 18021607..18021820 2..215 1070 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:48:27
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 17763560..17764522 781..1743 4815 100 Plus
3R 31820162 3R 17762936..17763503 214..781 2840 100 Plus
3R 31820162 3R 17762438..17762651 2..215 1070 100 Plus
Blast to na_te.dros performed 2019-03-16 19:09:21
Subject Length Description Subject Range Query Range Score Percent Strand
412 7567 412 412 7567bp 1578..1820 1503..1273 139 56.7 Minus

RE37682.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 19:09:56 Download gff for RE37682.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 13846012..13846225 1..214 99 -> Plus
chr3R 13846512..13847078 215..781 99 -> Plus
chr3R 13847136..13848095 782..1741 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:13:22 Download gff for RE37682.complete
Subject Subject Range Query Range Percent Splice Strand
CG7785-RA 1..771 109..879 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:23:19 Download gff for RE37682.complete
Subject Subject Range Query Range Percent Splice Strand
CG7785-RA 1..771 109..879 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:24:02 Download gff for RE37682.complete
Subject Subject Range Query Range Percent Splice Strand
CG7785-RA 1..771 109..879 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:59:43 Download gff for RE37682.complete
Subject Subject Range Query Range Percent Splice Strand
CG7785-RA 1..771 109..879 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:02:04 Download gff for RE37682.complete
Subject Subject Range Query Range Percent Splice Strand
CG7785-RA 1..771 109..879 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:50:13 Download gff for RE37682.complete
Subject Subject Range Query Range Percent Splice Strand
CG7785-RA 2..1742 1..1741 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:23:19 Download gff for RE37682.complete
Subject Subject Range Query Range Percent Splice Strand
CG7785-RA 2..1742 1..1741 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:24:02 Download gff for RE37682.complete
Subject Subject Range Query Range Percent Splice Strand
CG7785-RA 7..1747 1..1741 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:59:43 Download gff for RE37682.complete
Subject Subject Range Query Range Percent Splice Strand
CG7785-RA 2..1742 1..1741 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:02:04 Download gff for RE37682.complete
Subject Subject Range Query Range Percent Splice Strand
CG7785-RA 7..1747 1..1741 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:09:56 Download gff for RE37682.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18021606..18021819 1..214 99 -> Plus
3R 18022106..18022672 215..781 100 -> Plus
3R 18022730..18023689 782..1741 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:09:56 Download gff for RE37682.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18021606..18021819 1..214 99 -> Plus
3R 18022106..18022672 215..781 100 -> Plus
3R 18022730..18023689 782..1741 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:09:56 Download gff for RE37682.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18021606..18021819 1..214 99 -> Plus
3R 18022106..18022672 215..781 100 -> Plus
3R 18022730..18023689 782..1741 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:24:02 Download gff for RE37682.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 13847328..13847541 1..214 99 -> Plus
arm_3R 13847828..13848394 215..781 100 -> Plus
arm_3R 13848452..13849411 782..1741 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:32:35 Download gff for RE37682.complete
Subject Subject Range Query Range Percent Splice Strand
3R 17762437..17762650 1..214 99 -> Plus
3R 17762937..17763503 215..781 100 -> Plus
3R 17763561..17764520 782..1741 100   Plus

RE37682.pep Sequence

Translation from 108 to 878

> RE37682.pep
MFCCLRTCLNGGHIRKPTATSRLREPDVHLDAAHMGPDVILLSHQLRVTG
TGGVLATAPLVQSKSYFEVKIQHGGSWSVGLATRQTDLSRKSGGGDRESW
CLCSDNATRHNDREEFRPVVQSACTTQPARTSNGILNNSAAKAAGLIAIE
DLQQEDLLMTTGVASSDVDIGDSLIASPQRDFPDEGDIVGVAFDHVELNF
YFNGKNLEVPFRNVRGAALFPVIYVGNGAILDIILDNFSHGPPPGFERIL
LEQSLL*

RE37682.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 05:06:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16751-PA 256 GF16751-PA 1..256 1..256 1220 88.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 05:06:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22604-PA 256 GG22604-PA 1..256 1..256 1333 97.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 05:06:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15045-PA 266 GH15045-PA 1..266 1..256 1099 82 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:23:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG7785-PA 256 CG7785-PA 1..256 1..256 1339 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 05:06:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23710-PA 263 GI23710-PA 1..263 1..256 1087 83 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 05:06:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12585-PA 259 GL12585-PA 1..259 1..256 1186 87.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 05:06:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20585-PA 259 GA20585-PA 1..259 1..256 1182 87.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 05:06:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15272-PA 245 GM15272-PA 1..245 1..256 1248 93 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 05:06:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19195-PA 256 GD19195-PA 1..256 1..256 1345 98.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 05:06:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23269-PA 265 GJ23269-PA 1..265 1..256 1073 80.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 05:06:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11237-PA 257 GK11237-PA 1..257 1..256 1060 79.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 05:06:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25506-PA 256 GE25506-PA 1..256 1..256 1321 96.5 Plus

RE37682.hyp Sequence

Translation from 108 to 878

> RE37682.hyp
MFCCLRTCLNGGHIRKPTATSRLREPDVHLDAAHMGPDVILLSHQLRVTG
TGGVLATAPLVQSKSYFEVKIQHGGSWSVGLATRQTDLSRKSGGGDRESW
CLCSDNATRHNDREEFRPVVQSACTTQPARTSNGILNNSAAKAAGLIAIE
DLQQEDLLMTTGVASSDVDIGDSLIASPQRDFPDEGDIVGVAFDHVELNF
YFNGKNLEVPFRNVRGAALFPVIYVGNGAILDIILDNFSHGPPPGFERIL
LEQSLL*

RE37682.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:39:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG7785-PA 256 CG7785-PA 1..256 1..256 1339 100 Plus