Clone RE37738 Report

Search the DGRC for RE37738

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:377
Well:38
Vector:pFlc-1
Associated Gene/TranscriptCG9673-RA
Protein status:RE37738.pep: gold
Preliminary Size:786
Sequenced Size:903

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9673 2002-01-01 Sim4 clustering to Release 2
CG9673 2002-04-21 Blastp of sequenced clone
CG9673 2003-01-01 Sim4 clustering to Release 3
CG9673 2008-04-29 Release 5.5 accounting
CG9673 2008-08-15 Release 5.9 accounting
CG9673 2008-12-18 5.12 accounting

Clone Sequence Records

RE37738.complete Sequence

903 bp (903 high quality bases) assembled on 2002-04-21

GenBank Submission: AY113462

> RE37738.complete
GGTTGCCAATCCATCGCCATGGCTGATCCACGCATTACTCTCGGCCTCGG
CCTGCTAATCTTTGGCCTGATCCTCTCCGCGGAAGCCTCGCCACAAGGTC
GCATTCTTGGCGGCGAGGACGTTGCCCAGGGCGAGTACCCCTGGTCCGCA
TCCGTGAGATACAACAAGGCCCACGTCTGCTCCGGCGCCATCATCTCAAC
AAACCACATCCTGACCGCCGCCCACTGTGTGTCCAGCGTGGGCATCACCC
CAGTGGATGCCAGCACCTTGGCTGTTCGCCTGGGCACCATTAACCAGTAC
GCCGGCGGCAGCATTGTGAATGTAAAGAGCGTGATCATCCATCCATCGTA
CGGAAACTTCCTGCACGACATCGCCATACTGGAGCTGGACGAGACCCTGG
TCTTTAGCGATCGCATCCAAGACATCGCACTGCCCCCCACAACTGATGAG
GAGACGGAAGATGTGGACGCTGAGCTGCCCAACGGAACTCCGGTCTATGT
GGCTGGATGGGGTGAACTTTCGGATGGTACTGCATCCTATAAACAGCAGA
AGGCCAACTACAATACGCTGAGCCGATCCCTGTGCGAATGGGAAGCCGGA
TACGGCTACGAATCCGTCGTCTGCCTCTCGAGAGCCGAAGGCGAGGGCAT
CTGTCGTGGGGATGCCGGTGCGGCTGTCATCGATGACGACAAGGTGCTTC
GCGGTTTGACCAGCTTCAACTTCGGACCCTGCGGCAGCAAGTATCCGGAT
GTGGCCACCCGTGTCTCCTACTACCTAACCTGGATCGAGGCCAATACCCA
GTAAAACTTTTGGTTCGCCATCCAAGGACTACCCTTTATTTTTTTATACA
TTTTTTTCATGTGCATAAAGTGTGTTACTCCCTCTACAAAAAAAAAAAAA
AAA

RE37738.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:13:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG9673-RA 1030 CG9673-RA 38..932 2..896 4460 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 02:00:27
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 16592526..16593161 887..252 3165 99.8 Minus
chrX 22417052 chrX 16593283..16593532 251..2 1250 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:53:20 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 02:00:25
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16702864..16703508 896..252 3210 99.8 Minus
X 23542271 X 16703630..16703879 251..2 1250 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:44:07
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 16710962..16711606 896..252 3210 99.8 Minus
X 23527363 X 16711728..16711977 251..2 1250 100 Minus
Blast to na_te.dros performed on 2019-03-16 02:00:26 has no hits.

