Clone RE37840 Report

Search the DGRC for RE37840

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:378
Well:40
Vector:pFlc-1
Associated Gene/TranscriptgammaCOP-RB
Protein status:RE37840.pep: gold
Preliminary Size:3052
Sequenced Size:3293

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1528 2002-10-19 Blastp of sequenced clone
CG1528 2003-01-01 Sim4 clustering to Release 3
gammaCop 2008-04-29 Release 5.5 accounting
gammaCop 2008-08-15 Release 5.9 accounting
gammaCop 2008-12-18 5.12 accounting

Clone Sequence Records

RE37840.complete Sequence

3293 bp (3293 high quality bases) assembled on 2002-10-19

GenBank Submission: BT001628

> RE37840.complete
GGGTGAACCAACTGGGCACCGCTGAGTGACGTGTAAGCGCAGCCAGAAAA
CCATTTCAATTGTTTTACCCACAATTTAACCGAAAGTTGCAAGACAATGG
GTTGGTTCCGCCGCGAGAAAGATGATGAGGAGGACGGTAAGTAGCAAGCT
AGCACCTGGAGCCAAGTTGTCCGCCGACCAGCGAAGCCAATCGAAGACAA
CCCAGTTGCTTGAAGGTGCTCCGCTGGCACAGACACACACTCACACACCC
ACTAACCCGACAAAGTCGAGAAAAATCGAGGTTTCCCTAAATTGACTGAG
AACATGAACTATTTTTCCCTTACCTCGCACAAAAAACATCGCGGCCATCC
GTCAGCAGGACCGAGCAATGCGTACCAGAACCTGGAAAAAACCTCGGTGC
TTCAGGAGACGCGCACCTTCAATGAGACGCCGGTGAACCCAAGGAAGTGC
ATCCACATCCTGACCAAAATCCTGTACCTGATTAATCAGGGTGAGCAGCT
TGTGGCCCGCGAGGCCACCGACTGCTTTTTTGCGATGACGAAGCTCTTCC
AATCTAAGGACGTGGTGCTGCGTCGTATGGTATACCTGGGCATCAAGGAG
CTGAGCTCCATTGCCGAGGACGTCATCATCGTGACTAGCTCGCTAACGAA
GGATATGACCGGCAAGGAAGACCTGTACAGGGCCGCCGCAATCCGGGCCT
TGTGCAGCATCACGGATAACACCATGTTGCAGGCCGTGGAGCGCTACATG
AAGCAGTGCATTGTTGACAAAAACGCGGCAGTTTCTTGTGCTGCATTGGT
CAGTTCTTTGAGATTGGCCAACACTGCCGGCGACGTGGTCAAGAGGTGGG
CAAACGAGGCCCAGGAGGCTTTGAACAGCGACAACATTATGGTACAGTAC
CACGCGTTGGGTCTGCTCTACCATATCCGCAAGTCGGATCGGCTGGCTGT
CTCCAAGTTGGTCAACAAGCTGACCAGAGGATCTCTAAAGAGTCCCTATG
CCGTTTGCATGCTGATACGCATTGCCTGTAAGCTGATCGAGGAGGAGGAC
ATTCCCTCTGAGGAGCTTTCCGATTCACCCTTGTTTACGTTCATCGAGTC
CTGTCTGCGCCACAAGAGCGAGATGGTCATCTACGAGGCGGCCCACGCCA
TTGTCAACCTCAAGAACACCAATCCGCGAATGCTATCGCCGGCGTTCTCC
ATCCTCCAGCTTTTCTGCAGCTCGCCGAAGGCAACGTTGCGCTTTGCGGC
TGTGCGCACGCTTAACAAGGTGGCGATGACGCACCCGGCTGCGGTGACCA
