Clone RE38102 Report

Search the DGRC for RE38102

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:381
Well:2
Vector:pFlc-1
Associated Gene/TranscriptCG12974-RB
Protein status:RE38102.pep: gold
Sequenced Size:1456

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12974 2008-04-29 Release 5.5 accounting
CG12974 2008-04-29 Picked prior to 5.5
CG12974 2008-08-15 Release 5.9 accounting
CG12974 2008-12-18 5.12 accounting

Clone Sequence Records

RE38102.complete Sequence

1456 bp assembled on 2007-11-15

GenBank Submission: BT031290

> RE38102.complete
AGTTGGCCAACAGACGTCGCGTACTGCAAAAGCGCACTCAACCCGATCGA
TTTGAGTCCCGCATACGGGGCGTGAGAATATCTCCCAGTATCTGGAAACC
ACCCCTATATATCGAACAGTCACTGCAAAATGTATTCAGCACCAGCGGCA
AAAATCAAGCACTTTGGCTCCCTTAAAACGGTAGCAGCTTGGGCCGGAAT
TCTCGGAGTGGCCCAGTCCATCATCTGGATGGGCTTGACCATAACAGCGA
TATGTGCCTACAATTGTGTCCTGTATATTACAAATGACCTCACCTATGGC
TCCATGGTCAAGACTGTATTCTTTGACGTGTACTTCAAGGGCAGTTGCAA
GATGAATCCCAGTGATTACCAGAACTACGACCAAACCATCCTGAATACAG
TGACTACTGTTTTTGATCCCACCCAGATTTTGATCTGGAATTCGGTCTAC
CTGGGCGTTTCGGTTTGCTGGCTAATCGTCTCCGTTGTGCTGCTACTGTG
GGTGCGCAAGGACAACCCGAAGCAGACCGTGACTGCCATCTACATCTGGG
CCTTCTTCGTGGCCACCATATGCTGCATGGATGTAGCTTCTGGAGTGATC
TTCGGCGTGGACTACGGACGTTTCCACAAGGAGGCTCTGAGGTATAATGC
CAATAGTATCAATGCTGGTGTCATCTATCCCTTGGCTGCCACCTTGATCG
CCGGAGGAGTGGCTGCCATTTCCATGATGGTCATCTCCTTCAAGGGATTC
GTTCTGTGGTTCATTAACTTTGGACTGCTCGCATACCTTGTCGCGAGAGC
CATTCGAATTTCCACCGATAAGGACAATGTGGATACTTTGTTCAATCCTC
GCAAGGATTCCAATGATATTCTGACCACCAGGACCCCGATTCGCGCCTAC
GAGGAGGTGGAGGTCCAGGCGTATAACAATGCCGCCTACGTTCCGGAAAC
CCGTTCCATGGCCGAGACCATCCAGGTGAACGAGGGAGCCATCGTGCGGG
CGGCGCACTTGTCGATGGACTCGAACCTAATGGATCGTCGCTTCAGGGAC
CTCAACGCGTACCAGCAGTACCCGCCTCCGAATCCGCAGCAAAGTCGCCC
GCTGAAGCAATCTTCGCAGAATCCCATGGAGACCATTGTGGTGGCCACCT
CGGGATTCCCCGTGCCGGACTACTCCCCGCAGCCCAGTCCCAATGGCGTT
CTGCGCCACAACCAGTACTAGATTACTAAGCCCCTTGGCGCCCCCAAAAA
AGCCCTCTTCGATACTATAATTCTCAAATAATCCCAGCTAAAGTTTAGTT
CAAATTTTATCAGGGGGGGCAACTTCTTCTGCGTTTTTATTCTTATTTAT
TTGCATGTTTATAACGATATAAGTGTACAGCTGTAAATATATAAAGCCGT
TCTAGTTCCGCAGTGGAATGGTATTTGTTTATATAAAAAGAAAAAAAAAA
AAAAAA