RE37738.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 02:01:41 Download gff for RE37738.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 16593283..16593532 1..251 99   Minus
chrX 16592526..16593161 252..887 99 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:13:25 Download gff for RE37738.complete
Subject Subject Range Query Range Percent Splice Strand
CG9673-RA 1..786 19..804 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:59:42 Download gff for RE37738.complete
Subject Subject Range Query Range Percent Splice Strand
CG9673-RA 1..786 19..804 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:13:18 Download gff for RE37738.complete
Subject Subject Range Query Range Percent Splice Strand
CG9673-RA 1..786 19..804 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:53:01 Download gff for RE37738.complete
Subject Subject Range Query Range Percent Splice Strand
CG9673-RA 1..786 19..804 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 04:54:34 Download gff for RE37738.complete
Subject Subject Range Query Range Percent Splice Strand
CG9673-RA 1..786 19..804 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:40:31 Download gff for RE37738.complete
Subject Subject Range Query Range Percent Splice Strand
CG9673-RA 1..886 2..887 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:59:42 Download gff for RE37738.complete
Subject Subject Range Query Range Percent Splice Strand
CG9673-RA 1..886 2..887 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:13:18 Download gff for RE37738.complete
Subject Subject Range Query Range Percent Splice Strand
CG9673-RA 5..891 1..887 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:53:03 Download gff for RE37738.complete
Subject Subject Range Query Range Percent Splice Strand
CG9673-RA 1..886 2..887 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:54:34 Download gff for RE37738.complete
Subject Subject Range Query Range Percent Splice Strand
CG9673-RA 5..891 1..887 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:01:41 Download gff for RE37738.complete
Subject Subject Range Query Range Percent Splice Strand
X 16702873..16703508 252..887 99 <- Minus
X 16703630..16703879 1..251 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:01:41 Download gff for RE37738.complete
Subject Subject Range Query Range Percent Splice Strand
X 16702873..16703508 252..887 99 <- Minus
X 16703630..16703879 1..251 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:01:41 Download gff for RE37738.complete
Subject Subject Range Query Range Percent Splice Strand
X 16702873..16703508 252..887 99 <- Minus
X 16703630..16703879 1..251 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:13:18 Download gff for RE37738.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 16596906..16597541 252..887 99 <- Minus
arm_X 16597663..16597912 1..251 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:25:08 Download gff for RE37738.complete
Subject Subject Range Query Range Percent Splice Strand
X 16710971..16711606 252..887 99 <- Minus
X 16711728..16711977 1..251 99   Minus

RE37738.hyp Sequence

Translation from 3 to 803

> RE37738.hyp
CQSIAMADPRITLGLGLLIFGLILSAEASPQGRILGGEDVAQGEYPWSAS
VRYNKAHVCSGAIISTNHILTAAHCVSSVGITPVDASTLAVRLGTINQYA
GGSIVNVKSVIIHPSYGNFLHDIAILELDETLVFSDRIQDIALPPTTDEE
TEDVDAELPNGTPVYVAGWGELSDGTASYKQQKANYNTLSRSLCEWEAGY
GYESVVCLSRAEGEGICRGDAGAAVIDDDKVLRGLTSFNFGPCGSKYPDV
ATRVSYYLTWIEANTQ*

RE37738.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:05:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG9673-PB 261 CG9673-PB 1..261 6..266 1362 100 Plus
CG9673-PA 261 CG9673-PA 1..261 6..266 1362 100 Plus
spheroide-PA 249 CG9675-PA 1..245 6..262 464 42.8 Plus
CG1304-PA 260 CG1304-PA 8..257 11..265 420 35.2 Plus
Ser6-PA 259 CG2071-PA 5..257 10..265 411 34.1 Plus

RE37738.pep Sequence

Translation from 18 to 803

> RE37738.pep
MADPRITLGLGLLIFGLILSAEASPQGRILGGEDVAQGEYPWSASVRYNK
AHVCSGAIISTNHILTAAHCVSSVGITPVDASTLAVRLGTINQYAGGSIV
NVKSVIIHPSYGNFLHDIAILELDETLVFSDRIQDIALPPTTDEETEDVD
AELPNGTPVYVAGWGELSDGTASYKQQKANYNTLSRSLCEWEAGYGYESV
VCLSRAEGEGICRGDAGAAVIDDDKVLRGLTSFNFGPCGSKYPDVATRVS
YYLTWIEANTQ*

