BDGP Sequence Production Resources |
Search the DGRC for RE37840
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 378 |
Well: | 40 |
Vector: | pFlc-1 |
Associated Gene/Transcript | gammaCOP-RB |
Protein status: | RE37840.pep: gold |
Preliminary Size: | 3052 |
Sequenced Size: | 3293 |
Gene | Date | Evidence |
---|---|---|
CG1528 | 2002-10-19 | Blastp of sequenced clone |
CG1528 | 2003-01-01 | Sim4 clustering to Release 3 |
gammaCop | 2008-04-29 | Release 5.5 accounting |
gammaCop | 2008-08-15 | Release 5.9 accounting |
gammaCop | 2008-12-18 | 5.12 accounting |
3293 bp (3293 high quality bases) assembled on 2002-10-19
GenBank Submission: BT001628
> RE37840.complete GGGTGAACCAACTGGGCACCGCTGAGTGACGTGTAAGCGCAGCCAGAAAA CCATTTCAATTGTTTTACCCACAATTTAACCGAAAGTTGCAAGACAATGG GTTGGTTCCGCCGCGAGAAAGATGATGAGGAGGACGGTAAGTAGCAAGCT AGCACCTGGAGCCAAGTTGTCCGCCGACCAGCGAAGCCAATCGAAGACAA CCCAGTTGCTTGAAGGTGCTCCGCTGGCACAGACACACACTCACACACCC ACTAACCCGACAAAGTCGAGAAAAATCGAGGTTTCCCTAAATTGACTGAG AACATGAACTATTTTTCCCTTACCTCGCACAAAAAACATCGCGGCCATCC GTCAGCAGGACCGAGCAATGCGTACCAGAACCTGGAAAAAACCTCGGTGC TTCAGGAGACGCGCACCTTCAATGAGACGCCGGTGAACCCAAGGAAGTGC ATCCACATCCTGACCAAAATCCTGTACCTGATTAATCAGGGTGAGCAGCT TGTGGCCCGCGAGGCCACCGACTGCTTTTTTGCGATGACGAAGCTCTTCC AATCTAAGGACGTGGTGCTGCGTCGTATGGTATACCTGGGCATCAAGGAG CTGAGCTCCATTGCCGAGGACGTCATCATCGTGACTAGCTCGCTAACGAA GGATATGACCGGCAAGGAAGACCTGTACAGGGCCGCCGCAATCCGGGCCT TGTGCAGCATCACGGATAACACCATGTTGCAGGCCGTGGAGCGCTACATG AAGCAGTGCATTGTTGACAAAAACGCGGCAGTTTCTTGTGCTGCATTGGT CAGTTCTTTGAGATTGGCCAACACTGCCGGCGACGTGGTCAAGAGGTGGG CAAACGAGGCCCAGGAGGCTTTGAACAGCGACAACATTATGGTACAGTAC CACGCGTTGGGTCTGCTCTACCATATCCGCAAGTCGGATCGGCTGGCTGT CTCCAAGTTGGTCAACAAGCTGACCAGAGGATCTCTAAAGAGTCCCTATG CCGTTTGCATGCTGATACGCATTGCCTGTAAGCTGATCGAGGAGGAGGAC ATTCCCTCTGAGGAGCTTTCCGATTCACCCTTGTTTACGTTCATCGAGTC CTGTCTGCGCCACAAGAGCGAGATGGTCATCTACGAGGCGGCCCACGCCA TTGTCAACCTCAAGAACACCAATCCGCGAATGCTATCGCCGGCGTTCTCC ATCCTCCAGCTTTTCTGCAGCTCGCCGAAGGCAACGTTGCGCTTTGCGGC TGTGCGCACGCTTAACAAGGTGGCGATGACGCACCCGGCTGCGGTGACCA CCTGTAACTTGGACCTGGAAGGTCTCATCACGGACTCCAATCGATCGGTG GCCACTCTGGCCATCACTACGCTGCTAAAGACCGGCGCTGAATCCTCGGT AGAGCGTCTGATGAAGCAGATCTCCACGTTTGTGGCGGAGATTTCCGATG AATTCAAGGTGGTGGTCGTGCAGGCCATTTGCGCTCTGTGCACCAAATAT CCGCGCAAGCACACAGTGCTGATGAACTTCCTCAGCGGTATGCTGCGCGA GGAGGGTGGCCTTGAATACAAGACCTCCATAGTTGACACCATCATCACGA TCATCGAGGAGAATGCGGACGCCAAGGAGTCCGGTTTGTCGCATCTGTGC GAGTTCATCGAGGATTGTGAACACGTTTCACTGGCGGTGAGGATTCTTCA CCTGCTGGGCAAGGAGGGACCCTTTGCGGCCACACCCTCCAAGTATATAC