BDGP Sequence Production Resources |
Search the DGRC for RE38147
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 381 |
Well: | 47 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG17029-RA |
Protein status: | RE38147.pep: gold |
Preliminary Size: | 855 |
Sequenced Size: | 1033 |
Gene | Date | Evidence |
---|---|---|
CG17029 | 2002-01-01 | Sim4 clustering to Release 2 |
CG17029 | 2002-06-25 | Blastp of sequenced clone |
CG17029 | 2003-01-01 | Sim4 clustering to Release 3 |
CG17029 | 2008-04-29 | Release 5.5 accounting |
CG17029 | 2008-08-15 | Release 5.9 accounting |
CG17029 | 2008-12-18 | 5.12 accounting |
1033 bp (1033 high quality bases) assembled on 2002-06-25
GenBank Submission: AY128476
> RE38147.complete AGTTCTGCTGCTCAGTCGGAAACCAACAGAAATAGCAATGAGTTCCGCGG TCAGCGAGTCCAAGCTCAAGGAGTACTACGATGTGGCCCTGAAACTGGTC CTCAAGTGCGGGCCTCTGATGCAGGAGGGCTATCAGAAGGCAAAGACGGA ATACAAGGTCAAGGCGGACTTCTACGACCTGGTGACCGTGTACGATAAGC AAATCGAGGATATTTTGACCGAGGGATTGGTGGCCGCCTTTCCCGAATCC CTGATCATTGGCGAGGAGGAGTCGGCAGTTTCACAGCGCCAGGCGGAGCT GACTGATGCACCCACGTGGATCATAGATCCCATCGACGGCACCACAAACT TCATTCACCGCATCCCGCACTGCTGCATCTCCGTGGGCCTGGCCATCAAC AAGGAGCTGGTCGTGGGCATTATCTACAATCCACCGGCGAATGAACTATT CTCCGCCTACAAGGGACACGGAGCCTATCTGAATGGCGAACCCATCCACA CATCCAAAGTGACGACGATCAAGCAAGCAGTGATTGCCTACGAGATCTCC CTGATCCACGCCGCCGGAGTGAGGGACAAGAATGTGAAGCGACTGTACAA GATGGCCTCGAATGCCACGGGAACCAGGTGTTTCGGAAGTGCCGCCCTGA CCCTGTGCTACGTGGCCACGGGCCAGTGCGATGCCTATCATGTGGAGGAT CTGAAACCGTGGGACATTGCTGCCGGAGCCATCATTCTGACCGAAGCTGG CGGCACTGTGTGCCATACCAGCGGATCCAAATTCGATGTGATGAAACCGG ATTGCGTGTGCGCCGCCACGCCGGAGTTGGCCAAGAATGTGATTAGTCTT ATCGAAGAGGCCGGTCAGATTACAGAGTACACATTTAAGTAAAGACAGTT AAAGGCTCAGTATGCAAAGACAGTATCCACATTTATCACTTGTAAACTAT TCTAATCGCGCAGATATTCCAGTACAATAAAACGACCTAAGTACATATAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG17029-RA | 1223 | CG17029-RA | 170..1169 | 1..1000 | 5000 | 100 | Plus |
CG17028-RA | 964 | CG17028-RA | 269..417 | 296..444 | 295 | 79.8 | Plus |
CG17028-RA | 964 | CG17028-RA | 546..784 | 573..811 | 280 | 74.4 | Plus |
CG9391-RA | 1124 | CG9391-RA | 370..464 | 297..391 | 190 | 80 | Plus |
CG17028-RA | 964 | CG17028-RA | 60..177 | 87..204 | 140 | 74.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 15966843..15967359 | 1..517 | 2510 | 99 | Plus |
chr3L | 24539361 | chr3L | 15967758..15968239 | 517..998 | 2395 | 99.8 | Plus |
chr3L | 24539361 | chr3L | 15968605..15968753 | 296..444 | 295 | 79.9 | Plus |
chr3L | 24539361 | chr3L | 21256405..21256499 | 391..297 | 190 | 80 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 15977039..15977555 | 1..517 | 2585 | 100 | Plus |
3L | 28110227 | 3L | 15977954..15978437 | 517..1000 | 2420 | 100 | Plus |
3L | 28110227 | 3L | 15978801..15978949 | 296..444 | 295 | 79.9 | Plus |
3L | 28110227 | 3L | 21267397..21267491 | 391..297 | 190 | 80 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 15970139..15970655 | 1..517 | 2585 | 100 | Plus |