RE37738.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 01:37:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22292-PA 271 GF22292-PA 1..268 1..260 900 65.9 Plus
Dana\GF22294-PA 248 GF22294-PA 6..244 8..257 454 40.9 Plus
Dana\GF21864-PA 264 GF21864-PA 25..262 18..260 401 37.9 Plus
Dana\GF22295-PA 255 GF22295-PA 31..254 28..261 310 33.9 Plus
Dana\GF21865-PA 229 GF21865-PA 13..225 12..261 307 31.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 01:37:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18230-PA 260 GG18230-PA 1..260 1..261 1141 87 Plus
Dere\GG18231-PA 249 GG18231-PA 23..245 26..257 437 42.1 Plus
Dere\GG17565-PA 260 GG17565-PA 21..257 18..260 405 35.1 Plus
Dere\GG17566-PA 259 GG17566-PA 1..257 1..260 399 33.6 Plus
Dere\GG18232-PA 251 GG18232-PA 3..245 4..256 313 32.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 01:37:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12385-PA 186 GH12385-PA 6..186 79..261 533 58.7 Plus
Dgri\GH12386-PA 254 GH12386-PA 22..253 22..261 401 38.7 Plus
Dgri\GH24521-PA 256 GH24521-PA 12..254 12..260 394 35.7 Plus
Dgri\GH12394-PA 251 GH12394-PA 2..250 4..259 367 35.4 Plus
Dgri\GH22924-PA 256 GH22924-PA 15..252 15..259 294 32.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:46:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG9673-PB 261 CG9673-PB 1..261 1..261 1362 100 Plus
CG9673-PA 261 CG9673-PA 1..261 1..261 1362 100 Plus
sphe-PA 249 CG9675-PA 1..245 1..257 464 42.8 Plus
CG1304-PA 260 CG1304-PA 8..257 6..260 420 35.2 Plus
Ser6-PA 259 CG2071-PA 5..257 5..260 411 34.1 Plus
CG9676-PA 251 CG9676-PA 9..245 10..256 319 33.7 Plus
gammaTry-PA 253 CG30028-PA 29..252 27..259 306 33.6 Plus
deltaTry-PA 253 CG12351-PA 29..252 27..259 306 33.6 Plus
CG30031-PA 253 CG30031-PA 29..252 27..259 306 33.6 Plus
CG4653-PA 254 CG4653-PA 34..252 38..259 304 35.1 Plus
CG30025-PA 253 CG30025-PA 29..252 27..259 303 33.6 Plus
alphaTry-PA 256 CG18444-PA 29..249 27..256 302 33.9 Plus
betaTry-PB 253 CG18211-PB 29..252 27..259 299 33.1 Plus
betaTry-PA 253 CG18211-PA 29..252 27..259 299 33.1 Plus
CG32523-PA 262 CG32523-PA 29..256 21..256 289 33.6 Plus
CG9672-PA 253 CG9672-PA 5..252 6..261 285 30.4 Plus
CG31266-PB 282 CG31266-PB 43..272 20..256 285 33.3 Plus
MP1-PA 390 CG1102-PA 127..389 28..261 284 31.4 Plus
MP1-PC 399 CG1102-PC 136..398 28..261 284 31.4 Plus
MP1-PE 400 CG1102-PE 137..399 28..261 284 31.4 Plus
iotaTry-PA 252 CG7754-PA 11..245 10..256 274 31.1 Plus
CG17571-PB 258 CG17571-PB 27..255 25..260 270 31.7 Plus
CG17571-PA 258 CG17571-PA 27..255 25..260 270 31.7 Plus
lambdaTry-PA 272 CG12350-PA 34..256 27..256 263 33.2 Plus
epsilonTry-PA 256 CG18681-PA 29..254 27..261 258 27.3 Plus
CG13430-PB 267 CG13430-PB 23..259 20..256 256 30.4 Plus
CG13430-PA 267 CG13430-PA 23..259 20..256 256 30.4 Plus
CG11192-PB 279 CG11192-PB 10..260 14..257 256 27.7 Plus
Send2-PA 239 CG18125-PA 23..225 25..256 255 30.6 Plus
Ser8-PA 260 CG4812-PA 9..253 8..256 255 28 Plus
l(2)k05911-PC 639 CG31728-PC 397..637 26..259 254 30.5 Plus
CG5909-PA 381 CG5909-PA 112..381 11..261 253 27 Plus
ea-PA 392 CG4920-PA 127..387 28..257 252 30.5 Plus
CG17475-PB 288 CG17475-PB 47..269 26..258 249 32 Plus
CG17475-PA 288 CG17475-PA 47..269 26..258 249 32 Plus
CG3916-PA 267 CG3916-PA 20..257 17..256 248 29.6 Plus
CG5246-PA 272 CG5246-PA 38..262 25..257 248 31.5 Plus
CG16998-PA 258 CG16998-PA 9..242 12..256 247 31.9 Plus
CG10472-PA 290 CG10472-PA 40..280 22..257 247 32.1 Plus
CG3355-PA 314 CG3355-PA 75..306 28..260 247 29.3 Plus
Ser12-PA 245 CG17240-PA 14..238 18..256 243 28.4 Plus
CG31954-PA 277 CG31954-PA 49..275 27..260 243 29.5 Plus
Try29F-PD 267 CG9564-PD 21..263 11..258 242 29.8 Plus