GCTTTATCTACAACCGCGTCATCTTGGAGAGCCCTATTGTGCGAGCAGCC GCGGTCACGGCCATGGCCCAGTTTGGAGCATCTTGTCCAGCCTTGTTAAG CAATATCCTCGTTCTGCTGGGTCGTTGCCAGATGGACCCGGACGACGAGG TGCGTGACCGTGCCACCTACTACCTTAGCATTCTTAACTCGGAAAGGCCA GAGCTGTACAAGAACTACATCATCGAAAGGGAGAACTGTTCTCTGGCTCT GCTGGAGAAGTCGCTGGTCGAACATCTGAATGGTGACGTGGACACACGCT TCGATATTTCCATTGTGCCCAAGGCGGCCATAGTTAAGCCAGTTATTGCC AACGACGTAATGCTAGTTACCAGCAGTGCTCCACGGCCGCCGAAGATCAC GCGCGAGGAGGAGAGTGCTGCACGTCTGGCACAGCTGCCGGGCATCCAGG TGCTGGGCCCCATCCATCGCAGCACAGCTCCCATCCAGCTTACTGAAAGT GAAACGGAGTACACGGTGCAGTGCATCAAACACATATTCGGCCAGCACGT GGTCTTCCAGTTCGATTGCTTGAATACGCTGTCCGACCAAATCCTTGAAA ATGTGCGGGTGGAACTCACGCTGCCGGAAGGATTCACAACCAGGGCGGTC ATTCCATGTCCCAAGCTACCCTACAACGATCTGCAAACCACTTTTGTCAT CGTAGAATTCCCGCCCGACGCCGCCAATTCCATAGCCACCTTTGGTGCCA CTTTACGATTTGTGGTCAAGGACTGCGACCCCAACACCGGCGAGCCGGAG TCAGAGGAGGGCTATGACGACGAGTACATGCTAGAGGATTTGGAGCTGAC GGTTGCCGATCAGATACAGAAAACCAGAAAGAACAATTTCCAAGTGTCCT GGGATGCGGCTGACAGCGAAGAATGGCTACAAGCCGAGGATACCTTTGTG CTGTCGGCAGTGACCACCTTGCAGGATGCCGTCAACACTATAGTCAAGAT CCTGGGCTTGGGCGCTGCAAACCTCTCTGAGAATGTGCCCGAGGGTACGC ACCTGCATACGTTGCTCTGTTCAGGAACCTTCAGAGGCGGCGCCGAGATT CTTGTGCGGGCCAAGCTGGCGCTTTCAGAAGGCGTCACGCTCAATCTGAC GGTGCGCAGCACGGACCAGGACGTGGCGGAGCTGATAACGGCGGCCATTG GATAAGACAGCGAGCCATGCAGGAACCTCCTTTGGTTCCTGCGTGCTGTG AACGTAATCTGAACTCCCTACGAAACTACGAAACAGAAAGTTACGCCTAA TCAAAATATAATTTGTACCTTTAAGCGACTGTCTCTGTAATAATCTTAGA GCCCTGTCCACAATCCGGCATGTGCAACATTGAGTATTGCTACTGGCCAT TTCCGAAAAGTTTGTGTGGCGATGCAGCCTTCGGTGTGCATCGCATATGT TTATTATCCCCATTTAGCCTGTGCATTTAGCTTAAGTATGGAAACAAAAT ATTAAAAATACATGTATATGCAATGCTAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
gammaCop-RB | 3386 | gammaCop-RB | 50..3322 | 4..3276 | 16335 | 99.9 | Plus |
gammaCop-RA | 3294 | gammaCop-RA | 289..3210 | 355..3276 | 14595 | 99.9 | Plus |
gammaCop-RC | 3314 | gammaCop-RC | 289..3207 | 358..3276 | 14580 | 99.9 | Plus |
gammaCop-RC | 3314 | gammaCop-RC | 157..290 | 4..137 | 655 | 99.2 | Plus |
gammaCop-RA | 3294 | gammaCop-RA | 157..289 | 4..136 | 650 | 99.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 27395620..27397091 | 1014..2485 | 7315 | 99.8 | Plus |
chr3R | 27901430 | chr3R | 27394513..27395523 | 4..1014 | 5040 | 99.9 | Plus |
chr3R | 27901430 | chr3R | 27397620..27398074 | 2822..3276 | 2275 | 100 | Plus |
chr3R | 27901430 | chr3R | 27397166..27397353 | 2484..2671 | 940 | 100 | Plus |
chr3R | 27901430 | chr3R | 27397410..27397565 | 2670..2825 | 780 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 31573253..31574724 | 1014..2485 | 7345 | 99.9 | Plus |