3L | 28103327 | 3L | 15971054..15971537 | 517..1000 | 2420 | 100 | Plus |
3L | 28103327 | 3L | 15971901..15972049 | 296..444 | 295 | 79.8 | Plus |
3L | 28103327 | 3L | 21260497..21260591 | 391..297 | 190 | 80 | Minus |
3L | 28103327 | 3L | 15972629..15972757 | 683..811 | 165 | 75.1 | Plus |
3L | 28103327 | 3L | 15968816..15968871 | 296..351 | 160 | 85.7 | Plus |
3L | 28103327 | 3L | 15973728..15973768 | 296..336 | 145 | 90.2 | Plus |
3L | 28103327 | 3L | 15971692..15971809 | 87..204 | 140 | 74.5 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 15966843..15967359 | 1..517 | 99 | -> | Plus |
chr3L | 15967759..15968239 | 518..998 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17029-RA | 1..855 | 38..892 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17029-RA | 1..855 | 38..892 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17029-RA | 1..855 | 38..892 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17029-RA | 1..855 | 38..892 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17029-RA | 1..855 | 38..892 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17029-RA | 5..1002 | 1..998 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17029-RA | 16..1013 | 1..998 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17029-RA | 7..1004 | 1..998 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17029-RA | 5..1002 | 1..998 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17029-RA | 7..1004 | 1..998 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 15977039..15977555 | 1..517 | 100 | -> | Plus |
3L | 15977955..15978435 | 518..998 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 15977039..15977555 | 1..517 | 100 | -> | Plus |
3L | 15977955..15978435 | 518..998 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 15977039..15977555 | 1..517 | 100 | -> | Plus |
3L | 15977955..15978435 | 518..998 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 15970139..15970655 | 1..517 | 100 | -> | Plus |
arm_3L | 15971055..15971535 | 518..998 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 15970139..15970655 | 1..517 | 100 | -> | Plus |
3L | 15971055..15971535 | 518..998 | 100 | Plus |
Translation from 0 to 891
> RE38147.hyp VLLLSRKPTEIAMSSAVSESKLKEYYDVALKLVLKCGPLMQEGYQKAKTE YKVKADFYDLVTVYDKQIEDILTEGLVAAFPESLIIGEEESAVSQRQAEL TDAPTWIIDPIDGTTNFIHRIPHCCISVGLAINKELVVGIIYNPPANELF SAYKGHGAYLNGEPIHTSKVTTIKQAVIAYEISLIHAAGVRDKNVKRLYK MASNATGTRCFGSAALTLCYVATGQCDAYHVEDLKPWDIAAGAIILTEAG GTVCHTSGSKFDVMKPDCVCAATPELAKNVISLIEEAGQITEYTFK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG17029-PB | 284 | CG17029-PB | 1..284 | 13..296 | 1473 | 100 | Plus |
CG17029-PA | 284 | CG17029-PA | 1..284 | 13..296 | 1473 | 100 | Plus |
CG17028-PB | 284 | CG17028-PB | 1..284 | 13..296 | 1054 | 69.4 | Plus |
CG17028-PA | 284 | CG17028-PA | 1..284 | 13..296 | 1054 | 69.4 | Plus |