CCTGTAACTTGGACCTGGAAGGTCTCATCACGGACTCCAATCGATCGGTG
GCCACTCTGGCCATCACTACGCTGCTAAAGACCGGCGCTGAATCCTCGGT
AGAGCGTCTGATGAAGCAGATCTCCACGTTTGTGGCGGAGATTTCCGATG
AATTCAAGGTGGTGGTCGTGCAGGCCATTTGCGCTCTGTGCACCAAATAT
CCGCGCAAGCACACAGTGCTGATGAACTTCCTCAGCGGTATGCTGCGCGA
GGAGGGTGGCCTTGAATACAAGACCTCCATAGTTGACACCATCATCACGA
TCATCGAGGAGAATGCGGACGCCAAGGAGTCCGGTTTGTCGCATCTGTGC
GAGTTCATCGAGGATTGTGAACACGTTTCACTGGCGGTGAGGATTCTTCA
CCTGCTGGGCAAGGAGGGACCCTTTGCGGCCACACCCTCCAAGTATATAC
GCTTTATCTACAACCGCGTCATCTTGGAGAGCCCTATTGTGCGAGCAGCC
GCGGTCACGGCCATGGCCCAGTTTGGAGCATCTTGTCCAGCCTTGTTAAG
CAATATCCTCGTTCTGCTGGGTCGTTGCCAGATGGACCCGGACGACGAGG
TGCGTGACCGTGCCACCTACTACCTTAGCATTCTTAACTCGGAAAGGCCA
GAGCTGTACAAGAACTACATCATCGAAAGGGAGAACTGTTCTCTGGCTCT
GCTGGAGAAGTCGCTGGTCGAACATCTGAATGGTGACGTGGACACACGCT
TCGATATTTCCATTGTGCCCAAGGCGGCCATAGTTAAGCCAGTTATTGCC
AACGACGTAATGCTAGTTACCAGCAGTGCTCCACGGCCGCCGAAGATCAC
GCGCGAGGAGGAGAGTGCTGCACGTCTGGCACAGCTGCCGGGCATCCAGG
TGCTGGGCCCCATCCATCGCAGCACAGCTCCCATCCAGCTTACTGAAAGT
GAAACGGAGTACACGGTGCAGTGCATCAAACACATATTCGGCCAGCACGT
GGTCTTCCAGTTCGATTGCTTGAATACGCTGTCCGACCAAATCCTTGAAA
ATGTGCGGGTGGAACTCACGCTGCCGGAAGGATTCACAACCAGGGCGGTC
ATTCCATGTCCCAAGCTACCCTACAACGATCTGCAAACCACTTTTGTCAT
CGTAGAATTCCCGCCCGACGCCGCCAATTCCATAGCCACCTTTGGTGCCA
CTTTACGATTTGTGGTCAAGGACTGCGACCCCAACACCGGCGAGCCGGAG
TCAGAGGAGGGCTATGACGACGAGTACATGCTAGAGGATTTGGAGCTGAC
GGTTGCCGATCAGATACAGAAAACCAGAAAGAACAATTTCCAAGTGTCCT
GGGATGCGGCTGACAGCGAAGAATGGCTACAAGCCGAGGATACCTTTGTG
CTGTCGGCAGTGACCACCTTGCAGGATGCCGTCAACACTATAGTCAAGAT
CCTGGGCTTGGGCGCTGCAAACCTCTCTGAGAATGTGCCCGAGGGTACGC
ACCTGCATACGTTGCTCTGTTCAGGAACCTTCAGAGGCGGCGCCGAGATT
CTTGTGCGGGCCAAGCTGGCGCTTTCAGAAGGCGTCACGCTCAATCTGAC
GGTGCGCAGCACGGACCAGGACGTGGCGGAGCTGATAACGGCGGCCATTG
GATAAGACAGCGAGCCATGCAGGAACCTCCTTTGGTTCCTGCGTGCTGTG
AACGTAATCTGAACTCCCTACGAAACTACGAAACAGAAAGTTACGCCTAA
TCAAAATATAATTTGTACCTTTAAGCGACTGTCTCTGTAATAATCTTAGA
GCCCTGTCCACAATCCGGCATGTGCAACATTGAGTATTGCTACTGGCCAT
TTCCGAAAAGTTTGTGTGGCGATGCAGCCTTCGGTGTGCATCGCATATGT
TTATTATCCCCATTTAGCCTGTGCATTTAGCTTAAGTATGGAAACAAAAT
ATTAAAAATACATGTATATGCAATGCTAAAAAAAAAAAAAAAA