3R | 32079331 | 3R | 31572146..31573156 | 4..1014 | 5040 | 99.9 | Plus |
3R | 32079331 | 3R | 31575253..31575707 | 2822..3276 | 2275 | 100 | Plus |
3R | 32079331 | 3R | 31574799..31574986 | 2484..2671 | 940 | 100 | Plus |
3R | 32079331 | 3R | 31575043..31575198 | 2670..2825 | 780 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 31314084..31315555 | 1014..2485 | 7345 | 99.9 | Plus |
3R | 31820162 | 3R | 31312977..31313987 | 4..1014 | 5040 | 99.9 | Plus |
3R | 31820162 | 3R | 31316084..31316538 | 2822..3276 | 2275 | 100 | Plus |
3R | 31820162 | 3R | 31315630..31315817 | 2484..2671 | 940 | 100 | Plus |
3R | 31820162 | 3R | 31315874..31316029 | 2670..2825 | 780 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 27395621..27397091 | 1015..2485 | 99 | -> | Plus |
chr3R | 27397168..27397353 | 2486..2671 | 100 | -> | Plus |
chr3R | 27394510..27395523 | 1..1014 | 99 | -> | Plus |
chr3R | 27397412..27397564 | 2672..2824 | 100 | -> | Plus |
chr3R | 27397623..27398074 | 2825..3277 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
gammaCop-RB | 1..2652 | 304..2955 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
gammaCop-RB | 1..2652 | 304..2955 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
gammaCop-RD | 40..2694 | 358..3012 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
gammaCop-RB | 1..2652 | 304..2955 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
gammaCOP-RD | 40..2694 | 358..3012 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
gammaCop-RB | 2..3276 | 3..3277 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
gammaCop-RB | 2..3276 | 3..3276 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
gammaCop-RB | 2..3276 | 3..3276 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
gammaCop-RB | 2..3276 | 3..3277 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
gammaCOP-RB | 2..3276 | 3..3276 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 31572143..31573156 | 1..1014 | 99 | -> | Plus |
3R | 31573254..31574724 | 1015..2485 | 99 | -> | Plus |
3R | 31574801..31574986 | 2486..2671 | 100 | -> | Plus |
3R | 31575045..31575197 | 2672..2824 | 100 | -> | Plus |
3R | 31575256..31575707 | 2825..3277 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 31572143..31573156 | 1..1014 | 99 | -> | Plus |
3R | 31573254..31574724 | 1015..2485 | 99 | -> | Plus |
3R | 31574801..31574986 | 2486..2671 | 100 | -> | Plus |
3R | 31575045..31575197 | 2672..2824 | 100 | -> | Plus |