Try29F-PC 267 CG9564-PC 21..263 11..258 242 29.8 Plus
ea-PB 261 CG4920-PB 7..256 39..257 240 30.2 Plus
CG17477-PA 267 CG17477-PA 10..247 12..256 240 28.1 Plus
CG4053-PB 265 CG4053-PB 34..253 28..256 238 29.4 Plus
CG31265-PA 266 CG31265-PA 31..256 23..258 238 30.5 Plus
CG4613-PC 374 CG4613-PC 136..367 28..261 238 29 Plus
CG4271-PA 242 CG4271-PA 9..236 17..261 236 32.7 Plus
CG10405-PB 268 CG10405-PB 11..255 12..251 236 26.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 01:37:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15879-PA 258 GI15879-PA 15..256 13..259 749 57.9 Plus
Dmoj\GI15880-PA 255 GI15880-PA 15..250 14..257 461 39.8 Plus
Dmoj\GI15881-PA 254 GI15881-PA 20..248 22..256 386 34.2 Plus
Dmoj\GI14724-PA 252 GI14724-PA 22..251 23..259 371 35.3 Plus
Dmoj\GI15500-PA 257 GI15500-PA 25..254 25..260 322 31.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 01:37:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26772-PA 261 GL26772-PA 20..261 21..261 905 68.6 Plus
Dper\GL26774-PA 255 GL26774-PA 19..254 14..261 349 36.5 Plus
Dper\GL26773-PA 228 GL26773-PA 22..224 22..257 336 32.1 Plus
Dper\GL17339-PA 256 GL17339-PA 1..249 12..256 278 33.1 Plus
Dper\GL16818-PA 287 GL16818-PA 6..271 5..260 278 28.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 01:37:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21955-PA 261 GA21955-PA 20..261 21..261 909 69 Plus
Dpse\GA23050-PA 252 GA23050-PA 7..248 8..257 413 34.9 Plus
Dpse\GA21958-PA 255 GA21958-PA 19..254 14..261 355 36.9 Plus
Dpse\GA11993-PA 220 GA11993-PA 1..218 1..260 292 29.6 Plus
Dpse\GA21954-PA 253 GA21954-PA 2..253 5..261 287 28 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 01:37:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13373-PA 261 GM13373-PA 1..261 1..261 1208 91.6 Plus
Dsec\GM13374-PA 249 GM13374-PA 1..245 1..257 429 40.5 Plus
Dsec\GM22650-PA 259 GM22650-PA 10..257 10..260 379 34.4 Plus
Dsec\GM22649-PA 260 GM22649-PA 21..257 18..260 374 35.9 Plus
Dsec\GM13375-PA 251 GM13375-PA 9..245 10..256 304 33.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 01:37:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15728-PA 261 GD15728-PA 1..261 1..261 1241 95 Plus
Dsim\GD15729-PA 249 GD15729-PA 1..245 1..257 417 41.3 Plus
Dsim\GD15519-PA 259 GD15519-PA 10..257 10..260 392 35.1 Plus
Dsim\GD15518-PA 260 GD15518-PA 21..257 18..260 374 35.9 Plus
Dsim\GD15730-PA 251 GD15730-PA 3..245 4..256 312 33.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 01:37:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18705-PA 262 GJ18705-PA 24..262 25..261 832 62.3 Plus
Dvir\GJ18707-PA 252 GJ18707-PA 20..251 22..261 446 41.2 Plus
Dvir\GJ18708-PA 253 GJ18708-PA 12..247 15..256 411 36.8 Plus
Dvir\GJ18895-PA 256 GJ18895-PA 22..253 23..260 407 37.6 Plus
Dvir\GJ19438-PA 252 GJ19438-PA 3..251 4..259 370 34.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 01:37:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25504-PA 260 GK25504-PA 22..258 25..258 782 60.8 Plus
Dwil\GK25505-PA 254 GK25505-PA 28..249 27..257 418 39.7 Plus
Dwil\GK25506-PA 256 GK25506-PA 26..250 26..256 392 36.1 Plus
Dwil\GK20044-PA 258 GK20044-PA 6..256 12..260 336 33 Plus
Dwil\GK25410-PA 246 GK25410-PA 26..245 36..260 318 32.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 01:37:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15649-PA 265 GE15649-PA 1..265 1..261 1223 89.4 Plus
Dyak\GE15650-PA 249 GE15650-PA 11..245 14..257 438 39.8 Plus
Dyak\GE15326-PA 259 GE15326-PA 1..257 1..260 412 34 Plus
Dyak\GE15325-PA 260 GE15325-PA 21..257 18..260 401 35.1 Plus
Dyak\GE15651-PA 253 GE15651-PA 29..250 28..259 301 33.3 Plus