RE37840.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:38:02
Subject Length Description Subject Range Query Range Score Percent Strand
gammaCop-RB 3386 gammaCop-RB 50..3322 4..3276 16335 99.9 Plus
gammaCop-RA 3294 gammaCop-RA 289..3210 355..3276 14595 99.9 Plus
gammaCop-RC 3314 gammaCop-RC 289..3207 358..3276 14580 99.9 Plus
gammaCop-RC 3314 gammaCop-RC 157..290 4..137 655 99.2 Plus
gammaCop-RA 3294 gammaCop-RA 157..289 4..136 650 99.2 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:43:56
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 27395620..27397091 1014..2485 7315 99.8 Plus
chr3R 27901430 chr3R 27394513..27395523 4..1014 5040 99.9 Plus
chr3R 27901430 chr3R 27397620..27398074 2822..3276 2275 100 Plus
chr3R 27901430 chr3R 27397166..27397353 2484..2671 940 100 Plus
chr3R 27901430 chr3R 27397410..27397565 2670..2825 780 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:53:27 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:43:54
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31573253..31574724 1014..2485 7345 99.9 Plus
3R 32079331 3R 31572146..31573156 4..1014 5040 99.9 Plus
3R 32079331 3R 31575253..31575707 2822..3276 2275 100 Plus
3R 32079331 3R 31574799..31574986 2484..2671 940 100 Plus
3R 32079331 3R 31575043..31575198 2670..2825 780 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:11:50
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 31314084..31315555 1014..2485 7345 99.9 Plus
3R 31820162 3R 31312977..31313987 4..1014 5040 99.9 Plus
3R 31820162 3R 31316084..31316538 2822..3276 2275 100 Plus
3R 31820162 3R 31315630..31315817 2484..2671 940 100 Plus
3R 31820162 3R 31315874..31316029 2670..2825 780 100 Plus
Blast to na_te.dros performed on 2019-03-15 22:43:54 has no hits.

RE37840.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:44:55 Download gff for RE37840.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 27395621..27397091 1015..2485 99 -> Plus
chr3R 27397168..27397353 2486..2671 100 -> Plus
chr3R 27394510..27395523 1..1014 99 -> Plus
chr3R 27397412..27397564 2672..2824 100 -> Plus
chr3R 27397623..27398074 2825..3277 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:13:31 Download gff for RE37840.complete
Subject Subject Range Query Range Percent Splice Strand
gammaCop-RB 1..2652 304..2955 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:09:45 Download gff for RE37840.complete
Subject Subject Range Query Range Percent Splice Strand
gammaCop-RB 1..2652 304..2955 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:31:13 Download gff for RE37840.complete
Subject Subject Range Query Range Percent Splice Strand
gammaCop-RD 40..2694 358..3012 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:00:39 Download gff for RE37840.complete
Subject Subject Range Query Range Percent Splice Strand
gammaCop-RB 1..2652 304..2955 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:33:40 Download gff for RE37840.complete
Subject Subject Range Query Range Percent Splice Strand
gammaCOP-RD 40..2694 358..3012 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:30:44 Download gff for RE37840.complete
Subject Subject Range Query Range Percent Splice Strand
gammaCop-RB 2..3276 3..3277 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:09:45 Download gff for RE37840.complete
Subject Subject Range Query Range Percent Splice Strand
gammaCop-RB 2..3276 3..3276 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:31:13 Download gff for RE37840.complete
Subject Subject Range Query Range Percent Splice Strand
gammaCop-RB 2..3276 3..3276 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:00:39 Download gff for RE37840.complete
Subject Subject Range Query Range Percent Splice Strand
gammaCop-RB 2..3276 3..3277 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:33:40 Download gff for RE37840.complete
Subject Subject Range Query Range Percent Splice Strand
gammaCOP-RB 2..3276 3..3276 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:44:55 Download gff for RE37840.complete
Subject Subject Range Query Range Percent Splice Strand
3R 31572143..31573156 1..1014 99 -> Plus
3R 31573254..31574724 1015..2485 99 -> Plus
3R 31574801..31574986 2486..2671 100 -> Plus
3R 31575045..31575197 2672..2824 100 -> Plus
3R 31575256..31575707 2825..3277 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:44:55 Download gff for RE37840.complete
Subject Subject Range Query Range Percent Splice Strand
3R 31572143..31573156 1..1014 99 -> Plus
3R 31573254..31574724 1015..2485 99 -> Plus
3R 31574801..31574986 2486..2671 100 -> Plus
3R 31575045..31575197 2672..2824 100 -> Plus
3R 31575256..31575707 2825..3277 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:44:55 Download gff for RE37840.complete
Subject Subject Range Query Range Percent Splice Strand
3R 31572143..31573156 1..1014 99 -> Plus
3R 31573254..31574724 1015..2485 99 -> Plus
3R 31574801..31574986 2486..2671 100 -> Plus
3R 31575045..31575197 2672..2824 100 -> Plus
3R 31575256..31575707 2825..3277 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:31:13 Download gff for RE37840.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27397865..27398878 1..1014 99 -> Plus
arm_3R 27398976..27400446 1015..2485 99 -> Plus
arm_3R 27400523..27400708 2486..2671 100 -> Plus
arm_3R 27400767..27400919 2672..2824 100 -> Plus
arm_3R 27400978..27401429 2825..3277 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:32:10 Download gff for RE37840.complete
Subject Subject Range Query Range Percent Splice Strand
3R 31312974..31313987 1..1014 99 -> Plus
3R 31314085..31315555 1015..2485 99 -> Plus
3R 31315632..31315817 2486..2671 100 -> Plus
3R 31315876..31316028 2672..2824 100 -> Plus
3R 31316087..31316538 2825..3277 99   Plus