3R | 31575256..31575707 | 2825..3277 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 31572143..31573156 | 1..1014 | 99 | -> | Plus |
3R | 31573254..31574724 | 1015..2485 | 99 | -> | Plus |
3R | 31574801..31574986 | 2486..2671 | 100 | -> | Plus |
3R | 31575045..31575197 | 2672..2824 | 100 | -> | Plus |
3R | 31575256..31575707 | 2825..3277 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 27397865..27398878 | 1..1014 | 99 | -> | Plus |
arm_3R | 27398976..27400446 | 1015..2485 | 99 | -> | Plus |
arm_3R | 27400523..27400708 | 2486..2671 | 100 | -> | Plus |
arm_3R | 27400767..27400919 | 2672..2824 | 100 | -> | Plus |
arm_3R | 27400978..27401429 | 2825..3277 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 31312974..31313987 | 1..1014 | 99 | -> | Plus |
3R | 31314085..31315555 | 1015..2485 | 99 | -> | Plus |
3R | 31315632..31315817 | 2486..2671 | 100 | -> | Plus |
3R | 31315876..31316028 | 2672..2824 | 100 | -> | Plus |
3R | 31316087..31316538 | 2825..3277 | 99 | Plus |
Translation from 303 to 2954
> RE37840.pep MNYFSLTSHKKHRGHPSAGPSNAYQNLEKTSVLQETRTFNETPVNPRKCI HILTKILYLINQGEQLVAREATDCFFAMTKLFQSKDVVLRRMVYLGIKEL SSIAEDVIIVTSSLTKDMTGKEDLYRAAAIRALCSITDNTMLQAVERYMK QCIVDKNAAVSCAALVSSLRLANTAGDVVKRWANEAQEALNSDNIMVQYH ALGLLYHIRKSDRLAVSKLVNKLTRGSLKSPYAVCMLIRIACKLIEEEDI PSEELSDSPLFTFIESCLRHKSEMVIYEAAHAIVNLKNTNPRMLSPAFSI LQLFCSSPKATLRFAAVRTLNKVAMTHPAAVTTCNLDLEGLITDSNRSVA TLAITTLLKTGAESSVERLMKQISTFVAEISDEFKVVVVQAICALCTKYP RKHTVLMNFLSGMLREEGGLEYKTSIVDTIITIIEENADAKESGLSHLCE FIEDCEHVSLAVRILHLLGKEGPFAATPSKYIRFIYNRVILESPIVRAAA VTAMAQFGASCPALLSNILVLLGRCQMDPDDEVRDRATYYLSILNSERPE LYKNYIIERENCSLALLEKSLVEHLNGDVDTRFDISIVPKAAIVKPVIAN DVMLVTSSAPRPPKITREEESAARLAQLPGIQVLGPIHRSTAPIQLTESE TEYTVQCIKHIFGQHVVFQFDCLNTLSDQILENVRVELTLPEGFTTRAVI PCPKLPYNDLQTTFVIVEFPPDAANSIATFGATLRFVVKDCDPNTGEPES EEGYDDEYMLEDLELTVADQIQKTRKNNFQVSWDAADSEEWLQAEDTFVL SAVTTLQDAVNTIVKILGLGAANLSENVPEGTHLHTLLCSGTFRGGAEIL VRAKLALSEGVTLNLTVRSTDQDVAELITAAIG*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF22968-PA | 878 | GF22968-PA | 1..878 | 6..883 | 4500 | 95.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG11813-PA | 879 | GG11813-PA | 14..879 | 18..883 | 4558 | 98.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH18636-PA | 877 | GH18636-PA | 1..877 | 6..883 | 4350 | 92 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
gammaCOP-PB | 883 | CG1528-PB | 1..883 | 1..883 | 4463 | 100 | Plus |
gammaCOP-PD | 897 | CG1528-PD | 3..878 | 8..883 | 4366 | 98.9 | Plus |