CG17027-PB | 288 | CG17027-PB | 2..277 | 15..289 | 713 | 46.7 | Plus |
Translation from 37 to 891
> RE38147.pep MSSAVSESKLKEYYDVALKLVLKCGPLMQEGYQKAKTEYKVKADFYDLVT VYDKQIEDILTEGLVAAFPESLIIGEEESAVSQRQAELTDAPTWIIDPID GTTNFIHRIPHCCISVGLAINKELVVGIIYNPPANELFSAYKGHGAYLNG EPIHTSKVTTIKQAVIAYEISLIHAAGVRDKNVKRLYKMASNATGTRCFG SAALTLCYVATGQCDAYHVEDLKPWDIAAGAIILTEAGGTVCHTSGSKFD VMKPDCVCAATPELAKNVISLIEEAGQITEYTFK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF24103-PA | 284 | GF24103-PA | 1..284 | 1..284 | 1437 | 93.3 | Plus |
Dana\GF24104-PA | 284 | GF24104-PA | 1..284 | 1..284 | 1006 | 64.1 | Plus |
Dana\GF24105-PA | 288 | GF24105-PA | 2..277 | 3..277 | 702 | 46 | Plus |
Dana\GF24102-PA | 286 | GF24102-PA | 2..277 | 4..277 | 676 | 44.6 | Plus |
Dana\GF10177-PA | 277 | GF10177-PA | 7..263 | 10..268 | 527 | 41.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG15938-PA | 284 | GG15938-PA | 1..284 | 1..284 | 1488 | 97.9 | Plus |
Dere\GG15939-PA | 288 | GG15939-PA | 2..277 | 3..277 | 713 | 46.7 | Plus |
Dere\GG15937-PA | 284 | GG15937-PA | 2..277 | 4..277 | 696 | 46 | Plus |
Dere\GG13252-PA | 278 | GG13252-PA | 12..264 | 15..268 | 532 | 41.7 | Plus |
Dere\GG13251-PA | 602 | GG13251-PA | 278..546 | 6..274 | 439 | 37.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH14775-PA | 286 | GH14775-PA | 4..286 | 2..284 | 1275 | 81.3 | Plus |
Dgri\GH14777-PA | 286 | GH14777-PA | 1..285 | 1..283 | 912 | 60 | Plus |
Dgri\GH14774-PA | 289 | GH14774-PA | 3..276 | 6..277 | 645 | 43.8 | Plus |
Dgri\GH14776-PA | 290 | GH14776-PA | 3..278 | 8..275 | 638 | 41.7 | Plus |
Dgri\GH16522-PA | 278 | GH16522-PA | 7..270 | 10..274 | 462 | 37.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG17029-PB | 284 | CG17029-PB | 1..284 | 1..284 | 1473 | 100 | Plus |
CG17029-PA | 284 | CG17029-PA | 1..284 | 1..284 | 1473 | 100 | Plus |
CG17028-PB | 284 | CG17028-PB | 1..284 | 1..284 | 1054 | 69.4 | Plus |
CG17028-PA | 284 | CG17028-PA | 1..284 | 1..284 | 1054 | 69.4 | Plus |
CG17027-PB | 288 | CG17027-PB | 2..277 | 3..277 | 713 | 46.7 | Plus |
CG17027-PA | 288 | CG17027-PA | 2..277 | 3..277 | 713 | 46.7 | Plus |
CG17026-PA | 284 | CG17026-PA | 2..277 | 4..277 | 675 | 45.3 | Plus |
CG9391-PC | 278 | CG9391-PC | 12..270 | 15..274 | 515 | 40.4 | Plus |
CG9391-PA | 278 | CG9391-PA | 12..270 | 15..274 | 515 | 40.4 | Plus |
CG9389-PA | 596 | CG9389-PA | 272..540 | 6..274 | 435 | 35.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI11877-PA | 283 | GI11877-PA | 2..283 | 3..284 | 1234 | 79.8 | Plus |
Dmoj\GI11880-PA | 284 | GI11880-PA | 1..283 | 1..283 | 914 | 58.7 | Plus |
Dmoj\GI11878-PA | 282 | GI11878-PA | 3..273 | 8..277 | 677 | 44.3 | Plus |
Dmoj\GI11876-PA | 287 | GI11876-PA | 4..277 | 6..277 | 664 | 43.8 | Plus |
Dmoj\GI12203-PA | 278 | GI12203-PA | 7..270 | 10..274 | 499 | 38.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL12744-PA | 258 | GL12744-PA | 6..258 | 5..284 | 1221 | 83.2 | Plus |