RE37840.pep Sequence

Translation from 303 to 2954

> RE37840.pep
MNYFSLTSHKKHRGHPSAGPSNAYQNLEKTSVLQETRTFNETPVNPRKCI
HILTKILYLINQGEQLVAREATDCFFAMTKLFQSKDVVLRRMVYLGIKEL
SSIAEDVIIVTSSLTKDMTGKEDLYRAAAIRALCSITDNTMLQAVERYMK
QCIVDKNAAVSCAALVSSLRLANTAGDVVKRWANEAQEALNSDNIMVQYH
ALGLLYHIRKSDRLAVSKLVNKLTRGSLKSPYAVCMLIRIACKLIEEEDI
PSEELSDSPLFTFIESCLRHKSEMVIYEAAHAIVNLKNTNPRMLSPAFSI
LQLFCSSPKATLRFAAVRTLNKVAMTHPAAVTTCNLDLEGLITDSNRSVA
TLAITTLLKTGAESSVERLMKQISTFVAEISDEFKVVVVQAICALCTKYP
RKHTVLMNFLSGMLREEGGLEYKTSIVDTIITIIEENADAKESGLSHLCE
FIEDCEHVSLAVRILHLLGKEGPFAATPSKYIRFIYNRVILESPIVRAAA
VTAMAQFGASCPALLSNILVLLGRCQMDPDDEVRDRATYYLSILNSERPE
LYKNYIIERENCSLALLEKSLVEHLNGDVDTRFDISIVPKAAIVKPVIAN
DVMLVTSSAPRPPKITREEESAARLAQLPGIQVLGPIHRSTAPIQLTESE
TEYTVQCIKHIFGQHVVFQFDCLNTLSDQILENVRVELTLPEGFTTRAVI
PCPKLPYNDLQTTFVIVEFPPDAANSIATFGATLRFVVKDCDPNTGEPES
EEGYDDEYMLEDLELTVADQIQKTRKNNFQVSWDAADSEEWLQAEDTFVL
SAVTTLQDAVNTIVKILGLGAANLSENVPEGTHLHTLLCSGTFRGGAEIL
VRAKLALSEGVTLNLTVRSTDQDVAELITAAIG*