RE38102.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:36:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG12974.a 1868 CG12974.a 213..1647 1..1435 7175 100 Plus
CG12974-RB 1664 CG12974-RB 213..1647 1..1435 7175 100 Plus
CG12974-RA 1442 CG12974-RA 242..1442 210..1410 6005 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 15:11:38
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 21270997..21271526 1435..906 2650 100 Minus
chr3L 24539361 chr3L 21272153..21272485 832..500 1665 100 Minus
chr3L 24539361 chr3L 21273189..21273479 500..210 1455 100 Minus
chr3L 24539361 chr3L 21274062..21274272 211..1 1055 100 Minus
chr3L 24539361 chr3L 21271588..21271663 906..831 380 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:53:35 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 15:11:36
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21281989..21282518 1435..906 2650 100 Minus
3L 28110227 3L 21283145..21283477 832..500 1665 100 Minus
3L 28110227 3L 21284181..21284471 500..210 1455 100 Minus
3L 28110227 3L 21285054..21285264 211..1 1055 100 Minus
3L 28110227 3L 21282580..21282655 906..831 380 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:33:11
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 21275089..21275618 1435..906 2650 100 Minus
3L 28103327 3L 21276245..21276577 832..500 1665 100 Minus
3L 28103327 3L 21277281..21277571 500..210 1455 100 Minus
3L 28103327 3L 21278154..21278364 211..1 1055 100 Minus
3L 28103327 3L 21275680..21275755 906..831 380 100 Minus
Blast to na_te.dros performed on 2019-03-15 15:11:36 has no hits.

RE38102.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 15:12:19 Download gff for RE38102.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 21270995..21271526 906..1440 99 <- Minus
chr3L 21271589..21271662 832..905 100 <- Minus
chr3L 21272154..21272485 500..831 100 <- Minus
chr3L 21273190..21273478 211..499 100 <- Minus
chr3L 21274063..21274272 1..210 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:13:41 Download gff for RE38102.complete
Subject Subject Range Query Range Percent Splice Strand
CG12974-RB 1..1092 130..1221 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:06:30 Download gff for RE38102.complete
Subject Subject Range Query Range Percent Splice Strand
CG12974-RB 1..1092 130..1221 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:06:41 Download gff for RE38102.complete
Subject Subject Range Query Range Percent Splice Strand
CG12974-RB 1..1092 130..1221 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:52:47 Download gff for RE38102.complete
Subject Subject Range Query Range Percent Splice Strand
CG12974-RB 1..1092 130..1221 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:30:58 Download gff for RE38102.complete
Subject Subject Range Query Range Percent Splice Strand
CG12974-RB 1..1092 130..1221 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 17:01:51 Download gff for RE38102.complete
Subject Subject Range Query Range Percent Splice Strand
CG12974-RB 1..1410 1..1410 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:06:30 Download gff for RE38102.complete
Subject Subject Range Query Range Percent Splice Strand
CG12974-RB 1..1410 1..1410 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:06:41 Download gff for RE38102.complete
Subject Subject Range Query Range Percent Splice Strand
CG12974-RB 173..1606 1..1434 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:52:47 Download gff for RE38102.complete
Subject Subject Range Query Range Percent Splice Strand
CG12974-RB 1..1410 1..1410 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:30:58 Download gff for RE38102.complete
Subject Subject Range Query Range Percent Splice Strand
CG12974-RD 173..1609 1..1440 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:12:19 Download gff for RE38102.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21284182..21284470 211..499 100 <- Minus
3L 21285055..21285264 1..210 100   Minus
3L 21281987..21282518 906..1440 99 <- Minus
3L 21282581..21282654 832..905 100 <- Minus
3L 21283146..21283477 500..831 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:12:19 Download gff for RE38102.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21284182..21284470 211..499 100 <- Minus
3L 21285055..21285264 1..210 100   Minus
3L 21281987..21282518 906..1440 99 <- Minus
3L 21282581..21282654 832..905 100 <- Minus
3L 21283146..21283477 500..831 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:12:19 Download gff for RE38102.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21284182..21284470 211..499 100 <- Minus
3L 21285055..21285264 1..210 100   Minus
3L 21281987..21282518 906..1440 99 <- Minus
3L 21282581..21282654 832..905 100 <- Minus
3L 21283146..21283477 500..831 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:06:41 Download gff for RE38102.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21275087..21275618 906..1440 99 <- Minus
arm_3L 21275681..21275754 832..905 100 <- Minus
arm_3L 21276246..21276577 500..831 100 <- Minus
arm_3L 21277282..21277570 211..499 100 <- Minus
arm_3L 21278155..21278364 1..210 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 11:58:46 Download gff for RE38102.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21278155..21278364 1..210 100   Minus
3L 21275087..21275618 906..1440 99 <- Minus
3L 21275681..21275754 832..905 100 <- Minus
3L 21276246..21276577 500..831 100 <- Minus
3L 21277282..21277570 211..499 100 <- Minus