gammaCOP-PC | 878 | CG1528-PC | 3..878 | 8..883 | 4366 | 98.9 | Plus |
gammaCOP-PA | 879 | CG1528-PA | 14..879 | 18..883 | 4366 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI23396-PA | 877 | GI23396-PA | 1..877 | 6..883 | 4291 | 91.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL23633-PA | 766 | GL23633-PA | 1..766 | 118..883 | 3892 | 94 | Plus |
Dper\GL23632-PA | 102 | GL23632-PA | 1..40 | 6..45 | 149 | 67.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA13624-PB | 877 | GA13624-PB | 1..877 | 1..883 | 4405 | 93.1 | Plus |
Dpse\GA13624-PA | 878 | GA13624-PA | 1..878 | 6..883 | 4395 | 92.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM16430-PA | 878 | GM16430-PA | 1..878 | 6..883 | 4606 | 98.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD21583-PA | 169 | GD21583-PA | 14..169 | 728..883 | 827 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ23086-PA | 877 | GJ23086-PA | 1..877 | 6..883 | 4337 | 91.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK11719-PA | 878 | GK11719-PA | 1..878 | 6..883 | 4385 | 92.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE10946-PA | 878 | GE10946-PA | 1..878 | 6..883 | 4574 | 97.6 | Plus |
Translation from 303 to 2954
> RE37840.hyp MNYFSLTSHKKHRGHPSAGPSNAYQNLEKTSVLQETRTFNETPVNPRKCI HILTKILYLINQGEQLVAREATDCFFAMTKLFQSKDVVLRRMVYLGIKEL SSIAEDVIIVTSSLTKDMTGKEDLYRAAAIRALCSITDNTMLQAVERYMK QCIVDKNAAVSCAALVSSLRLANTAGDVVKRWANEAQEALNSDNIMVQYH ALGLLYHIRKSDRLAVSKLVNKLTRGSLKSPYAVCMLIRIACKLIEEEDI PSEELSDSPLFTFIESCLRHKSEMVIYEAAHAIVNLKNTNPRMLSPAFSI LQLFCSSPKATLRFAAVRTLNKVAMTHPAAVTTCNLDLEGLITDSNRSVA TLAITTLLKTGAESSVERLMKQISTFVAEISDEFKVVVVQAICALCTKYP RKHTVLMNFLSGMLREEGGLEYKTSIVDTIITIIEENADAKESGLSHLCE FIEDCEHVSLAVRILHLLGKEGPFAATPSKYIRFIYNRVILESPIVRAAA VTAMAQFGASCPALLSNILVLLGRCQMDPDDEVRDRATYYLSILNSERPE LYKNYIIERENCSLALLEKSLVEHLNGDVDTRFDISIVPKAAIVKPVIAN DVMLVTSSAPRPPKITREEESAARLAQLPGIQVLGPIHRSTAPIQLTESE TEYTVQCIKHIFGQHVVFQFDCLNTLSDQILENVRVELTLPEGFTTRAVI PCPKLPYNDLQTTFVIVEFPPDAANSIATFGATLRFVVKDCDPNTGEPES EEGYDDEYMLEDLELTVADQIQKTRKNNFQVSWDAADSEEWLQAEDTFVL SAVTTLQDAVNTIVKILGLGAANLSENVPEGTHLHTLLCSGTFRGGAEIL VRAKLALSEGVTLNLTVRSTDQDVAELITAAIG*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
gammaCOP-PB | 883 | CG1528-PB | 1..883 | 1..883 | 4463 | 100 | Plus |
gammaCOP-PD | 897 | CG1528-PD | 3..878 | 8..883 | 4366 | 98.9 | Plus |
gammaCOP-PC | 878 | CG1528-PC | 3..878 | 8..883 | 4366 | 98.9 | Plus |
gammaCOP-PA | 879 | CG1528-PA | 14..879 | 18..883 | 4366 | 100 | Plus |