RE37840.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:31:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22968-PA 878 GF22968-PA 1..878 6..883 4500 95.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:31:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11813-PA 879 GG11813-PA 14..879 18..883 4558 98.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:31:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18636-PA 877 GH18636-PA 1..877 6..883 4350 92 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:14:14
Subject Length Description Subject Range Query Range Score Percent Strand
gammaCOP-PB 883 CG1528-PB 1..883 1..883 4463 100 Plus
gammaCOP-PD 897 CG1528-PD 3..878 8..883 4366 98.9 Plus
gammaCOP-PC 878 CG1528-PC 3..878 8..883 4366 98.9 Plus
gammaCOP-PA 879 CG1528-PA 14..879 18..883 4366 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:31:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23396-PA 877 GI23396-PA 1..877 6..883 4291 91.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:31:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23633-PA 766 GL23633-PA 1..766 118..883 3892 94 Plus
Dper\GL23632-PA 102 GL23632-PA 1..40 6..45 149 67.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:31:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13624-PB 877 GA13624-PB 1..877 1..883 4405 93.1 Plus
Dpse\GA13624-PA 878 GA13624-PA 1..878 6..883 4395 92.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:31:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16430-PA 878 GM16430-PA 1..878 6..883 4606 98.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:31:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21583-PA 169 GD21583-PA 14..169 728..883 827 100 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:31:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23086-PA 877 GJ23086-PA 1..877 6..883 4337 91.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:31:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11719-PA 878 GK11719-PA 1..878 6..883 4385 92.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:31:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10946-PA 878 GE10946-PA 1..878 6..883 4574 97.6 Plus

RE37840.hyp Sequence

Translation from 303 to 2954

> RE37840.hyp
MNYFSLTSHKKHRGHPSAGPSNAYQNLEKTSVLQETRTFNETPVNPRKCI
HILTKILYLINQGEQLVAREATDCFFAMTKLFQSKDVVLRRMVYLGIKEL
SSIAEDVIIVTSSLTKDMTGKEDLYRAAAIRALCSITDNTMLQAVERYMK
QCIVDKNAAVSCAALVSSLRLANTAGDVVKRWANEAQEALNSDNIMVQYH
ALGLLYHIRKSDRLAVSKLVNKLTRGSLKSPYAVCMLIRIACKLIEEEDI
PSEELSDSPLFTFIESCLRHKSEMVIYEAAHAIVNLKNTNPRMLSPAFSI
LQLFCSSPKATLRFAAVRTLNKVAMTHPAAVTTCNLDLEGLITDSNRSVA
TLAITTLLKTGAESSVERLMKQISTFVAEISDEFKVVVVQAICALCTKYP
RKHTVLMNFLSGMLREEGGLEYKTSIVDTIITIIEENADAKESGLSHLCE
FIEDCEHVSLAVRILHLLGKEGPFAATPSKYIRFIYNRVILESPIVRAAA
VTAMAQFGASCPALLSNILVLLGRCQMDPDDEVRDRATYYLSILNSERPE
LYKNYIIERENCSLALLEKSLVEHLNGDVDTRFDISIVPKAAIVKPVIAN
DVMLVTSSAPRPPKITREEESAARLAQLPGIQVLGPIHRSTAPIQLTESE
TEYTVQCIKHIFGQHVVFQFDCLNTLSDQILENVRVELTLPEGFTTRAVI
PCPKLPYNDLQTTFVIVEFPPDAANSIATFGATLRFVVKDCDPNTGEPES
EEGYDDEYMLEDLELTVADQIQKTRKNNFQVSWDAADSEEWLQAEDTFVL
SAVTTLQDAVNTIVKILGLGAANLSENVPEGTHLHTLLCSGTFRGGAEIL
VRAKLALSEGVTLNLTVRSTDQDVAELITAAIG*

RE37840.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:34:07
Subject Length Description Subject Range Query Range Score Percent Strand
gammaCOP-PB 883 CG1528-PB 1..883 1..883 4463 100 Plus
gammaCOP-PD 897 CG1528-PD 3..878 8..883 4366 98.9 Plus
gammaCOP-PC 878 CG1528-PC 3..878 8..883 4366 98.9 Plus
gammaCOP-PA 879 CG1528-PA 14..879 18..883 4366 100 Plus