RE38102.pep Sequence

Translation from 129 to 1220

> RE38102.pep
MYSAPAAKIKHFGSLKTVAAWAGILGVAQSIIWMGLTITAICAYNCVLYI
TNDLTYGSMVKTVFFDVYFKGSCKMNPSDYQNYDQTILNTVTTVFDPTQI
LIWNSVYLGVSVCWLIVSVVLLLWVRKDNPKQTVTAIYIWAFFVATICCM
DVASGVIFGVDYGRFHKEALRYNANSINAGVIYPLAATLIAGGVAAISMM
VISFKGFVLWFINFGLLAYLVARAIRISTDKDNVDTLFNPRKDSNDILTT
RTPIRAYEEVEVQAYNNAAYVPETRSMAETIQVNEGAIVRAAHLSMDSNL
MDRRFRDLNAYQQYPPPNPQQSRPLKQSSQNPMETIVVATSGFPVPDYSP
QPSPNGVLRHNQY*

RE38102.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 23:31:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10173-PA 366 GF10173-PA 1..366 1..363 1553 79 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 23:31:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13247-PA 363 GG13247-PA 1..363 1..363 1726 91.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 23:31:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16516-PA 366 GH16516-PA 3..366 4..363 1260 67.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:11:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG12974-PD 363 CG12974-PD 1..363 1..363 1898 100 Plus
CG12974-PB 363 CG12974-PB 1..363 1..363 1898 100 Plus
CG12974-PC 330 CG12974-PC 1..330 34..363 1728 100 Plus
CG12974-PA 330 CG12974-PA 1..330 34..363 1728 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 23:31:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12197-PA 367 GI12197-PA 1..367 1..363 1301 65.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 23:31:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24592-PA 363 GL24592-PA 5..363 8..363 1453 74.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 23:31:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11948-PA 363 GA11948-PA 5..363 8..363 1453 74.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 23:31:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22152-PA 363 GM22152-PA 1..363 1..363 1887 96.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 23:31:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12128-PA 363 GD12128-PA 1..363 1..363 1888 96.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 23:31:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11429-PA 365 GJ11429-PA 10..364 9..361 1317 70.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 23:31:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16676-PA 370 GK16676-PA 1..369 1..363 1288 65.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 23:31:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22959-PA 363 GE22959-PA 1..363 1..363 1755 93.1 Plus
Dyak\GE22348-PA 136 GE22348-PA 8..136 235..363 578 93.8 Plus

RE38102.hyp Sequence

Translation from 129 to 1220

> RE38102.hyp
MYSAPAAKIKHFGSLKTVAAWAGILGVAQSIIWMGLTITAICAYNCVLYI
TNDLTYGSMVKTVFFDVYFKGSCKMNPSDYQNYDQTILNTVTTVFDPTQI
LIWNSVYLGVSVCWLIVSVVLLLWVRKDNPKQTVTAIYIWAFFVATICCM
DVASGVIFGVDYGRFHKEALRYNANSINAGVIYPLAATLIAGGVAAISMM
VISFKGFVLWFINFGLLAYLVARAIRISTDKDNVDTLFNPRKDSNDILTT
RTPIRAYEEVEVQAYNNAAYVPETRSMAETIQVNEGAIVRAAHLSMDSNL
MDRRFRDLNAYQQYPPPNPQQSRPLKQSSQNPMETIVVATSGFPVPDYSP
QPSPNGVLRHNQY*

RE38102.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:23:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG12974-PD 363 CG12974-PD 1..363 1..363 1898 100 Plus
CG12974-PB 363 CG12974-PB 1..363 1..363 1898 100 Plus
CG12974-PC 330 CG12974-PC 1..330 34..363 1728 100 Plus
CG12974-PA 330 CG12974-PA 1..330 34..363 1728 100 Plus