Dper\GL12745-PA | 286 | GL12745-PA | 6..286 | 5..284 | 1061 | 70.5 | Plus |
Dper\GL12746-PA | 284 | GL12746-PA | 15..271 | 20..275 | 687 | 47.1 | Plus |
Dper\GL12743-PA | 287 | GL12743-PA | 2..277 | 4..277 | 654 | 43.5 | Plus |
Dper\GL24596-PA | 278 | GL24596-PA | 7..270 | 10..274 | 494 | 37.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA14281-PA | 285 | GA14281-PA | 6..285 | 5..284 | 1390 | 91.8 | Plus |
Dpse\GA28212-PA | 286 | GA28212-PA | 6..286 | 5..284 | 1065 | 70.8 | Plus |
Dpse\GA14279-PA | 292 | GA14279-PA | 13..279 | 10..275 | 693 | 45.7 | Plus |
Dpse\GA14278-PA | 287 | GA14278-PA | 2..277 | 4..277 | 655 | 43.5 | Plus |
Dpse\GA23361-PA | 278 | GA23361-PA | 7..270 | 10..274 | 519 | 38.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM25568-PA | 284 | GM25568-PA | 1..284 | 1..284 | 1492 | 98.2 | Plus |
Dsec\GM25569-PA | 284 | GM25569-PA | 1..284 | 1..284 | 1072 | 68.3 | Plus |
Dsec\GM25570-PA | 288 | GM25570-PA | 2..277 | 3..277 | 704 | 45.7 | Plus |
Dsec\GM25567-PA | 284 | GM25567-PA | 2..277 | 4..277 | 673 | 44.9 | Plus |
Dsec\GM22155-PA | 592 | GM22155-PA | 268..527 | 6..265 | 434 | 38.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD14583-PA | 284 | GD14583-PA | 1..284 | 1..284 | 1496 | 98.6 | Plus |
Dsim\GD14584-PA | 284 | GD14584-PA | 1..284 | 1..284 | 1078 | 68.7 | Plus |
Dsim\GD14585-PA | 288 | GD14585-PA | 2..277 | 3..277 | 713 | 46 | Plus |
Dsim\GD14582-PA | 284 | GD14582-PA | 2..277 | 4..277 | 676 | 44.9 | Plus |
Dsim\GD12132-PA | 278 | GD12132-PA | 1..270 | 1..274 | 498 | 40.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ13573-PA | 285 | GJ13573-PA | 3..285 | 2..284 | 1272 | 82.3 | Plus |
Dvir\GJ13574-PA | 356 | GJ13574-PA | 3..267 | 8..271 | 657 | 44.2 | Plus |
Dvir\GJ13572-PA | 282 | GJ13572-PA | 3..272 | 10..277 | 650 | 44.1 | Plus |
Dvir\GJ11436-PA | 278 | GJ11436-PA | 7..270 | 10..274 | 472 | 38.5 | Plus |
Dvir\GJ11433-PA | 304 | GJ11433-PA | 31..285 | 19..274 | 468 | 37.1 | Plus |
Dvir\GJ13574-PA | 356 | GJ13574-PA | 268..355 | 196..283 | 281 | 58 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK24473-PA | 281 | GK24473-PA | 3..281 | 6..284 | 1329 | 87.8 | Plus |
Dwil\GK24463-PA | 284 | GK24463-PA | 3..277 | 6..277 | 670 | 44.7 | Plus |
Dwil\GK24484-PA | 290 | GK24484-PA | 4..276 | 6..277 | 655 | 45.1 | Plus |
Dwil\GK17369-PA | 279 | GK17369-PA | 4..271 | 6..274 | 511 | 38.3 | Plus |
Dwil\GK20398-PA | 704 | GK20398-PA | 330..588 | 10..268 | 481 | 39.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE22872-PA | 284 | GE22872-PA | 1..284 | 1..284 | 1488 | 98.2 | Plus |
Dyak\GE22876-PA | 284 | GE22876-PA | 1..284 | 1..284 | 1488 | 98.2 | Plus |
Dyak\GE22877-PA | 283 | GE22877-PA | 1..283 | 1..284 | 1082 | 70.4 | Plus |
Dyak\GE22873-PA | 284 | GE22873-PA | 1..284 | 1..284 | 1070 | 69.7 | Plus |
Dyak\GE22878-PA | 288 | GE22878-PA | 4..277 | 5..277 | 715 | 47.1 | Plus |